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revision 1.25 by jmc, Fri Sep 23 01:03:47 2005 UTC revision 1.35 by jmc, Sat Apr 25 13:16:04 2009 UTC
# Line 71  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 118  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{durr:91,
135      author = {Dale R. Durran},
136      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
137               to Leapfrog Time Differencing},
138      journal = mwr,
139      year = {1991},
140      volume = {119},
141      pages  = {702-720},
142    }
143    
144    
145    @ARTICLE{dutk-etal:06,
146      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
147      title = {Controls on ocean productivity and air-sea carbon flux:
148               An adjoint model sensitivity study},
149      journal = grl,
150      year = {2006},
151      volume = {33},
152      pages  = {L02603},
153      doi    = {10.1029/2005GL024987},
154    }
155    
156  @Article{err:97,  @Article{err:97,
157   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 179  Line 213 
213   note           = {in press},   note           = {in press},
214                    }                    }
215    
216    @Article{fer-eta:05,
217     author         = {D. Ferreira and J. Marshall and P. Heimbach},
218     year           = 2005,
219     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
220                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
221     journal        = jpo,
222     volume         = {35},
223     pages          = {1891--1910},
224                      }
225    
226  @Article{gen-mcw:90,  @Article{gen-mcw:90,
227   author         = {P.R. Gent and J.C. McWilliams},   author         = {P.R. Gent and J.C. McWilliams},
228   year           = 1990,   year           = 1990,
# Line 358  Line 402 
402   pages          = {658-669}   pages          = {658-669}
403                    }                    }
404    
405    @Article{jam-oze:86,
406     author         = {B.M. Jamart and J. Ozer},
407     year           = {1986},
408     title          = {Numerical boundary layers and spurious residual flows},
409     journal        = jgr,
410     volume         = {91},
411     pages          = {10,621-10,631}
412                      }
413    
414  @book{kas-eta:00,  @book{kas-eta:00,
415   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
416                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 454  Line 507 
507   pages          = {38 pp.},   pages          = {38 pp.},
508   address        = {Delft (NL)},   address        = {Delft (NL)},
509                    }                    }
510    
511    @ARTICLE{losc-heim:06,
512      author = {M. Losch and P. Heimbach},
513      title = {Adjoint sensitivity of an ocean general circulation model
514               to bottom topography},
515      journal = jpo,
516      year = {2006},
517      volume = {{in press}},
518      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
519    }
520    
521    
522  @Article{maro-wun:93,  @Article{maro-wun:93,
523   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 500  Line 564 
564   pages          = {5,753--5,766},   pages          = {5,753--5,766},
565                    }                    }
566    
567  @Article{mars-sha:98,  @Article{mars-eta:98,
568   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
569   year           = 1998,   year           = 1998,
570   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 508  Line 572 
572   journal        = jms,   journal        = jms,
573   volume         = {18},   volume         = {18},
574   pages          = {115--134},   pages          = {115--134},
575     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
576     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
577                    }                    }
578    
579  @Article{mcw:96,  @Article{mcw:96,
# Line 528  Line 594 
594  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
595  %%   also available.  %%   also available.
