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revision 1.18 by edhill, Tue Jul 5 19:51:17 2005 UTC revision 1.39 by jmc, Mon Jul 26 15:26:08 2010 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{climd   = {Clim.~Dynamics}}  @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
10    @string{jam     = {J.~Appl.~Meteor.}}
11  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
12  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
13    @string{jcp     = {J.~Comput.~Phys.}}
14  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
15  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
16  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
# Line 30  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    
39  @Article{bis-eta:92,  @Article{bis-eta:92,
40   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 69  Line 74 
74                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
75   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
76                    }                    }
77    
78    @ARTICLE{bugi-hill:06,
79      author = {V. Bugnion and C. Hill},
80      title = {Equilibration mechanisms in an adjoint ocean general
81               circulation model},
82      journal = {Ocean Dynamics},
83      year = {2006},
84      volume = {56},
85      number = {1},
86      pages = {51-61},
87      doi   = {10.1007/s10236-005-0052-z},
88    }
89    
90  @techreport{bis-roh:97,  @techreport{bis-roh:97,
91   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 116  Line 133 
133   volume         = {120},   volume         = {120},
134   pages          = {1367--1387},   pages          = {1367--1387},
135                    }                    }
136    
137    @ARTICLE{durr:91,
138      author = {Dale R. Durran},
139      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
140               to Leapfrog Time Differencing},
141      journal = mwr,
142      year = {1991},
143      volume = {119},
144      pages  = {702-720},
145    }
146    
147    
148    @ARTICLE{dutk-etal:06,
149      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
150      title = {Controls on ocean productivity and air-sea carbon flux:
151               An adjoint model sensitivity study},
152      journal = grl,
153      year = {2006},
154      volume = {33},
155      pages  = {L02603},
156      doi    = {10.1029/2005GL024987},
157    }
158    
159  @Article{err:97,  @Article{err:97,
160   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 177  Line 216 
216   note           = {in press},   note           = {in press},
217                    }                    }
218    
219    @Article{fer-eta:05,
220     author         = {D. Ferreira and J. Marshall and P. Heimbach},
221     year           = 2005,
222     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224     journal        = jpo,
225     volume         = {35},
226     pages          = {1891--1910},
227                      }
228    
229    @Article{gas-eta:90,
230     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
231     year           = 1990,
232     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
233                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
234                       Upper Ocean Study Site},
235     journal        = jgr,
236     volume         = {95 (C9)},
237     pages          = {16,179--16,193},
238                      }
239    
240  @Article{gen-mcw:90,  @Article{gen-mcw:90,
241   author         = {P.R. Gent and J.C. McWilliams},   author         = {P.R. Gent and J.C. McWilliams},
242   year           = 1990,   year           = 1990,
# Line 326  Line 386 
386                    }                    }
387    
388  @ARTICLE{hib80,  @ARTICLE{hib80,
389    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, William D.},
390    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
391    JOURNAL     = mwr,    JOURNAL     = mwr,
392    YEAR        = 1980,    YEAR        = 1980,
# Line 356  Line 416 
416   pages          = {658-669}   pages          = {658-669}
417                    }                    }
418    
419    @Article{jam-oze:86,
420     author         = {B.M. Jamart and J. Ozer},
421     year           = {1986},
422     title          = {Numerical boundary layers and spurious residual flows},
423     journal        = jgr,
424     volume         = {91},
425     pages          = {10,621-10,631}
426                      }
427    
428  @book{kas-eta:00,  @book{kas-eta:00,
429   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
430                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 452  Line 521 
521   pages          = {38 pp.},   pages          = {38 pp.},
522   address        = {Delft (NL)},   address        = {Delft (NL)},
523                    }                    }
524    
525    @ARTICLE{losc-heim:06,
526      author = {M. Losch and P. Heimbach},
527      title = {Adjoint sensitivity of an ocean general circulation model
528               to bottom topography},
529      journal = jpo,
530      year = {2006},
531      volume = {{in press}},
532      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
533    }
534    
535    
536  @Article{maro-wun:93,  @Article{maro-wun:93,
537   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 498  Line 578 
578   pages          = {5,753--5,766},   pages          = {5,753--5,766},
579                    }                    }
580    
581  @Article{mars-sha:98,  @Article{mars-eta:98,
582   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
583   year           = 1998,   year           = 1998,
584   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 506  Line 586 
586   journal        = jms,   journal        = jms,
587   volume         = {18},   volume         = {18},
588   pages          = {115--134},   pages          = {115--134},
589     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
590     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
591                    }                    }
592    
593  @Article{mcw:96,  @Article{mol:09,
594   author         = {J. McWilliams},   author         = {Andrea Molod},
595   year           = 1996,   year           = 2009,
596   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
597   journal        = arfm,                     algorithm and tests},
598   volume         = {28},   journal        = tel,
599   pages          = {215--248},   volume         = {61A},
600     pages          = {381--393},
601                    }                    }
602    
603  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
# Line 525  Line 608 
608  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
609  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
610  %%   also available.  %%   also available.
