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revision 1.37 by mlosch, Thu May 14 10:18:12 2009 UTC revision 1.44 by dfer, Mon Jun 27 02:09:19 2011 UTC
# Line 226  Line 226 
226   pages          = {1891--1910},   pages          = {1891--1910},
227                    }                    }
228    
229    @Article{gas-eta:90,
230     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
231     year           = 1990,
232     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
233                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
234                       Upper Ocean Study Site},
235     journal        = jgr,
236     volume         = {95 (C9)},
237     pages          = {16,179--16,193},
238                      }
239    
240  @Article{gen-mcw:90,  @Article{gen-mcw:90,
241   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
242   year           = 1990,   year           = 1990,
243   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
244   journal        = jpo,   journal        = jpo,
# Line 236  Line 247 
247                    }                    }
248    
249  @Article{gen-eta:95,  @Article{gen-eta:95,
250   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
251   year           = 1995,   year           = 1995,
252   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
253   journal        = jpo,   journal        = jpo,
254   volume         = {25},   volume         = {25},
255   pages          = {463--474},   pages          = {463--474},
# Line 429  Line 438 
438  @Article{lar-eta:94,  @Article{lar-eta:94,
439   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
440   year           = 1994,   year           = 1994,
441   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
442   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
443   volume         = {32},   volume         = {32},
444   pages          = {363--403},   pages          = {363--403},
# Line 512  Line 520 
520                    }                    }
521    
522  @ARTICLE{losc-heim:06,  @ARTICLE{losc-heim:06,
523    author = {M. Losch and P. Heimbach},    author =       {Martin Losch and Patrick Heimbach},
524    title = {Adjoint sensitivity of an ocean general circulation model    title =        {Adjoint Sensitivity of an Ocean General Circulation
525             to bottom topography},                    Model to Bottom Topography},
526    journal = jpo,    journal =      jpo,
527    year = {2006},    year =         2007,
528    volume = {{in press}},    volume =       37,
529      doi =          {10.1175/JPO3017.1},
530      number =       2,
531      pages =        {377--393},
532    url    = {http://mitgcm.org/pdfs/Los2006a.pdf},    url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
533  }  }
534    
# Line 579  Line 590 
590   doi            = {10.1016/S0924-7963\%2898\%2900008-6},   doi            = {10.1016/S0924-7963\%2898\%2900008-6},
591                    }                    }
592    
593  @Article{mcw:96,  @Article{mol:09,
594   author         = {J. McWilliams},   author         = {Andrea Molod},
595   year           = 1996,   year           = 2009,
596   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
597   journal        = arfm,                     algorithm and tests},
598   volume         = {28},   journal        = tel,
599   pages          = {215--248},   volume         = {61A},
600     pages          = {381--393},
601                    }                    }
602    
603  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
# Line 596  Line 608 
608  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
609  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
610  %%   also available.  %%   also available.
611      
612  @incollection{naum-etal:06,  @incollection{naum-etal:06,
613          Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},          Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
614          Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},          Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
# Line 606  Line 618 
618          Title = {Adjoint code by source transformation with OpenAD/F},          Title = {Adjoint code by source transformation with OpenAD/F},
619          Year = {2006}}          Year = {2006}}
620    
621    @Article{orl:76,
622     author         = {I. Orlanski},
623     year           = 1976,
624     title          = {A simple boundary condition for unbounded hyperbolic flows},
625     journal        = jcp,
626     volume         = {21},
627     pages          = {251--269},
628                    }
629    
630    @Article{pal-rom:97,
631     author         = {T. Paluszkiewicz and R.D. Romea},
632     year           = 1997,
633     title          = {A one-dimensional model for the parameterization
634                      of deep convection in the ocean},
635     journal        = dao,
636     volume         = {26},
637     pages          = {95--130},
638                      }
639    
640  @TechReport{rew:97,  @TechReport{rew:97,
641    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
642    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
# Line 940  Line 971 
971  }  }
972    
973  @Article{visbeck:97,  @Article{visbeck:97,
974    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
975    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
                   coarse-resolution ocean circulation models},  
976    journal =      jpo,    journal =      jpo,
977    year =         1997,    year =         1997,
978    volume =       27,    volume =       27,
# Line 1082  Line 1112 
1112    
1113  @Article{griffies:00,  @Article{griffies:00,
1114    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1115    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1116                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1117    journal =      mwr,    journal =      mwr,
1118    year =         2000,    year =         2000,
# Line 1111  Line 1141 
1141    pages =        {221-244}    pages =        {221-244}
1142  }  }
1143    
1144    @Article{Cox87,
1145      author =       {M. D. Cox},
1146      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1147      journal =      {Ocean modelling},
1148      year =         1987,
1149      volume =       74,
1150      pages =        {1-5 (Unpublished manuscript)}
1151    }
1152    
1153    @Article{gretal:98,
1154      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1155      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1156      journal =      jpo,
1157      year =         1998,
