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revision 1.17 by jmc, Fri Nov 12 22:23:39 2004 UTC revision 1.33 by jmc, Thu Jan 17 21:28:22 2008 UTC
# Line 5  Line 5 
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
# Line 69  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 116  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{durr:91,
135      author = {Dale R. Durran},
136      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
137               to Leapfrog Time Differencing},
138      journal = mwr,
139      year = {1991},
140      volume = {119},
141      pages  = {702-720},
142    }
143    
144    
145    @ARTICLE{dutk-etal:06,
146      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
147      title = {Controls on ocean productivity and air-sea carbon flux:
148               An adjoint model sensitivity study},
149      journal = grl,
150      year = {2006},
151      volume = {33},
152      pages  = {L02603},
153      doi    = {10.1029/2005GL024987},
154    }
155    
156  @Article{err:97,  @Article{err:97,
157   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 356  Line 392 
392   pages          = {658-669}   pages          = {658-669}
393                    }                    }
394    
395    @Article{jam-oze:86,
396     author         = {B.M. Jamart and J. Ozer},
397     year           = {1986},
398     title          = {Numerical boundary layers and spurious residual flows},
399     journal        = jgr,
400     volume         = {91},
401     pages          = {10,621-10,631}
402                      }
403    
404  @book{kas-eta:00,  @book{kas-eta:00,
405   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
406                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 452  Line 497 
497   pages          = {38 pp.},   pages          = {38 pp.},
498   address        = {Delft (NL)},   address        = {Delft (NL)},
499                    }                    }
500    
501    @ARTICLE{losc-heim:06,
502      author = {M. Losch and P. Heimbach},
503      title = {Adjoint sensitivity of an ocean general circulation model
504               to bottom topography},
505      journal = jpo,
506      year = {2006},
507      volume = {{in press}},
508      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
509    }
510    
511    
512  @Article{maro-wun:93,  @Article{maro-wun:93,
513   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 498  Line 554 
554   pages          = {5,753--5,766},   pages          = {5,753--5,766},
555                    }                    }
556    
557  @Article{mars-sha:98,  @Article{mars-eta:98,
558   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
559   year           = 1998,   year           = 1998,
560   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 506  Line 562 
562   journal        = jms,   journal        = jms,
563   volume         = {18},   volume         = {18},
564   pages          = {115--134},   pages          = {115--134},
565     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
566     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
567                    }                    }
568    
569  @Article{mcw:96,  @Article{mcw:96,
# Line 526  Line 584 
584  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
585  %%   also available.  %%   also available.
586    
587    @incollection{naum-etal:06,
588            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
589            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
590            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
591            Pages = {~},
592            Publisher = {TU Delft},
593            Title = {Adjoint code by source transformation with OpenAD/F},
594            Year = {2006}}
595    
596  @TechReport{rew:97,  @TechReport{rew:97,
597    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
598    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
# Line 572  Line 639 
639   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
640                    }                    }
641    
642    @article{utke-etal:08,
643            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
644            Date-Modified = {2007-11-19 10:15:08 -0500},
645            Journal = {{ACM} Transactions on Mathematical Software},
646            Pages = {~},
647            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
648            Volume = {34(4)},
649            Year = {2008}}
650    
651  @Article{DaSilva94,  @Article{DaSilva94,
652   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
653   year           = 1994,   year           = 1994,
# Line 581  Line 657 
657   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
658   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
659   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
660     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
661                    }                    }
662    
663  @techreport{sta-eta:97,  @techreport{stam-etal:97,
664   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
665                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
666                    C. Hill},                    C. Hill},
# Line 599  Line 676 
676   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
677                    }                    }
678    
679  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
680   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
681                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
682                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
683   year           = 2001,    year = {2002a},
684   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
685                    estimated from ocean observations and a general    pages = {3118},
686                    circulation model},    doi   = {10.1029/2001JC000888},
687   journal        = jgr,  }
688   note           = {in press},  
                   }  
689    
690  @Article{Stommel66,  @Article{Stommel66,
691   author         = {H. Stommel},   author         = {H. Stommel},