611      
612    @incollection{naum-etal:06,
613            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
614            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
615            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
616            Pages = {~},
617            Publisher = {TU Delft},
618            Title = {Adjoint code by source transformation with OpenAD/F},
619            Year = {2006}}
620    
621    @Article{orl:76,
622     author         = {I. Orlanski},
623     year           = 1976,
624     title          = {A simple boundary condition for unbounded hyperbolic flows},
625     journal        = jcp,
626     volume         = {21},
627     pages          = {251--269},
628                    }
629    
630    @Article{pal-rom:97,
631     author         = {T. Paluszkiewicz and R.D. Romea},
632     year           = 1997,
633     title          = {A one-dimensional model for the parameterization
634                      of deep convection in the ocean},
635     journal        = dao,
636     volume         = {26},
637     pages          = {95--130},
638                      }
639    
640  @TechReport{rew:97,  @TechReport{rew:97,
641    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
# Line 572  Line 683 
683   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
684                    }                    }
685    
686    @article{utke-etal:08,
687            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
688            Date-Modified = {2007-11-19 10:15:08 -0500},
689            Journal = {{ACM} Transactions on Mathematical Software},
690            Pages = {~},
691            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
692            Volume = {34(4)},
693            Year = {2008}}
694    
695  @Article{DaSilva94,  @Article{DaSilva94,
696   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
697   year           = 1994,   year           = 1994,
# Line 581  Line 701 
701   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
702   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
703   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
704     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
705                    }                    }
706    
707  @techreport{sta-eta:97,  @techreport{stam-etal:97,
708   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
709                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
710                    C. Hill},                    C. Hill},
# Line 599  Line 720 
720   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
721                    }                    }
722    
723  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
724   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
725                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
726                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
727   year           = 2001,    year = {2002a},
728   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
729                    estimated from ocean observations and a general    pages = {3118},
730                    circulation model},    doi   = {10.1029/2001JC000888},
731   journal        = jgr,  }
732   note           = {in press},  
                   }  
733    
734  @Article{Stommel66,  @Article{Stommel66,
735   author         = {H. Stommel},   author         = {H. Stommel},
# Line 771  Line 891 
891    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
892    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
893                   modeling},                   modeling},
894    journal =      {JGR},    journal =      jgr,
895    year =         1997,    year =         1997,
896    volume =       102,    volume =       102,
897    number =       {C3},    number =       {C3},
898    pages =        {5733-5752}    pages =        {5733-5752},
899      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
900  }  }
901    
902  @Article{marshall:97b,  @Article{marshall:97b,
903    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
904    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
905                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
906    journal =      {JGR},    journal =      jgr,
907    year =         1997,    year =         1997,
908    volume =       102,    volume =       102,
909    number =       {C3},    number =       {C3},
910    pages =        {5753-5766}    pages =        {5753-5766},
911      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
912  }  }
913    
914  @Article{adcroft:97,  @Article{adcroft:97,
915    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
916    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
917                    coordinate ocean model},                    coordinate ocean model},
918    journal =      {MWR},    journal =      mwr,
919    year =         1997,    year =         1997,
920    volume =       125,    volume =       125,
921    pages =        {2293-2315}    pages =        {2293-2315},
922      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
923      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
924  }  }
925    
926  @Article{adcroft:04,  @Article{adcroft:04a,
927    author =       {Adcroft, A.J. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
