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revision 1.24 by jmc, Wed Aug 31 18:51:42 2005 UTC revision 1.30 by edhill, Tue Jul 18 04:13:49 2006 UTC
# Line 5  Line 5 
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
# Line 69  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 116  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{dutk-etal:06,
135      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
136      title = {Controls on ocean productivity and air-sea carbon flux:
137               An adjoint model sensitivity study},
138      journal = grl,
139      year = {2006},
140      volume = {33},
141      pages  = {L02603},
142      doi    = {10.1029/2005GL024987},
143    }
144    
145  @Article{err:97,  @Article{err:97,
146   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 452  Line 477 
477   pages          = {38 pp.},   pages          = {38 pp.},
478   address        = {Delft (NL)},   address        = {Delft (NL)},
479                    }                    }
480    
481    @ARTICLE{losc-heim:06,
482      author = {M. Losch and P. Heimbach},
483      title = {Adjoint sensitivity of an ocean general circulation model
484               to bottom topography},
485      journal = jpo,
486      year = {2006},
487      volume = {{in press}},
488      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
489    }
490    
491    
492  @Article{maro-wun:93,  @Article{maro-wun:93,
493   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 506  Line 542 
542   journal        = jms,   journal        = jms,
543   volume         = {18},   volume         = {18},
544   pages          = {115--134},   pages          = {115--134},
545     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
546     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
547                    }                    }
548    
549  @Article{mcw:96,  @Article{mcw:96,
# Line 581  Line 619 
619   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
620   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
621   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
622     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
623                    }                    }
624    
625  @techreport{sta-eta:97,  @techreport{sta-eta:97,
# Line 599  Line 638 
638   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
639                    }                    }
640    
641  @Article{sta-eta:01,  @ARTICLE{stam-eta:01,
642   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
643                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
644                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
645   year           = 2001,    year = {2002a},
646   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
647                    estimated from ocean observations and a general    pages = {3118},
648                    circulation model},    doi   = {10.1029/2001JC000888},
649   journal        = jgr,  }
650   note           = {in press},  
                   }  
651    
652  @Article{Stommel66,  @Article{Stommel66,
653   author         = {H. Stommel},   author         = {H. Stommel},
# Line 771  Line 809 
809    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
810    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
811                   modeling},                   modeling},
812    journal =      {JGR},    journal =      jgr,
813    year =         1997,    year =         1997,
814    volume =       102,    volume =       102,
815    number =       {C3},    number =       {C3},
816    pages =        {5733-5752}    pages =        {5733-5752},
817      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
818  }  }
819    
820  @Article{marshall:97b,  @Article{marshall:97b,
821    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
822    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
823                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
824    journal =      {JGR},    journal =      jgr,
825    year =         1997,    year =         1997,
826    volume =       102,    volume =       102,
827    number =       {C3},    number =       {C3},
828    pages =        {5753-5766}    pages =        {5753-5766},
829      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
830  }  }
831    
832  @Article{adcroft:97,  @Article{adcroft:97,
833    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
834    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
835                    coordinate ocean model},                    coordinate ocean model},
836    journal =      {MWR},    journal =      mwr,
837    year =         1997,    year =         1997,
838    volume =       125,    volume =       125,
839    pages =        {2293-2315}    pages =        {2293-2315},
840      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
841      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
842  }  }
843    
844  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 806  Line 848 
848    journal =      om,    journal =      om,
849    year =         2004,    year =         2004,
850    volume =       7,    volume =       7,
851    pages =        {269-284}    pages =        {269-284},
852      doi   =        {10.1016/j.ocemod.2003.09.003},
853  }  }
854    
855  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 816  Line 859 
859    journal =      mwr,    journal =      mwr,
860    year =         2004,    year =         2004,
861    volume =       132,    volume =       132,
862    pages =        {2845-2863}    pages =        {2845-2863},
863      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
864      doi     =      {10.1175/MWR2823.1},
865  }  }
866    
867  @Article{marshall:04,  @Article{marshall:04,
# Line 825  Line 870 
870    journal =      mwr,    journal =      mwr,
871    year =         2004,    year =         2004,
872    volume =       132,    volume =       132,
873    pages =        {2882-2894}    pages =        {2882-2894},
874      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
875      doi    =       {10.1175/MWR2835.1},
876  }  }
877    
878  @Article{visbeck:97,  @Article{visbeck:97,
879    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
880    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
881                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
882    journal =      {JPO},    journal =      jpo,
883    year =         1997,    year =         1997,
884    volume =       27,    volume =       27,
885    number =       3,    number =       3,
