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# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{climd   = {Clim.~Dynamics}}  @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
# Line 32  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    
39  @Article{bis-eta:92,  @Article{bis-eta:92,
40   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 43  Line 46 
46   volume         = {3},   volume         = {3},
47   pages          = {625--638},   pages          = {625--638},
48                    }                    }
49    
50  @incollection{bis:94,  @incollection{bis:94,
51   author         = {C.H. Bishof},   author         = {C.H. Bishof},
52   year           = 1994,   year           = 1994,
# Line 56  Line 59 
59   publisher      = {Kluwer},   publisher      = {Kluwer},
60   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
61                    }                    }
62    
63  @techreport{bis-eta:94,  @techreport{bis-eta:94,
64   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
65                    A. Maurer},                    A. Maurer},
# Line 67  Line 70 
70                    Computer Science Division},                    Computer Science Division},
71   type           = {Argonne Preprint},   type           = {Argonne Preprint},
72   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
73   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
74                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
75   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
76                    }                    }
77    
78    @ARTICLE{bugi-hill:06,
79      author = {V. Bugnion and C. Hill},
80      title = {Equilibration mechanisms in an adjoint ocean general
81               circulation model},
82      journal = {Ocean Dynamics},
83      year = {2006},
84      volume = {56},
85      number = {1},
86      pages = {51-61},
87      doi   = {10.1007/s10236-005-0052-z},
88    }
89    
90  @techreport{bis-roh:97,  @techreport{bis-roh:97,
91   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
92   year           = 1997,   year           = 1997,
# Line 81  Line 96 
96                    Computer Science Division},                    Computer Science Division},
97   type           = {Argonne Preprint},   type           = {Argonne Preprint},
98   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
99   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
100                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
101   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
102                    }                    }
103    
104  @Article{cou-tal:87,  @Article{cou-tal:87,
105   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
106   year           = 1987,   year           = 1987,
107   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
108                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
109                    II: Numerical results},                    II: Numerical results},
110   journal        = qjrms,   journal        = qjrms,
111   volume         = {113},   volume         = {113},
112   pages          = {1329--1347},   pages          = {1329--1347},
113                    }                    }
114    
115  @Article{cou-tal:90,  @Article{cou-tal:90,
116   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
117   year           = 1990,   year           = 1990,
# Line 107  Line 122 
122   volume         = {42A},   volume         = {42A},
123   pages          = {531--549},   pages          = {531--549},
124                    }                    }
125    
126  @Article{cou-eta:94,  @Article{cou-eta:94,
127   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
128                    A. Hollingsworth},                    A. Hollingsworth},
# Line 118  Line 133 
133   volume         = {120},   volume         = {120},
134   pages          = {1367--1387},   pages          = {1367--1387},
135                    }                    }
136    
137    @ARTICLE{durr:91,
138      author = {Dale R. Durran},
139      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
140               to Leapfrog Time Differencing},
141      journal = mwr,
142      year = {1991},
143      volume = {119},
144      pages  = {702-720},
145    }
146    
147    
148    @ARTICLE{dutk-etal:06,
149      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
150      title = {Controls on ocean productivity and air-sea carbon flux:
151               An adjoint model sensitivity study},
152      journal = grl,
153      year = {2006},
154      volume = {33},
155      pages  = {L02603},
156      doi    = {10.1029/2005GL024987},
157    }
158    
159  @Article{err:97,  @Article{err:97,
160   author         = {R.M. Errico},   author         = {R.M. Errico},
161   year           = 1997,   year           = 1997,
# Line 127  Line 164 
164   volume         = {78},   volume         = {78},
165   pages          = {2577--2591},   pages          = {2577--2591},
166                    }                    }
167    
168  @Article{far-moo:92,  @Article{far-moo:92,
169   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
170   year           = {1992},   year           = {1992},
# Line 137  Line 174 
174   volume         = {22},   volume         = {22},
175   pages          = {338--349},   pages          = {338--349},
176                    }                    }
177    
178  @Article{far-ioa:96a,  @Article{far-ioa:96a,
179   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
180   year           = {1996a},   year           = {1996a},
# Line 147  Line 184 
184   volume         = {53},   volume         = {53},
185   pages          = {2025--2040},   pages          = {2025--2040},
186                    }                    }
187    
188  @Article{far-ioa:96b,  @Article{far-ioa:96b,
189   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
190   year           = {1996b},   year           = {1996b},
# Line 157  Line 194 
194   volume         = {53},   volume         = {53},
195   pages          = {2041--2053},   pages          = {2041--2053},
196                    }                    }
197    
198  @techreport{fau-pap:98,  @techreport{fau-pap:98,
199   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
200   year           = 1998,   year           = 1998,
# Line 170  Line 207 
207                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
208   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
209                    }                    }
210    
211  @Article{fau:00,  @Article{fau:00,
212   author         = {C. Faure},   author         = {C. Faure},
213   year           = {2000},   year           = {2000},
# Line 178  Line 215 
215   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
216   note           = {in press},   note           = {in press},
217                    }                    }
218    
219    @Article{fer-eta:05,