928    title =        {Re-scaled height coordinates for accurate representation    title =        {Re-scaled height coordinates for accurate representation
929                    of free-surface flows in ocean circulation models},                    of free-surface flows in ocean circulation models},
930    journal =      om,    journal =      om,
931    year =         2004,    year =         2004,
932    note =         {in press}    volume =       7,
933      pages =        {269-284},
934      doi   =        {10.1016/j.ocemod.2003.09.003},
935    }
936    
937    @Article{adcroft:04b,
938      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
939      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
940                      on the Expanded Spherical Cube},
941      journal =      mwr,
942      year =         2004,
943      volume =       132,
944      pages =        {2845-2863},
945      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
946      doi     =      {10.1175/MWR2823.1},
947    }
948    
949    @inproceedings{adcroft:04c,
950      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
951                      and P. Heimbach},
952      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
953      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
954                     Recent developments in numerical methods for atmosphere and
955                     ocean modelling},
956      year =         2004,
957      pages =        {139-149},
958      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
959     publisher =     ecmwf
960    }
961    
962    @Article{marshall:04,
963      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
964      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
965      journal =      mwr,
966      year =         2004,
967      volume =       132,
968      pages =        {2882-2894},
969      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
970      doi    =       {10.1175/MWR2835.1},
971  }  }
972    
973  @Article{visbeck:97,  @Article{visbeck:97,
974    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
975    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
976                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
977    journal =      {JPO},    journal =      jpo,
978    year =         1997,    year =         1997,
979    volume =       27,    volume =       27,
980    number =       3,    number =       3,
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994    pages =        {1-51}    pages =        {1-51}
995  }  }
996    
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   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
997  @Article{mjn:99,  @Article{mjn:99,
998    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
999    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 865  Line 1018 
1018    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
1019    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
1020                    at both high and low resolutions},                    at both high and low resolutions},
1021    journal =      {MWR},    journal =      mwr,
1022    year =         1999,    year =         1999,
1023    volume =       127,    volume =       127,
1024    pages =        {1928-1936}    pages =        {1928-1936},
1025      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1026      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1027  }  }
1028    
1029  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 883  Line 1038 
1038  @Article{wardle:00,  @Article{wardle:00,
1039    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
1040    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
1041    journal =      {JPO},    journal =      jpo,
1042    year =         2000,    year =         2000,
1043    volume =       30,    volume =       30,
1044    number =       10,    number =       10,
# Line 900  Line 1055 
1055  }  }
1056    
1057  @Article{adcroft:02,  @Article{adcroft:02,
1058    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
1059    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
1060    journal =      om,    journal =      om,
1061    year =         2002,    year =         2002,
# Line 918  Line 1073 
1073    volume =       17    volume =       17
1074  }  }
1075    
1076    @Article{miller_white:84,
1077      author =       {Miller, M. J. and White, A. A.},
1078      title =        {On the non-hydrostatic equations in pressure
1079                      and sigma coordiantes},
1080      journal =      qjrms,
1081      year =         1984,
1082      volume =       110,
1083      pages =        {515-533}
1084    }
1085    
1086    @Article{white:89,
1087      author =       {White, A. A.},
1088      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1089      journal =      qjrms,
1090      year =         1989,
1091      volume =       115,
1092      pages =        {1243-1251}
1093    }
1094    
1095  @Article{adcroft:98,  @Article{adcroft:98,
1096    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1097    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 941  Line 1115 