# Line 771  Line 847 
847    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
848    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
849                   modeling},                   modeling},
850    journal =      {JGR},    journal =      jgr,
851    year =         1997,    year =         1997,
852    volume =       102,    volume =       102,
853    number =       {C3},    number =       {C3},
854    pages =        {5733-5752}    pages =        {5733-5752},
855      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
856  }  }
857    
858  @Article{marshall:97b,  @Article{marshall:97b,
859    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
860    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
861                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
862    journal =      {JGR},    journal =      jgr,
863    year =         1997,    year =         1997,
864    volume =       102,    volume =       102,
865    number =       {C3},    number =       {C3},
866    pages =        {5753-5766}    pages =        {5753-5766},
867      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
868  }  }
869    
870  @Article{adcroft:97,  @Article{adcroft:97,
871    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
872    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
873                    coordinate ocean model},                    coordinate ocean model},
874    journal =      {MWR},    journal =      mwr,
875    year =         1997,    year =         1997,
876    volume =       125,    volume =       125,
877    pages =        {2293-2315}    pages =        {2293-2315},
878      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
879      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
880  }  }
881    
882  @Article{adcroft:04,  @Article{adcroft:04a,
883    author =       {Adcroft, A.J. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
884    title =        {Re-scaled height coordinates for accurate representation    title =        {Re-scaled height coordinates for accurate representation
885                    of free-surface flows in ocean circulation models},                    of free-surface flows in ocean circulation models},
886    journal =      om,    journal =      om,
887    year =         2004,    year =         2004,
888    note =         {in press}    volume =       7,
889      pages =        {269-284},
890      doi   =        {10.1016/j.ocemod.2003.09.003},
891    }
892    
893    @Article{adcroft:04b,
894      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
895      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
896                      on the Expanded Spherical Cube},
897      journal =      mwr,
898      year =         2004,
899      volume =       132,
900      pages =        {2845-2863},
901      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
902      doi     =      {10.1175/MWR2823.1},
903    }
904    
905    @inproceedings{adcroft:04c,
906      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
907                      and P. Heimbach},
908      title =        {Overview of the Formulation and Numerics of the MIT GCM},
909      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
910                     Recent developments in numerical methods for atmosphere and
911                     ocean modelling},
912      year =         2004,
913      pages =        {139-149},
914      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
915     publisher =     ecmwf
916    }
917    
918    @Article{marshall:04,
919      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
920      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
921      journal =      mwr,
922      year =         2004,
923      volume =       132,
924      pages =        {2882-2894},
925      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
926      doi    =       {10.1175/MWR2835.1},
927  }  }
928    
929  @Article{visbeck:97,  @Article{visbeck:97,
930    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
931    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
932                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
933    journal =      {JPO},    journal =      jpo,
934    year =         1997,    year =         1997,
935    volume =       27,    volume =       27,
936    number =       3,    number =       3,
# Line 832  Line 950 
950    pages =        {1-51}    pages =        {1-51}
951  }  }
952    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
953  @Article{mjn:99,  @Article{mjn:99,
954    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
955    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 865  Line 974 
974    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
975    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
976                    at both high and low resolutions},                    at both high and low resolutions},
977    journal =      {MWR},    journal =      mwr,
978    year =         1999,    year =         1999,
979    volume =       127,    volume =       127,
980    pages =        {1928-1936}    pages =        {1928-1936},
981      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
982      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
983  }  }
984    
985  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 883  Line 994 
994  @Article{wardle:00,  @Article{wardle:00,
995    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
996    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
997    journal =      {JPO},    journal =      jpo,
998    year =         2000,    year =         2000,
999    volume =       30,    volume =       30,
1000    number =       10,    number =       10,
# Line 900  Line 1011 
1011  }  }
1012    
1013  @Article{adcroft:02,  @Article{adcroft:02,
1014    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
1015    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
1016    journal =      om,    journal =      om,
1017    year =         2002,    year =         2002,
