--- manual/manual_references.bib 2004/10/13 05:06:25 1.16 +++ manual/manual_references.bib 2006/06/28 14:06:13 1.28 @@ -5,8 +5,10 @@ @string{jgr = {J.~Geophys.~Res.}} @string{ijrs = {Int.~J.~Remote Sensing}} @string{jas = {J.~Atmos.~Sci.}} +@string{jam = {J.~Appl.~Meteor.}} @string{jpo = {J.~Phys.~Oceanogr.}} @string{jclim = {J.~Clim.}} +@string{jcp = {J.~Comput.~Phys.}} @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}} @string{jfm = {J.~Fluid Mech.}} @string{jaot = {J.~Atmos.~Ocean.~Technol.}} @@ -581,6 +583,7 @@ publisher = {U.S. Department of Commerce}, address = {Washington, D.C. (USA)}, note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, + url = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, } @techreport{sta-eta:97, @@ -771,7 +774,7 @@ author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean modeling}, - journal = {JGR}, + journal = jgr, year = 1997, volume = 102, number = {C3}, @@ -782,7 +785,7 @@ author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, title = {A finite-volume, incompressible Navier Stokes model for studies of the ocean on parallel computers}, - journal = {JGR}, + journal = jgr, year = 1997, volume = 102, number = {C3}, @@ -793,26 +796,47 @@ author = {Adcroft, A.J. and Hill, C.N. and J. Marshall}, title = {Representation of topography by shaved cells in a height coordinate ocean model}, - journal = {MWR}, + journal = mwr, year = 1997, volume = 125, pages = {2293-2315} } -@Article{adcroft:04, - author = {Adcroft, A.J. and J.-M. Campin}, +@Article{adcroft:04a, + author = {Adcroft, A. and J.-M. Campin}, title = {Re-scaled height coordinates for accurate representation of free-surface flows in ocean circulation models}, journal = om, year = 2004, - note = {in press} + volume = 7, + pages = {269-284}, + doi = {10.1016/j.ocemod.2003.09.003}, +} + +@Article{adcroft:04b, + author = {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall}, + title = {Implementation of an Atmosphere-Ocean General Circulation Model + on the Expanded Spherical Cube}, + journal = mwr, + year = 2004, + volume = 132, + pages = {2845-2863} +} + +@Article{marshall:04, + author = {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White}, + title = {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms}, + journal = mwr, + year = 2004, + volume = 132, + pages = {2882-2894} } @Article{visbeck:97, author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, title = {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models}, - journal = {JPO}, + journal = jpo, year = 1997, volume = 27, number = 3, @@ -865,7 +889,7 @@ author = {Adcroft, A., Hill C. and J. Marshall}, title = {A new treatment of the Coriolis terms in C-grid models at both high and low resolutions}, - journal = {MWR}, + journal = mwr, year = 1999, volume = 127, pages = {1928-1936} @@ -883,7 +907,7 @@ @Article{wardle:00, author = {Wardle R. and Marshall J.}, title = {Representation of eddies in primitive equation models by a PV flux}, - journal = {JPO}, + journal = jpo, year = 2000, volume = 30, number = 10, @@ -900,7 +924,7 @@ } @Article{adcroft:02, - author = {Adcroft et al.}, + author = {Adcroft, A., et~al.}, title = {Energy conversion in discrete numerical models}, journal = om, year = 2002, @@ -918,6 +942,25 @@ volume = 17 } +@Article{miller_white:84, + author = {Miller, M. J. and White, A. A.}, + title = {On the non-hydrostatic equations in pressure + and sigma coordiantes}, + journal = qjrms, + year = 1984, + volume = 110, + pages = {515-533} +} + +@Article{white:89, + author = {White, A. A.}, + title = {An extended version of a nonhydrostatic, pressure coordiante model}, + journal = qjrms, + year = 1989, + volume = 115, + pages = {1243-1251} +} + @Article{adcroft:98, author = {Adcroft, A. and Marshall, D.}, title = {How slippery are piecewise-constant coastlines in numerical @@ -941,7 +984,7 @@ author = {Griffies, S.,M. and Hallberg, R.,W.}, title = {Biharmonic friction with a Smagorinsky-like viscosity for use in large-scale eddy-permitting ocean models}, - journal = {MWR}, + journal = mwr, year = 2000, volume = 128, number = 8, @@ -952,7 +995,7 @@ author = {Wajsowicz, R.