1115    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1116    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1117                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1118    journal =      {MWR},    journal =      mwr,
1119    year =         2000,    year =         2000,
1120    volume =       128,    volume =       128,
1121    number =       8,    number =       8,
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1126    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1127    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1128                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1129    journal =      {JCP},    journal =      jcp,
1130    year =         1993,    year =         1993,
1131    volume =       105,    volume =       105,
1132    number =       2,    number =       2,
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1145  @Article{dm:95,  @Article{dm:95,
1146    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1147    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1148    journal =      {JC},    journal =      jclim,
1149    year =         1995,    year =         1995,
1150    volume =       8,    volume =       8,
1151    number =       12,    number =       12,
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1155  @Article{ldd:97,  @Article{ldd:97,
1156    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1157    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1158    journal =      {JPO},    journal =      jpo,
1159    year =         1997,    year =         1997,
1160    volume =       27,    volume =       27,
1161    number =       11,    number =       11,
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1166    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1167    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1168                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1169    journal =      {JPO},    journal =      jpo,
1170    year =         1999,    year =         1999,
1171    volume =       29,    volume =       29,
1172    number =       8,    number =       8,
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1197  }  }
1198    
1199  @Article{molteni:03,  @Article{molteni:03,
1200    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1201    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1202                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1203                    multidecadal experiments},                    multidecadal experiments},
1204    journal =      climd,    journal =      climd,
1205    year =         2003,    year =         2003,
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1208  }  }
1209    
1210  @Article{jiang99,  @Article{jiang99,
1211    author =       {Shi Jiang and Peter H. Stone and Paola    author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
                   Malanotte-Rizzoli},  
1212    title =        {An Assessment of the {G}eophysical {F}luid    title =        {An Assessment of the {G}eophysical {F}luid
1213                    {D}ynamics {L}aboratory Ocean Model with Coarse                    {D}ynamics {L}aboratory Ocean Model with Coarse
1214                    Resolution: Annual-Mean Climatology},                    Resolution: Annual-Mean Climatology},
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1269  }  }
1270    
1271  @ARTICLE{zha98a,  @ARTICLE{zha98a,
1272    AUTHOR      = "J. Zhang and W. D. {Hibler, III} and M. Steele    AUTHOR      = "J. Zhang and Hibler, III, W. D. and M. Steele
1273                   and D. A. Rothrock",                   and D. A. Rothrock",
1274    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1275    JOURNAL     = jpo,    JOURNAL     = jpo,
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1298  }  }
1299    
1300  @ARTICLE{hib79,  @ARTICLE{hib79,
1301    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, W. D.},
1302    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1303    JOURNAL     = jpo,    JOURNAL     = jpo,
1304    YEAR        = 1979,    YEAR        = 1979,
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1307  }  }
1308    
1309  @ARTICLE{fla92,  @ARTICLE{fla92,
1310    AUTHOR      = "G. M. Flato and W. D. {Hibler, III}",    AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1311    TITLE       = "Modeling pack ice as a cavitating fluid",    TITLE       = "Modeling pack ice as a cavitating fluid",
1312    JOURNAL     = jpo,    JOURNAL     = jpo,
1313    YEAR        = 1992,    YEAR        = 1992,
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1343    pages =        {359--387},    pages =        {359--387},
1344  }  }
1345    
1346    @TechReport{Dutkiewicz_etal_05,
1347      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1348      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1349                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1350                      in Climate Change Studies, Report 122},
1351      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1352      year =         {2005},
1353      OPTnumber =    {122},
1354      address =      {Cambridge, MA},
1355      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1356    }
1357    
1358    @Article{Follows_etal_05,