# Line 918  Line 1029 
1029    volume =       17    volume =       17
1030  }  }
1031    
1032    @Article{miller_white:84,
1033      author =       {Miller, M. J. and White, A. A.},
1034      title =        {On the non-hydrostatic equations in pressure
1035                      and sigma coordiantes},
1036      journal =      qjrms,
1037      year =         1984,
1038      volume =       110,
1039      pages =        {515-533}
1040    }
1041    
1042    @Article{white:89,
1043      author =       {White, A. A.},
1044      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1045      journal =      qjrms,
1046      year =         1989,
1047      volume =       115,
1048      pages =        {1243-1251}
1049    }
1050    
1051  @Article{adcroft:98,  @Article{adcroft:98,
1052    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1053    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 941  Line 1071 
1071    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1072    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1073                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1074    journal =      {MWR},    journal =      mwr,
1075    year =         2000,    year =         2000,
1076    volume =       128,    volume =       128,
1077    number =       8,    number =       8,
# Line 952  Line 1082 
1082    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1083    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1084                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1085    journal =      {JCP},    journal =      jcp,
1086    year =         1993,    year =         1993,
1087    volume =       105,    volume =       105,
1088    number =       2,    number =       2,
# Line 971  Line 1101 
1101  @Article{dm:95,  @Article{dm:95,
1102    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1103    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1104    journal =      {JC},    journal =      jclim,
1105    year =         1995,    year =         1995,
1106    volume =       8,    volume =       8,
1107    number =       12,    number =       12,
# Line 981  Line 1111 
1111  @Article{ldd:97,  @Article{ldd:97,
1112    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1113    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1114    journal =      {JPO},    journal =      jpo,
1115    year =         1997,    year =         1997,
1116    volume =       27,    volume =       27,
1117    number =       11,    number =       11,
# Line 992  Line 1122 
1122    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1123    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1124                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1125    journal =      {JPO},    journal =      jpo,
1126    year =         1999,    year =         1999,
1127    volume =       29,    volume =       29,
1128    number =       8,    number =       8,
# Line 1023  Line 1153 
1153  }  }
1154    
1155  @Article{molteni:03,  @Article{molteni:03,
1156    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1157    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1158                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1159                    multidecadal experiments},                    multidecadal experiments},
1160    journal =      climd,    journal =      climd,
1161    year =         2003,    year =         2003,
# Line 1034  Line 1164 
1164  }  }
1165    
1166  @Article{jiang99,  @Article{jiang99,
1167    author =       {Shi Jiang and Peter H. Stone and Paola    author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
                   Malanotte-Rizzoli},  
1168    title =        {An Assessment of the {G}eophysical {F}luid    title =        {An Assessment of the {G}eophysical {F}luid
1169                    {D}ynamics {L}aboratory Ocean Model with Coarse                    {D}ynamics {L}aboratory Ocean Model with Coarse
1170                    Resolution: Annual-Mean Climatology},                    Resolution: Annual-Mean Climatology},
# Line 1159  Line 1288 
1288    VOLUME      = 105,    VOLUME      = 105,
1289    PAGES       = "3325-3338"    PAGES       = "3325-3338"
1290  }  }
1291    
1292    @Article{Shapiro_70,
1293      author =       {Shapiro, R.},
1294      title =        {Smoothing, filtering, and boundary effects},
1295      journal =      {Reviews of Geophysics and Space Physics},
1296      year =         {1970},
1297      volume =       {8},
1298      number =       {2},
1299      pages =        {359--387},
1300    }
1301    
1302    @TechReport{Dutkiewicz_etal_05,
1303      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1304      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1305                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1306                      in Climate Change Studies, Report 122},
1307      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1308      year =         {2005},
1309      OPTnumber =    {122},
1310      address =      {Cambridge, MA},
1311      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1312    }
1313    
1314    @Article{Follows_etal_05,
1315      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1316      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1317                      Biogeochemistry Models},
1318      journal =      {Ocean Modeling},
1319      year =         {{in press}},
1320      OPTkey =       {},
1321      OPTvolume =    {},
1322      OPTnumber =    {},
1323      OPTpages =     {},
1324    }
1325    
1326    @Article{McKinley_etal_04,
1327      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1328      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1329                      Equatorial Pacific and the North Atlantic},
1330      journal =      {Global Biogeochemical Cycles},
1331      year =         {2004},
1332      OPTkey =       {},
1333      volume =       {18},
1334      number =       {doi:10.1029/2003GB002179},
1335      OPTpages =     {},
1336    }
1337    
1338    @TechReport{Trenberth_etal_89,