}, title = {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION}, - journal = {JCP}, + journal = jcp, year = 1993, volume = 105, number = 2, @@ -971,7 +1014,7 @@ @Article{dm:95, author = {Danabasoglu, G. and McWilliams J.C.}, title = {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports}, - journal = {JC}, + journal = jclim, year = 1995, volume = 8, number = 12, @@ -981,7 +1024,7 @@ @Article{ldd:97, author = {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.}, title = {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology}, - journal = {JPO}, + journal = jpo, year = 1997, volume = 27, number = 11, @@ -992,20 +1035,24 @@ author = {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.}, title = {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models}, - journal = {JPO}, + journal = jpo, year = 1999, volume = 29, number = 8, pages = {1682-1700} } -@Article{roe:85, - author = {Roe, P.L.}, - title = {Some contributions to the modeling of discontinuous flows}, - journal = {Lect. Notes Appl. Math.}, - year = 1985, - volume = 22, - pages = {163-193} +@incollection{roe:85, + author = {P.L. Roe}, + year = 1985, + title = {Some contributions to the modelling of discontinuous flows}, + booktitle = {Large-Scale Computations in Fluid Mechanics}, + series = {Lectures in Applied Mathematics}, + volume = 22, + pages = {163-193}, + editor = {B.E. Engquist and S. Osher and R.C.J. Somerville}, + publisher = {American Mathematical Society}, + address = {Providence, RI}, } @Article{trenberth90, @@ -1019,9 +1066,9 @@ } @Article{molteni:03, - author = {K. M. Trenberth and J. Olson and W. G. Large}, + author = {F. Molteni}, title = {Atmospheric simulations using a GCM with simplified physical - parametrization, I model climatology and variability in + parametrizations, I: Model climatology and variability in multidecadal experiments}, journal = climd, year = 2003, @@ -1030,8 +1077,7 @@ } @Article{jiang99, - author = {Shi Jiang and Peter H. Stone and Paola - Malanotte-Rizzoli}, + author = {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli}, title = {An Assessment of the {G}eophysical {F}luid {D}ynamics {L}aboratory Ocean Model with Coarse Resolution: Annual-Mean Climatology}, @@ -1155,3 +1201,368 @@ VOLUME = 105, PAGES = "3325-3338" } + +@Article{Shapiro_70, + author = {Shapiro, R.}, + title = {Smoothing, filtering, and boundary effects}, + journal = {Reviews of Geophysics and Space Physics}, + year = {1970}, + volume = {8}, + number = {2}, + pages = {359--387}, +} + +@TechReport{Dutkiewicz_etal_05, + author = {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone}, + title = {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and + its Coupling to a Two-Dimensional Atmospheric Model: Uses + in Climate Change Studies, Report 122}, + institution = {MIT Joint Program of the Science and Policy of Global Change}, + year = {2005}, + OPTnumber = {122}, + address = {Cambridge, MA}, + note = {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf}, +} + +@Article{Follows_etal_05, + author = {M. Follows and T. Ito and S. Dutkiewicz}, + title = {A Compact and Accurate Carbonate Chemistry Solver for Ocean + Biogeochemistry Models}, + journal = {Ocean Modeling}, + year = {{in press}}, + OPTkey = {}, + OPTvolume = {}, + OPTnumber = {}, + OPTpages = {}, +} + +@Article{McKinley_etal_04, + author = {G. McKinley and M. J. Follows and J. C. Marshall}, + title = {Mechanisms of air-sea CO$_2$ flux variability in the + Equatorial Pacific and the North Atlantic}, + journal = {Global Biogeochemical Cycles}, + year = {2004}, + OPTkey = {}, + volume = {18}, + number = {doi:10.1029/2003GB002179}, + OPTpages = {}, +} + +@TechReport{Trenberth_etal_89, + author = {K. Trenberth and J. Olson and W. Large}, + title = {A global wind stress climatology based on ECMWF analyses}, + institution = {NCAR}, + year = {1989}, + OPTkey = {}, + OPTtype = {}, + number = {NCAR/TN-338+STR}, + address = {Boulder, CO}, + OPTmonth = {}, +} + +@Article{Wanninkhof_92, + author = {R. Wanninkhof}, + title = {Relationship between wind speed and gas exchange over the ocean}, + journal = jgr, + year = {1992}, + OPTkey = {}, + volume = {97}, + OPTnumber = {}, + pages = {7373--7382}, + OPTmonth = {}, +} + +@incollection{black:77, + author = {A. K. Blackadar}, + year = {1977}, + title = {High Resolution Models of the Planetary Boundary Layer.