# Line 852  Line 899 
899    pages =        {1-51}    pages =        {1-51}
900  }  }
901    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
902  @Article{mjn:99,  @Article{mjn:99,
903    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
904    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 885  Line 923 
923    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
924    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
925                    at both high and low resolutions},                    at both high and low resolutions},
926    journal =      {MWR},    journal =      mwr,
927    year =         1999,    year =         1999,
928    volume =       127,    volume =       127,
929    pages =        {1928-1936}    pages =        {1928-1936},
930      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
931      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
932  }  }
933    
934  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 903  Line 943 
943  @Article{wardle:00,  @Article{wardle:00,
944    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
945    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
946    journal =      {JPO},    journal =      jpo,
947    year =         2000,    year =         2000,
948    volume =       30,    volume =       30,
949    number =       10,    number =       10,
# Line 920  Line 960 
960  }  }
961    
962  @Article{adcroft:02,  @Article{adcroft:02,
963    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
964    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
965    journal =      om,    journal =      om,
966    year =         2002,    year =         2002,
# Line 942  Line 982 
982    author =       {Miller, M. J. and White, A. A.},    author =       {Miller, M. J. and White, A. A.},
983    title =        {On the non-hydrostatic equations in pressure    title =        {On the non-hydrostatic equations in pressure
984                    and sigma coordiantes},                    and sigma coordiantes},
985    journal =      {qjrms},    journal =      qjrms,
986    year =         1984,    year =         1984,
987    volume =       110,    volume =       110,
988    pages =        {515-533}    pages =        {515-533}
# Line 951  Line 991 
991  @Article{white:89,  @Article{white:89,
992    author =       {White, A. A.},    author =       {White, A. A.},
993    title =        {An extended version of a nonhydrostatic, pressure coordiante model},    title =        {An extended version of a nonhydrostatic, pressure coordiante model},
994    journal =      {qjrms},    journal =      qjrms,
995    year =         1989,    year =         1989,
996    volume =       115,    volume =       115,
997    pages =        {1243-1251}    pages =        {1243-1251}
# Line 980  Line 1020 
1020    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1021    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1022                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1023    journal =      {MWR},    journal =      mwr,
1024    year =         2000,    year =         2000,
1025    volume =       128,    volume =       128,
1026    number =       8,    number =       8,
# Line 991  Line 1031 
1031    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1032    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1033                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1034    journal =      {JCP},    journal =      jcp,
1035    year =         1993,    year =         1993,
1036    volume =       105,    volume =       105,
1037    number =       2,    number =       2,
# Line 1010  Line 1050 
1050  @Article{dm:95,  @Article{dm:95,
1051    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1052    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1053    journal =      {JC},    journal =      jclim,
1054    year =         1995,    year =         1995,
1055    volume =       8,    volume =       8,
1056    number =       12,    number =       12,
# Line 1020  Line 1060 
1060  @Article{ldd:97,  @Article{ldd:97,
1061    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1062    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1063    journal =      {JPO},    journal =      jpo,
1064    year =         1997,    year =         1997,
1065    volume =       27,    volume =       27,
1066    number =       11,    number =       11,
# Line 1031  Line 1071 
1071    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1072    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1073                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1074    journal =      {JPO},    journal =      jpo,
1075    year =         1999,    year =         1999,
1076    volume =       29,    volume =       29,
1077    number =       8,    number =       8,
# Line 1062  Line 1102 
1102  }  }
1103    
1104  @Article{molteni:03,  @Article{molteni:03,
1105    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1106    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1107                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1108                    multidecadal experiments},                    multidecadal experiments},
1109    journal =      climd,    journal =      climd,
1110    year =         2003,    year =         2003,
# Line 1237  Line 1277 
1277    title =        {Mechanisms of air-sea CO$_2$ flux variability in the    title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1278                    Equatorial Pacific and the North Atlantic},                    Equatorial Pacific and the North Atlantic},
1279    journal =      {Global Biogeochemical Cycles},    journal =      {Global Biogeochemical Cycles},
1280    year =         {},    year =         {2004},
1281    OPTkey =       {},    OPTkey =       {},
1282    volume =       {18},    volume =       {18},
1283    number =       {doi:10.1029/2003GB002179},    number =       {doi:10.1029/2003GB002179},
# Line 1555  atmospheric boundary layer.}, Line 1595  atmospheric boundary layer.},
1595   volume         = {126},   volume         = {126},
1596   pages          = {991-1000}   pages          = {991-1000}
1597                    }                    }
1598    @TechReport{MPI-std-20,
1599      author =       {{Message Passing Interface Forum}}},
1600      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1601      institution =  {mpi-forum.org},
1602      year =         {1998},
1603    }
1604    
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