1359      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1360      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1361                      Biogeochemistry Models},
1362      journal =      {Ocean Modeling},
1363      year =         {{in press}},
1364      OPTkey =       {},
1365      OPTvolume =    {},
1366      OPTnumber =    {},
1367      OPTpages =     {},
1368    }
1369    
1370    @Article{McKinley_etal_04,
1371      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1372      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1373                      Equatorial Pacific and the North Atlantic},
1374      journal =      {Global Biogeochemical Cycles},
1375      year =         {2004},
1376      OPTkey =       {},
1377      volume =       {18},
1378      number =       {doi:10.1029/2003GB002179},
1379      OPTpages =     {},
1380    }
1381    
1382    @TechReport{Trenberth_etal_89,
1383      author =       {K. Trenberth and J. Olson and W. Large},
1384      title =        {A global wind stress climatology based on ECMWF analyses},
1385      institution =  {NCAR},
1386      year =         {1989},
1387      OPTkey =       {},
1388      OPTtype =      {},
1389      number =       {NCAR/TN-338+STR},
1390      address =      {Boulder, CO},
1391      OPTmonth =     {},
1392    }
1393    
1394    @Article{Wanninkhof_92,
1395      author =       {R. Wanninkhof},
1396      title =        {Relationship between wind speed and gas exchange over the ocean},
1397      journal =      jgr,
1398      year =         {1992},
1399      OPTkey =       {},
1400      volume =       {97},
1401      OPTnumber =    {},
1402      pages =        {7373--7382},
1403      OPTmonth =     {},
1404    }
1405    
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1407     author       = {A. K. Blackadar},
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1409     title        = {High Resolution Models of the Planetary Boundary Layer.},
1410     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1411     editor       = {Pfafflin and Zeigler},
1412     publisher    = {Gordon and Breach, Scientific Publishers}
1413    }
1414    
1415    @Article{chou:92,
1416     author       = {M-D. Chou},
1417     year         = {1992},
1418     title        = {A solar radiation model for use in climate studies.},
1419     journal      = jas,
1420     volume       = {49},
1421     pages        = {762-772}
1422    }
1423    
1424    @Article{chou:90,
1425     author       = {M-D. Chou},
1426     year         = {1990},
1427     title        = {Parameterizations for the absorption of solar radiation
1428                       by O$_2$ and CO$_2$ with applications to climate studies.},
1429     journal      = jclim,
1430     volume       = {3},
1431     pages        = {209-217}
1432    }
1433    
1434    @techreport{chsz:94,
1435     author       = {M.-D. Chou and M.J.Suarez},
1436     year         = {1994},
1437     title        = {An efficient thermal infrared radiation parameterization
1438    for use in general circulation models},
1439     institution  = {National Aeronautics and Space Administration},
1440     type         = {NASA Technical Memorandum},
1441     number       = {104606-Vol 3},
1442     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1443     note         = {http://www.gmao.nasa.gov/}
1444    }
1445    
1446    @Article{clarke:70,
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1448     year         = {1970},
1449     title        = {Observational studies in the atmospheric boundary layer.},
1450     journal      = qjrms,
1451     volume       = {96},
1452     pages        = {91-114}
1453    }
1454    
1455    @Article{deftow:94,
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1462    }
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1466     year         = {1989},
1467     title        = {A global climatology of albedo, roughness length and stomatal
1468    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1469     journal      = jam,
1470     volume       = {28},
1471     pages        = {833-855}
1472    }
1473    
1474    @Article{helflab:88,
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1476     year         = {1988},
1477     title        = { Design of a non-singular level 2.5 second-order closure
1478    model for the prediction of atmospheric turbulence. },
1479     journal      = jas,
1480     volume       = {45},
1481     pages        = {113-132}
1482    }
1483    
1484    @inproceedings{helfetal:91,
1485     author       = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1486     year         = {1991},
1487     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1488     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1489     year         = 1991,
1490     pages        = {406-425},
1491     publisher    = {American Meteorological Society}
1492    }
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1494    @Article{helfschu:95,
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1496     year         = {1995},
1497     title        = { Climatology of the
1498    Simulated Great Plains Low-Level Jet and Its contribution to the
1499    Continental Moisture Budget of the United States. },
1500     journal      = jclim,
1501     volume       = {8},
1502     pages        = {784-806}
1503    }