}, + booktitle = {Advances in Environmental Science and Engineering, Vol 1 } , + editor = {Pfafflin and Zeigler}, + publisher = {Gordon and Breach, Scientific Publishers} +} + +@Article{chou:92, + author = {M-D. Chou}, + year = {1992}, + title = {A solar radiation model for use in climate studies.}, + journal = jas, + volume = {49}, + pages = {762-772} +} + +@Article{chou:90, + author = {M-D. Chou}, + year = {1990}, + title = {Parameterizations for the absorption of solar radiation + by O$_2$ and CO$_2$ with applications to climate studies.}, + journal = jclim, + volume = {3}, + pages = {209-217} +} + +@techreport{chsz:94, + author = {M.-D. Chou and M.J.Suarez}, + year = {1994}, + title = {An efficient thermal infrared radiation parameterization +for use in general circulation models}, + institution = {National Aeronautics and Space Administration}, + type = {NASA Technical Memorandum}, + number = {104606-Vol 3}, + address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA}, + note = {http://www.gmao.nasa.gov/} +} + +@Article{clarke:70, + author = {R. H. Clarke}, + year = {1970}, + title = {Observational studies in the atmospheric boundary layer.}, + journal = qjrms, + volume = {96}, + pages = {91-114} +} + +@Article{deftow:94, + author = { R. S. Defries and J. R. G. Townshend}, + year = {1994}, + title = {NDVI-derived Land Cover Classification at Global Scales. }, + journal = {Int'l J. Rem. Sens.} , + volume = {15}, + pages = {3567-3586} +} + +@Article{dorsell:89, + author = { J. L. Dorman and P. J. Sellers}, + year = {1989}, + title = {A global climatology of albedo, roughness length and stomatal +resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).}, + journal = jam, + volume = {28}, + pages = {833-855} +} + +@Article{helflab:88, + author = { H. M. Helfand and J. C. Labraga}, + year = {1988}, + title = { Design of a non-singular level 2.5 second-order closure +model for the prediction of atmospheric turbulence. }, + journal = jas, + volume = {45}, + pages = {113-132} +} + +@inproceedings{helfetal:91, + author = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod}, + year = {1991}, + title = {Simulation of the planetary boundary layer and turbulence in the GLA GCM}, + booktitle = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition}, + year = 1991, + pages = {406-425}, + publisher = {American Meteorological Society} +} + +@Article{helfschu:95, + author = {H. M. Helfand and S. D. Schubert}, + year = {1995}, + title = { Climatology of the +Simulated Great Plains Low-Level Jet and Its contribution to the +Continental Moisture Budget of the United States. }, + journal = jclim, + volume = {8}, + pages = {784-806} +} + +@Article{kondo:75, + author = {J. Kondo}, + year = {1975}, + title = {Air-sea bulk transfer coefficients in diabatic conditions.}, + journal = blm, + volume = {9}, + pages = {91-112} +} + +@techreport{ks:91, + author = { Randal D. Koster and Max J. Suarez}, + year = {1991}, + title = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.}, + institution = {National Aeronautics and Space Administration}, + type = {NASA Technical Memorandum}, + number = {104538}, + address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA}, + note = {http://www.gmao.nasa.gov/}, +} + +@Article{ks:92, + author = { Randal D. Koster and Max J. Suarez}, + year = {1992}, + title = { Modeling the Land Surface Boundary +in Climate Models as a Composite of Independent Vegetation Stands.}, + journal = jgr, + volume = {97}, + pages = {2697-2715} +} + +@Article{lhans:74, + author = {A. A. Lacis and J. E. Hansen}, + year = {1974}, + title = { A parameterization for the absorption of solar radiation +in the Earth's atmosphere. }, + journal = jas, + volume = {31}, + pages = {118-133} +} + +@Article{larpond:81, + author = {W. G. Large and S. Pond}, + year = {1981}, + title = {Open ocean momentum flux measurements in moderate to strong winds.