1339      author =       {K. Trenberth and J. Olson and W. Large},
1340      title =        {A global wind stress climatology based on ECMWF analyses},
1341      institution =  {NCAR},
1342      year =         {1989},
1343      OPTkey =       {},
1344      OPTtype =      {},
1345      number =       {NCAR/TN-338+STR},
1346      address =      {Boulder, CO},
1347      OPTmonth =     {},
1348    }
1349    
1350    @Article{Wanninkhof_92,
1351      author =       {R. Wanninkhof},
1352      title =        {Relationship between wind speed and gas exchange over the ocean},
1353      journal =      jgr,
1354      year =         {1992},
1355      OPTkey =       {},
1356      volume =       {97},
1357      OPTnumber =    {},
1358      pages =        {7373--7382},
1359      OPTmonth =     {},
1360    }
1361    
1362    @incollection{black:77,
1363     author       = {A. K. Blackadar},
1364     year         = {1977},
1365     title        = {High Resolution Models of the Planetary Boundary Layer.},
1366     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1367     editor       = {Pfafflin and Zeigler},
1368     publisher    = {Gordon and Breach, Scientific Publishers}
1369    }
1370    
1371    @Article{chou:92,
1372     author       = {M-D. Chou},
1373     year         = {1992},
1374     title        = {A solar radiation model for use in climate studies.},
1375     journal      = jas,
1376     volume       = {49},
1377     pages        = {762-772}
1378    }
1379    
1380    @Article{chou:90,
1381     author       = {M-D. Chou},
1382     year         = {1990},
1383     title        = {Parameterizations for the absorption of solar radiation
1384                       by O$_2$ and CO$_2$ with applications to climate studies.},
1385     journal      = jclim,
1386     volume       = {3},
1387     pages        = {209-217}
1388    }
1389    
1390    @techreport{chsz:94,
1391     author       = {M.-D. Chou and M.J.Suarez},
1392     year         = {1994},
1393     title        = {An efficient thermal infrared radiation parameterization
1394    for use in general circulation models},
1395     institution  = {National Aeronautics and Space Administration},
1396     type         = {NASA Technical Memorandum},
1397     number       = {104606-Vol 3},
1398     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1399     note         = {http://www.gmao.nasa.gov/}
1400    }
1401    
1402    @Article{clarke:70,
1403     author       = {R. H. Clarke},
1404     year         = {1970},
1405     title        = {Observational studies in the atmospheric boundary layer.},
1406     journal      = qjrms,
1407     volume       = {96},
1408     pages        = {91-114}
1409    }
1410    
1411    @Article{deftow:94,
1412     author       = { R. S. Defries and J. R. G. Townshend},
1413     year         = {1994},
1414     title        = {NDVI-derived Land Cover Classification at Global Scales. },
1415     journal      = {Int'l J. Rem. Sens.} ,
1416     volume       = {15},
1417     pages        = {3567-3586}
1418    }
1419    
1420    @Article{dorsell:89,
1421     author       = { J. L. Dorman and P. J. Sellers},
1422     year         = {1989},
1423     title        = {A global climatology of albedo, roughness length and stomatal
1424    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1425     journal      = jam,
1426     volume       = {28},
1427     pages        = {833-855}
1428    }
1429    
1430    @Article{helflab:88,
1431     author       = { H. M. Helfand and J. C. Labraga},
1432     year         = {1988},
1433     title        = { Design of a non-singular level 2.5 second-order closure
1434    model for the prediction of atmospheric turbulence. },
1435     journal      = jas,
1436     volume       = {45},
1437     pages        = {113-132}
1438    }
1439    
1440    @inproceedings{helfetal:91,
1441     author       = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1442     year         = {1991},
1443     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1444     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1445     year         = 1991,
1446     pages        = {406-425},
1447     publisher    = {American Meteorological Society}
1448    }
1449    
1450    @Article{helfschu:95,
1451     author       = {H. M. Helfand and S. D. Schubert},
1452     year         = {1995},
1453     title        = { Climatology of the
1454    Simulated Great Plains Low-Level Jet and Its contribution to the
1455    Continental Moisture Budget of the United States. },
1456     journal      = jclim,
1457     volume       = {8},
1458     pages        = {784-806}
1459    }
1460    
1461    @Article{kondo:75,
1462     author       = {J. Kondo},
1463     year         = {1975},
1464     title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
1465     journal      = blm,
1466     volume       = {9},
1467     pages        = {91-112}
1468    }
1469    
1470    @techreport{ks:91,
1471     author       = { Randal D. Koster and Max J. Suarez},
1472     year         = {1991},
1473     title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1474     institution  = {National Aeronautics and Space Administration},
1475     type         = {NASA Technical Memorandum},
1476     number       = {104538},
1477     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1478     note         = {http://www.gmao.nasa.gov/},
1479    }
1480    
1481    @Article{ks:92,
1482     author       = { Randal D. Koster and Max J. Suarez},
1483     year         = {1992},
1484     title        = { Modeling the Land Surface Boundary
1485    in Climate Models as a Composite of Independent Vegetation Stands.},
1486     journal      = jgr,
1487     volume       = {97},
1488     pages        = {2697-2715}
1489    }
1490    
1491    @Article{lhans:74,
1492     author       = {A. A. Lacis and J. E. Hansen},
1493     year         = {1974},
1494     title        = { A parameterization for the absorption of solar radiation
1495    in the Earth's atmosphere.  },
1496     journal      = jas,
1497     volume       = {31},
1498     pages        = {118-133}
1499    }
1500    