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1507     year         = {1975},
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1512    }
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1516     year         = {1991},
1517     title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1518     institution  = {National Aeronautics and Space Administration},
1519     type         = {NASA Technical Memorandum},
1520     number       = {104538},
1521     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1522     note         = {http://www.gmao.nasa.gov/},
1523    }
1524    
1525    @Article{ks:92,
1526     author       = { Randal D. Koster and Max J. Suarez},
1527     year         = {1992},
1528     title        = { Modeling the Land Surface Boundary
1529    in Climate Models as a Composite of Independent Vegetation Stands.},
1530     journal      = jgr,
1531     volume       = {97},
1532     pages        = {2697-2715}
1533    }
1534    
1535    @Article{lhans:74,
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1537     year         = {1974},
1538     title        = { A parameterization for the absorption of solar radiation
1539    in the Earth's atmosphere.  },
1540     journal      = jas,
1541     volume       = {31},
1542     pages        = {118-133}
1543    }
1544    
1545    @Article{larpond:81,
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1547     year         = {1981},
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1549     journal      = jpo,
1550     volume       = {11},
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1552    }
1553    
1554    @Article{moorsz:92,
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1558    convection for general circulation models.},
1559     journal      = mwr,
1560     volume       = {120},
1561     pages        = {978-1002}
1562    }
1563    
1564    @incollection{pano:73,
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1567     title        = {Tower Micrometeorology. },
1568     booktitle    = {Workshop on Micrometeorology},
1569     editor       = {D. A. Haugen},
1570     publisher    = {American Meteorological Society}
1571    }
1572    
1573    @Article{reynetal:94,
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1575     year         = {1994},
1576     title        = {Improved global sea surface temperature analyses using optimum interpolation.},
1577     journal      = jclim,
1578     volume       = {7},
1579     pages        = {929-948}
1580    }
1581    
1582    @Article{rosen:87,
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1584     year         = {1987},
1585     title        = {  A computation of the stratospheric
1586    diabatic circulation using an accurate radiative transfer model},
1587     journal      = jas,
1588     volume       = {44},
1589     pages        = {859-876}
1590    }
1591    
1592    @Article{sudm:88,
1593     author       = {Y. C. Sud and A. Molod},
1594     year         = {1988},
1595     title        = {  The roles of dry convection, cloud-radiation feedback processes
1596    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1597     journal      = mwr,
1598     volume       = {116},
1599     pages        = {2366-2387}
1600    }
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1604     year         = {1996},
1605     title        = {  Dynamical aspects of climate simulations Using the GEOS
1606    General Circulation Model},
1607     institution  = {National Aeronautics and Space Administration},
1608     type         = {NASA Technical Memorandum},
1609     number       = {104606 Volume 10},
1610     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1611     note         = {http://www.gmao.nasa.gov/},
1612    }
1613    
1614    @Article{yagkad:74,
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1616     year         = {1974},
1617     title        = {Heat and mass transfer between a rough wall and
1618    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1619     journal      = jfm,
1620     volume       = {62},
1621     pages        = {601-623}
1622    }
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1624    @Article{yam:77,
1625     author       = {T. Yamada},
1626     year         = {1977},
1627     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1628    atmospheric boundary layer.},
1629     journal      = {Atmos. Environ.},
1630     volume       = {11},
1631     pages        = {1015-1024}
1632    }
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1634    @Article{zhouetal:95,
1635     author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1636     year         = {1995},
1637     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1638     journal      = qjrms,
1639     volume       = {122},
1640     pages        = {903-927}
1641    }
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1645                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1646                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1647                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1648     year           = 1999,
1649     title          = {An intercomparison of radiatively driven entrainment and turbulence
1650                      in a smoke cloud, as simulated by different numerical models.},