}, + journal = jpo, + volume = {11}, + pages = {324-336} +} + +@Article{moorsz:92, + author = {S. Moorthi and M. J. Suarez}, + year = {1992}, + title = { Relaxed Arakawa Schubert: A parameterization of moist +convection for general circulation models.}, + journal = mwr, + volume = {120}, + pages = {978-1002} +} + +@incollection{pano:73, + author = {H. A. Panofsky}, + year = {1973}, + title = {Tower Micrometeorology. }, + booktitle = {Workshop on Micrometeorology}, + editor = {D. A. Haugen}, + publisher = {American Meteorological Society} +} + +@Article{reynetal:94, + author = {R. W. Reynolds and T. M. Smith}, + year = {1994}, + title = {Improved global sea surface temperature analyses using optimum interpolation.}, + journal = jclim, + volume = {7}, + pages = {929-948} +} + +@Article{rosen:87, + author = {J. E. Rosenfield and M. R. Schoeberl and M. A. Geller}, + year = {1987}, + title = { A computation of the stratospheric +diabatic circulation using an accurate radiative transfer model}, + journal = jas, + volume = {44}, + pages = {859-876} +} + +@Article{sudm:88, + author = {Y. C. Sud and A. Molod}, + year = {1988}, + title = { The roles of dry convection, cloud-radiation feedback processes +and the influence of recent improvements in the parameterization of convection in the GLA GCM. }, + journal = mwr, + volume = {116}, + pages = {2366-2387} +} + +@techreport{taksz:96, + author = {L. L. Takacs and M.J. Suarez}, + year = {1996}, + title = { Dynamical aspects of climate simulations Using the GEOS +General Circulation Model}, + institution = {National Aeronautics and Space Administration}, + type = {NASA Technical Memorandum}, + number = {104606 Volume 10}, + address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA}, + note = {http://www.gmao.nasa.gov/}, +} + +@Article{yagkad:74, + author = {A. M. Yaglom and B. A. Kader}, + year = {1974}, + title = {Heat and mass transfer between a rough wall and +turbulent fluid flow at high Reynolds and Peclet numbers. }, + journal = jfm, + volume = {62}, + pages = {601-623} +} + +@Article{yam:77, + author = {T. Yamada}, + year = {1977}, + title = { A numerical experiment on pollutant dispersion in a horizontally-homogenious +atmospheric boundary layer.}, + journal = {Atmos. Environ.}, + volume = {11}, + pages = {1015-1024} +} + +@Article{zhouetal:95, + author = {J. Zhou and Y.C. Sud and K.-M. Lau}, + year = {1995}, + title = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM}, + journal = qjrms, + volume = {122}, + pages = {903-927} +} + +@Article{breth:99, + author = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond + and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov + and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and + B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant}, + year = 1999, + title = {An intercomparison of radiatively driven entrainment and turbulence + in a smoke cloud, as simulated by different numerical models.}, + journal = qjrms, + volume = {125}, + pages = {391-423} + } + +@Article{bm:99, + author = {A. C. Bushell and G.M. Martin}, + year = 1999, + title = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.}, + journal = {Climate Dyn.}, + volume = {15}, + pages = {293-318} + } + +@Article{Inn:01, + author = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope}, + year = 2001, + title = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution; + Implications for the Simulation of the Madden-Julian Oscillation.}, + journal = {Climate Dyn.}, + volume = {17}, + pages = {777-794} + } + +@Article{kal:89, + author = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and + J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson}, + year = 1989, + title = {Rules for Interchange of Physical Parameterizations.}, + journal = bams, + volume = {70}, + pages = {620-622} + } + +@Article{wo:98, + author = {D. Williamson and J.G. Olsen}, + year = 1998, + title = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.}, + journal = mwr, + volume = {126}, + pages = {991-1000} + } +@TechReport{MPI-std-20, + author = {{Message Passing Interface Forum}}}, + title = {{MPI}: A Message-Passing Interface standard (version 2.0)}, + institution = {mpi-forum.org}, + year = {1998}, +} +