596    
597    @incollection{naum-etal:06,
598            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
599            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
600            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
601            Pages = {~},
602            Publisher = {TU Delft},
603            Title = {Adjoint code by source transformation with OpenAD/F},
604            Year = {2006}}
605    
606  @TechReport{rew:97,  @TechReport{rew:97,
607    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
608    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
# Line 574  Line 649 
649   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
650                    }                    }
651    
652    @article{utke-etal:08,
653            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
654            Date-Modified = {2007-11-19 10:15:08 -0500},
655            Journal = {{ACM} Transactions on Mathematical Software},
656            Pages = {~},
657            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
658            Volume = {34(4)},
659            Year = {2008}}
660    
661  @Article{DaSilva94,  @Article{DaSilva94,
662   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
663   year           = 1994,   year           = 1994,
# Line 583  Line 667 
667   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
668   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
669   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
670     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
671                    }                    }
672    
673  @techreport{sta-eta:97,  @techreport{stam-etal:97,
674   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
675                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
676                    C. Hill},                    C. Hill},
# Line 601  Line 686 
686   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
687                    }                    }
688    
689  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
690   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
691                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
692                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
693   year           = 2001,    year = {2002a},
694   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
695                    estimated from ocean observations and a general    pages = {3118},
696                    circulation model},    doi   = {10.1029/2001JC000888},
697   journal        = jgr,  }
698   note           = {in press},  
                   }  
699    
700  @Article{Stommel66,  @Article{Stommel66,
701   author         = {H. Stommel},   author         = {H. Stommel},
# Line 777  Line 861 
861    year =         1997,    year =         1997,
862    volume =       102,    volume =       102,
863    number =       {C3},    number =       {C3},
864    pages =        {5733-5752}    pages =        {5733-5752},
865      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
866  }  }
867    
868  @Article{marshall:97b,  @Article{marshall:97b,
# Line 788  Line 873 
873    year =         1997,    year =         1997,
874    volume =       102,    volume =       102,
875    number =       {C3},    number =       {C3},
876    pages =        {5753-5766}    pages =        {5753-5766},
877      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
878  }  }
879    
880  @Article{adcroft:97,  @Article{adcroft:97,
# Line 798  Line 884 
884    journal =      mwr,    journal =      mwr,
885    year =         1997,    year =         1997,
886    volume =       125,    volume =       125,
887    pages =        {2293-2315}    pages =        {2293-2315},
888      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
889      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
890  }  }
891    
892  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 808  Line 896 
896    journal =      om,    journal =      om,
897    year =         2004,    year =         2004,
898    volume =       7,    volume =       7,
899    pages =        {269-284}    pages =        {269-284},
900      doi   =        {10.1016/j.ocemod.2003.09.003},
901  }  }
902    
903  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 818  Line 907 
907    journal =      mwr,    journal =      mwr,
908    year =         2004,    year =         2004,
909    volume =       132,    volume =       132,
910    pages =        {2845-2863}    pages =        {2845-2863},
911      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
912      doi     =      {10.1175/MWR2823.1},
913    }
914    
915    @inproceedings{adcroft:04c,
916      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
917                      and P. Heimbach},
918      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
919      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
920                     Recent developments in numerical methods for atmosphere and
921                     ocean modelling},
922      year =         2004,
923      pages =        {139-149},
924      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
925     publisher =     ecmwf
926  }  }
927    
928  @Article{marshall:04,  @Article{marshall:04,
# Line 827  Line 931 
931    journal =      mwr,    journal =      mwr,
932    year =         2004,    year =         2004,
933    volume =       132,    volume =       132,
934    pages =        {2882-2894}    pages =        {2882-2894},
935      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
936      doi    =       {10.1175/MWR2835.1},
937  }  }
938    
939  @Article{visbeck:97,  @Article{visbeck:97,
# Line 854  Line 960 
960    pages =        {1-51}    pages =        {1-51}
961  }  }
962    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
963  @Article{mjn:99,  @Article{mjn:99,
964    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
965    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 890  Line 987 
987    journal =      mwr,    journal =      mwr,
988    year =         1999,    year =         1999,
989    volume =       127,    volume =       127,
990    pages =        {1928-1936}    pages =        {1928-1936},
991      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
992      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
993  }  }
994    
995  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 1064  Line 1163 
1163  }  }
1164    
1165  @Article{molteni:03,  @Article{molteni:03,
1166    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1167    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1168                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1169                    multidecadal experiments},                    multidecadal experiments},
1170    journal =      climd,    journal =      climd,
1171    year =         2003,    year =         2003,
# Line 1557  atmospheric boundary layer.}, Line 1656  atmospheric boundary layer.},
1656   volume         = {126},   volume         = {126},
1657   pages          = {991-1000}   pages          = {991-1000}
1658                    }                    }
1659    @TechReport{MPI-std-20,
1660      author =       {{Message Passing Interface Forum}}},
1661      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1662      institution =  {mpi-forum.org},
1663      year =         {1998},
1664    }
1665    
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