1651     journal        = qjrms,
1652     volume         = {125},
1653     pages          = {391-423}
1654                      }
1655    
1656    @Article{bm:99,
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1660     journal        = {Climate Dyn.},
1661     volume         = {15},
1662     pages          = {293-318}
1663                      }
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1665    @Article{Inn:01,
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1668     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1669                      Implications for the Simulation of the Madden-Julian Oscillation.},
1670     journal        = {Climate Dyn.},
1671     volume         = {17},
1672     pages          = {777-794}
1673                      }
1674    
1675    @Article{kal:89,
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1677                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
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1679     title          = {Rules for Interchange of Physical Parameterizations.},
1680     journal        = bams,
1681     volume         = {70},
1682     pages          = {620-622}
1683                      }
1684    
1685    @Article{wo:98,
1686     author         = {D. Williamson and J.G. Olsen},
1687     year           = 1998,
1688     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1689     journal        = mwr,
1690     volume         = {126},
1691     pages          = {991-1000}
1692                      }
1693    @TechReport{MPI-std-20,
1694      author =       {{Message Passing Interface Forum}}},
1695      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1696      institution =  {mpi-forum.org},
1697      year =         {1998},
1698    }
1699    
1700    @Article{cam08,
1701      author =       {Jean-Michel Campin and John Marshall and David
1702                      Ferreira},
1703      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1704                      Coordinate z$^\ast$},
1705      journal =      om,
1706      volume =       24,
1707      number =       {1--2},
1708      pages =        {1--14},
1709      doi =          {10.1016/j.ocemod.2008.05.005},
1710      year =         2008
1711    }
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1716      title =        {Large-Scale Sea Ice Drift and Deformation:
1717                      {C}omparison between Models and Observations in the
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1724    }
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1728      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1729                      increases},
1730      booktitle =    {Climate processes and climate sensitivity},
1731      pages =        {238--253},
1732      publisher =    {AGU},
1733      year =         1984,
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1735      volume =       29,
1736      series =       {Geophysical Monograph},
1737      address =      {Washington, D.C.}
1738    }
1739    
1740    @Article{hibler87,
1741      author =       {Hibler, III, William D. and Kirk Bryan},
1742      title =        {A Diagnostic Ice-Ocean Model},
1743      journal =      jpo,
1744      year =         1987,
1745      volume =       17,
1746      number =       7,
1747      pages =        {987--1015}
1748    }
1749    
1750    @InCollection{hibler95,
1751      author =       {Hibler, III, William D. and Chi F. Ip},
1752      title =        {The effect of sea ice rheology on {A}rcitc buoy
1753                      drift},
1754      booktitle =    {Ice Mechanics},
1755      pages =        {255--264},
1756      publisher =    {Am. Soc. of Mech. Eng.},
1757      year =         1995,
1758      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1759      volume =       204,
1760      series =       {AMD},
1761      address =      {New York}
1762    }
1763    
1764    @Article{hibler97,
1765      author =       {Hibler, III, William D. and Erland M. Schulson},
1766      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1767                      Investigations of Climate},
1768      journal =      angl,
1769      year =         1997,
1770      volume =       25,
1771      pages =        {26--32}
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1775      author =       {Willem Hundsdorfer and R. A. Trompert},
1776      title =        {Method of Lines and Direct Discretization: a
1777                      Comparison for Linear Advection},
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1780      volume =       13,
1781      number =       6,
1782      pages =        {469--490},
1783      doi =          {10.1016/0168-9274(94)90009-4}
1784    }
1785    
1786    @Article{leppaeranta83,
1787      author =       {Matti Lepp{\"a}ranta},
1788      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1789                      Thickness in Subarctic Basins},
1790      journal =      {Nordic Hydrology},
1791      year =         1983,
1792      volume =       14,
1793      pages =        {59--70}
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1796    @Article{manabe79,
1797      author =       {S. Manabe and Kirk Bryan and M. J. Spelman},