1501    @Article{larpond:81,
1502     author       = {W. G. Large and S. Pond},
1503     year         = {1981},
1504     title        = {Open ocean momentum flux measurements in moderate to strong winds.},
1505     journal      = jpo,
1506     volume       = {11},
1507     pages        = {324-336}
1508    }
1509    
1510    @Article{moorsz:92,
1511     author       = {S. Moorthi and M. J. Suarez},
1512     year         = {1992},
1513     title        = {  Relaxed Arakawa Schubert: A parameterization of moist
1514    convection for general circulation models.},
1515     journal      = mwr,
1516     volume       = {120},
1517     pages        = {978-1002}
1518    }
1519    
1520    @incollection{pano:73,
1521     author       = {H. A. Panofsky},
1522     year         = {1973},
1523     title        = {Tower Micrometeorology. },
1524     booktitle    = {Workshop on Micrometeorology},
1525     editor       = {D. A. Haugen},
1526     publisher    = {American Meteorological Society}
1527    }
1528    
1529    @Article{reynetal:94,
1530     author       = {R. W. Reynolds and T. M. Smith},
1531     year         = {1994},
1532     title        = {Improved global sea surface temperature analyses using optimum interpolation.},
1533     journal      = jclim,
1534     volume       = {7},
1535     pages        = {929-948}
1536    }
1537    
1538    @Article{rosen:87,
1539     author       = {J. E. Rosenfield and M. R. Schoeberl and M. A. Geller},
1540     year         = {1987},
1541     title        = {  A computation of the stratospheric
1542    diabatic circulation using an accurate radiative transfer model},
1543     journal      = jas,
1544     volume       = {44},
1545     pages        = {859-876}
1546    }
1547    
1548    @Article{sudm:88,
1549     author       = {Y. C. Sud and A. Molod},
1550     year         = {1988},
1551     title        = {  The roles of dry convection, cloud-radiation feedback processes
1552    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1553     journal      = mwr,
1554     volume       = {116},
1555     pages        = {2366-2387}
1556    }
1557    
1558    @techreport{taksz:96,
1559     author       = {L. L. Takacs and M.J. Suarez},
1560     year         = {1996},
1561     title        = {  Dynamical aspects of climate simulations Using the GEOS
1562    General Circulation Model},
1563     institution  = {National Aeronautics and Space Administration},
1564     type         = {NASA Technical Memorandum},
1565     number       = {104606 Volume 10},
1566     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1567     note         = {http://www.gmao.nasa.gov/},
1568    }
1569    
1570    @Article{yagkad:74,
1571     author       = {A. M. Yaglom and B. A. Kader},
1572     year         = {1974},
1573     title        = {Heat and mass transfer between a rough wall and
1574    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1575     journal      = jfm,
1576     volume       = {62},
1577     pages        = {601-623}
1578    }
1579    
1580    @Article{yam:77,
1581     author       = {T. Yamada},
1582     year         = {1977},
1583     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1584    atmospheric boundary layer.},
1585     journal      = {Atmos. Environ.},
1586     volume       = {11},
1587     pages        = {1015-1024}
1588    }
1589    
1590    @Article{zhouetal:95,
1591     author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1592     year         = {1995},
1593     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1594     journal      = qjrms,
1595     volume       = {122},
1596     pages        = {903-927}
1597    }
1598    
1599    @Article{breth:99,
1600     author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1601                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1602                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1603                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1604     year           = 1999,
1605     title          = {An intercomparison of radiatively driven entrainment and turbulence
1606                      in a smoke cloud, as simulated by different numerical models.},
1607     journal        = qjrms,
1608     volume         = {125},
1609     pages          = {391-423}
1610                      }
1611    
1612    @Article{bm:99,
1613     author         = {A. C. Bushell and G.M. Martin},
1614     year           = 1999,
1615     title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1616     journal        = {Climate Dyn.},
1617     volume         = {15},
1618     pages          = {293-318}
1619                      }
1620    
1621    @Article{Inn:01,
1622     author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1623     year           = 2001,
1624     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1625                      Implications for the Simulation of the Madden-Julian Oscillation.},
1626     journal        = {Climate Dyn.},
1627     volume         = {17},
1628     pages          = {777-794}
1629                      }
1630    
1631    @Article{kal:89,
1632     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1633                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1634     year           = 1989,
1635     title          = {Rules for Interchange of Physical Parameterizations.},
1636     journal        = bams,
1637     volume         = {70},
1638     pages          = {620-622}
1639                      }
1640    
1641    @Article{wo:98,
1642     author         = {D. Williamson and J.G. Olsen},
1643     year           = 1998,
1644     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1645     journal        = mwr,
1646     volume         = {126},
1647     pages          = {991-1000}
1648                      }
1649    @TechReport{MPI-std-20,
1650      author =       {{Message Passing Interface Forum}}},
1651      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1652      institution =  {mpi-forum.org},
1653      year =         {1998},
1654    }
1655    
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