1158      volume =       28,
1159      pages =        {805-830}
1160    }
1161    
1162    @ARTICLE{gr:98,
1163      author =       {S. M. Griffies},
1164      title =        {The {Gent-McWilliams} Skew Flux},
1165      journal =      jpo,
1166      year =         1998,
1167      volume =       28,
1168      pages =        {831-841}
1169    }
1170    
1171    
1172    @Article{gkw:91,
1173      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1174      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1175      journal =      climd,
1176      year =         1991,
1177      volume =       5,
1178      number =       4,
1179      pages =        {211-226},
1180      doi   =        {10.1007/BF00210006}
1181    }
1182    
1183  @Article{dm:95,  @Article{dm:95,
1184    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {G. Danabasoglu and J. C. McWilliams},
1185    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1186    journal =      jclim,    journal =      jclim,
1187    year =         1995,    year =         1995,
# Line 1122  Line 1191 
1191  }  }
1192    
1193  @Article{ldd:97,  @Article{ldd:97,
1194    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {W. G. Large and G. Danabasoglu and S. D. Doney and J. C. McWilliams},
1195    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1196    journal =      jpo,    journal =      jpo,
1197    year =         1997,    year =         1997,
# Line 1132  Line 1201 
1201  }  }
1202    
1203  @Article{gkw:99,  @Article{gkw:99,
1204    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1205    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
                   coarse-resolution numerical models},  
1206    journal =      jpo,    journal =      jpo,
1207    year =         1999,    year =         1999,
1208    volume =       29,    volume =       29,
# Line 1290  Line 1358 
1358    JOURNAL     = jpo,    JOURNAL     = jpo,
1359    YEAR        = 1997,    YEAR        = 1997,
1360    VOLUME      = 27,    VOLUME      = 27,
1361    PAGES       = "1849-1867"    PAGES       = "1849--1867"
1362    }
1363    
1364    @Article{hun01,
1365      author =       {Elizabeth C. Hunke},
1366      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1367                      Model: Linearization Issues},
1368      journal =      jcp,
1369      year =         2001,
1370      volume =       170,
1371      pages =        {18--38},
1372      doi =          {10.1006/jcph.2001.6710}
1373  }  }
1374    
1375  @ARTICLE{zha00,  @ARTICLE{zha00,
# Line 1299  Line 1378 
1378    JOURNAL     = jgr,    JOURNAL     = jgr,
1379    YEAR        = 2000,    YEAR        = 2000,
1380    VOLUME      = 105,    VOLUME      = 105,
1381    PAGES       = "3325-3338"    PAGES       = "3325--3338"
1382  }  }
1383    
1384  @Article{Shapiro_70,  @Article{Shapiro_70,
# Line 1659  atmospheric boundary layer.}, Line 1738  atmospheric boundary layer.},
1738   volume         = {126},   volume         = {126},
1739   pages          = {991-1000}   pages          = {991-1000}
1740                    }                    }
1741    
1742  @TechReport{MPI-std-20,  @TechReport{MPI-std-20,
1743    author =       {{Message Passing Interface Forum}}},    author =       {{Message Passing Interface Forum}},
1744    title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},    title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1745    institution =  {mpi-forum.org},    institution =  {mpi-forum.org},
1746    year =         {1998},    year =         {1998},
# Line 1901  atmospheric boundary layer.}, Line 1981  atmospheric boundary layer.},
1981    doi =          {10.1029/2007JC004368}    doi =          {10.1029/2007JC004368}
1982  }  }
1983    
1984    @Article{Dutay02,
1985     author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
1986        and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
1987        and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
1988        and G. Madec and E. Maier-Reimer and J.C. Marshall and R.J. Matear and P. Monfray
1989        and A. Mouchet and G.-K. Plattner and J. sarmiento and R. Schlitzer and R. Slater
1990        and I.J. Totterdell and M.-F. Weirig and Y. Yammanaka and A. Yool},
1991     year           = 2002,
1992     title          = {Evaluation of ocean model ventilation with CFC-11:
1993                       comparison of 13 global ocean models},
1994     journal        = om,
1995     volume         = {4},          number= {},             month   = {},
1996     pages          = {89-120}
1997                    }
1998    
1999    @Article{marsh06,
2000     author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
2001     year           = 2006,
2002     title          = {Estimates and Implications of Surface Eddy Diffusivity
2003                       in the Southern Ocean Derived from Tracer Transport},
2004     journal        = jpo,
2005     volume         = {36},          number= {},             month   = {},
2006     pages          = {1806-1821}
2007                    }
2008    
2009    @InProceedings{hoe-hill:99,
2010      author =       {Hoe, James C. and Chris Hill and Alistair Adcroft},
2011      title =        {A Personal Supercomputer for Climate Research},
2012      booktitle =    {In Proceedings of the ACM/IEEE Super-Computing Confrence},
2013      year =         1999,
2014      pages = {10.1109/SC.1999},
2015      publisher =    {IEEE},
2016    }
2017    
2018    @Article{stevens:90,
2019      author =       {Stevens, D. P.},
2020      title =        {On Open Boundary Conditions for Three Dimensional
2021                      Primitive Equation Ocean Circulation Models},
2022      journal =      {Geophys. Astrophys. Fl. Dyn.},
2023      year =         1990,
2024      volume =       51,
2025      pages =        {103--133}}
2026    
2027    @Article{kalnay96,
2028      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
2029                      W. Collins and D. Deaven and L. Gandin and
2030                      M. Iredell and S. Saha and G. White and J. Woollen
2031                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
2032                      W. Higgins and J. Janowiak and K. C. Mo and
2033                      C. Ropelewski and J. Wang and A. Leetmaa and
2034                      R. Reynolds and R. Jenne and D. Joseph},
2035      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
2036      journal =      bams,
2037      year =         1996,
2038      volume =       77,
2039      pages =        {437--471}
2040    }
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