1798      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1799                      Variation for Future Studies of Climate Sensitivity},
1800      journal =      dao,
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1807      author =       {D. Menemenlis and C. Hill and A. Adcroft and
1808                      J.-M. Campin and B. Cheng and B. Ciotti and
1809                      I. Fukumori and A. Koehl and P. Heimbach and
1810                      C. Henze and T. Lee and D. Stammer and J. Taft and
1811                      J. Zhang},
1812      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1813                      Climate Research},
1814      journal =      eos,
1815      year =         2005,
1816      volume =       86,
1817      number =       9,
1818      pages =        {89, 95--96}
1819    }
1820    
1821    @Article{parkinson79,
1822      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1823      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1824      journal =      jgr,
1825      year =         1979,
1826      month =        jan,
1827      volume =       84,
1828      number =       {C1},
1829      pages =        {311--337},
1830      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1831      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1832                      System}
1833    }
1834    
1835    @Article{semtner84,
1836      author =       {Semtner, Jr., Albert J.},
1837      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1838                      Ice in Studies of Climatic Change},
1839      journal =      cch,
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1841      volume =       6,
1842      number =       1,
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1844    }
1845    
1846    @Article{zhang97,
1847      author =       {Jinlun Zhang and Hibler, III, William D.},
1848      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
1849      journal =      jgr,
1850      year =         1997,
1851      volume =       102,
1852      number =       {C4},
1853      pages =        {8691--8702}
1854    }
1855    
1856    @Article{zhang03,
1857      author =       {Jinlun Zhang and Drew A. Rothrock},
1858      title =        {Modeling Global Sea Ice with a Thickness and
1859                      Enthalpy Distribution Model in Generalized
1860                      Curvilinear Coordinates},
1861      journal =      mwr,
1862      year =         2003,
1863      volume =       131,
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1865      pages =        {845--861}
1866    }
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1868    @Article{beckmann99,
1869      author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
1870                      Timmermann},
1871      title =        {A Numerical Model of the {W}eddell {S}ea:
1872                      Large-Scale Circulation and Water Mass Distribution},
1873      journal =      jgr,
1874      year =         1999,
1875      volume =       104,
1876      number =       {C10},
1877      pages =        {23,375--23,392}
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1880    @Article{grosfeld97,
1881      author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1882                      Determann},
1883      title =        {Thermohaline Circulation and Interaction between Ice
1884                      Shelf Cavities and the Adjacent Open Water},
1885      journal =      jgr,
1886      year =         1997,
1887      volume =       102,
1888      number =       {C7},
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1892    @Article{hellmer89,
1893      author =       {Hartmut H. Hellmer and Dirk J. Olbers},
1894      title =        {A Two-Dimensional Model of the Thermohaline
1895                      Circulation Under an Ice Shelf},
1896      journal =      {Antarct. Sci.},
1897      year =         1989,
1898      volume =       1,
1899      pages =        {325--336}
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1902    @Article{holland99,
1903      author =       {David M. Holland and Adrian Jenkins},
1904      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
1905                      Base of an Ice Shelf},
1906      journal =      jpo,
1907      year =         1999,
1908      volume =       29,
1909      number =       8,
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1913    @Article{jenkins01,
1914      author =       {Adrian Jenkins and Hartmut H. Hellmer and David
1915                      M. Holland},
1916      title =        {The Role of Meltwater Advection in the Formulation
1917                      of Conservative Boundary Conditions at an Ice-Ocean
1918                      Interface},
1919      journal =      jpo,
1920      year =         2001,
1921      volume =       31,
1922      pages =        {285--296}}
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1924    @Article{losch08,
1925      author =       {Martin Losch},
1926      title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
1927                      General Circulation Model},
1928      journal =      jgr,
1929      year =         2008,
1930      volume =       113,
1931      number =       {C08043},
1932      doi =          {10.1029/2007JC004368}
1933    }
1934    
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