220     author         = {D. Ferreira and J. Marshall and P. Heimbach},
221     year           = 2005,
222     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224     journal        = jpo,
225     volume         = {35},
226     pages          = {1891--1910},
227                      }
228    
229    @Article{gas-eta:90,
230     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
231     year           = 1990,
232     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
233                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
234                       Upper Ocean Study Site},
235     journal        = jgr,
236     volume         = {95 (C9)},
237     pages          = {16,179--16,193},
238                      }
239    
240  @Article{gen-mcw:90,  @Article{gen-mcw:90,
241   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
242   year           = 1990,   year           = 1990,
243   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
244   journal        = jpo,   journal        = jpo,
245   volume         = {20},   volume         = {20},
246   pages          = {150--155},   pages          = {150--155},
247                    }                    }
248    
249  @Article{gen-eta:95,  @Article{gen-eta:95,
250   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
251   year           = 1995,   year           = 1995,
252   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
253   journal        = jpo,   journal        = jpo,
254   volume         = {25},   volume         = {25},
255   pages          = {463--474},   pages          = {463--474},
256                    }                    }
257    
258  @Article{gie-kam:98,  @Article{gie-kam:98,
259   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
260   year           = 1998,   year           = 1998,
# Line 211  Line 267 
267  @techreport{gie:99,  @techreport{gie:99,
268   author         = {R. Giering},   author         = {R. Giering},
269   year           = 1999,   year           = 1999,
270   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
271                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
272   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
273   type           = {Report},   type           = {Report},
# Line 220  Line 276 
276                    02139; USA},                    02139; USA},
277   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
278                    }                    }
279    
280  @incollection{gie:00,  @incollection{gie:00,
281   author         = {R. Giering},   author         = {R. Giering},
282   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 244  Line 300 
300   volume         = {45},   volume         = {45},
301   pages          = {407--435},   pages          = {407--435},
302                    }                    }
303    
304  @book{gil-eta:81,  @book{gil-eta:81,
305   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
306   title          = {Practical optimization},   title          = {Practical optimization},
307   year           = 1981,   year           = 1981,
308   publisher      = {Academic Press},   publisher      = {Academic Press},
309   address        = {London},   address        = {London},
310   pages          = {401 pp.},   pages          = {401 pp.},
311                    }                    }
312                                                                      
313  @incollection{gri:89,  @incollection{gri:89,
314   author         = {A. Griewank},   author         = {A. Griewank},
315   year           = 1989,   year           = 1989,
# Line 265  Line 321 
321   publisher      = {Kluwer},   publisher      = {Kluwer},
322   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
323                    }                    }
324    
325  @Article{gri:92,  @Article{gri:92,
326    author =       {A.~Griewank},    author =       {A.~Griewank},
327    title =        {Achieving logarithmic growth of temporal and spatial    title =        {Achieving logarithmic growth of temporal and spatial
# Line 284  Line 340 
340   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
341   volume         = {19},   volume         = {19},
342   publisher      = {SIAM},   publisher      = {SIAM},
343   address        = {Philadelphia},   address        = {Philadelphia},
344   pages          = {369 pp.},   pages          = {369 pp.},
345                    }                    }
346                                                                      
347  @Article{hal-eta:82,  @Article{hal-eta:82,
348   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
349   year           = 1982,   year           = 1982,
# Line 307  Line 363 
363    volume =       1,    volume =       1,
364    pages =        {241--248}    pages =        {241--248}
365  }  }
366    
367  @Article{held-suar:94,  @Article{held-suar:94,
368   author         = {I.M. Held and M.J. Suarez},   author         = {I.M. Held and M.J. Suarez},
369   year           = {1994},   year           = {1994},
# Line 316  Line 372 
372   volume         = {75(10)},   volume         = {75(10)},
373   pages          = {1825-1830}   pages          = {1825-1830}
374  }  }
375    
376  @Article{hil-eta:01,  @Article{hil-eta:01,
377   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
378                    J. Marshall},                    J. Marshall},
379   year           = {2002},   year           = {2002},
380   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
381                    circulation on carbon sequestration},                    circulation on carbon sequestration},
382   journal        = {Global Biogeochemical Cycles},   journal        = {Global Biogeochemical Cycles},
383   note           = {submitted},   note           = {submitted},
384                    }                    }
385    
386  @ARTICLE{hib80,  @ARTICLE{hib80,
387    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, William D.},
388    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",    TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
389    JOURNAL     = mwr,    JOURNAL     = mwr,
390    YEAR        = 1980,    YEAR        = 1980,
# Line 339  Line 395 
395  @Article{Holland75,  @Article{Holland75,
396   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
397   year           = {1975a},   year           = {1975a},
398   title          = {On the origin of mesoscale eddies and their contribution   title          = {On the origin of mesoscale eddies and their contribution
399                     to the general circulation of the ocean. I. A preliminary                     to the general circulation of the ocean. I. A preliminary
400                     numerical experiment},                     numerical experiment},
401   journal        = jpo,   journal        = jpo,
402   volume         = {5},   volume         = {5},
# Line 350  Line 406 
406  @Article{hol-lin:75b,  @Article{hol-lin:75b,
407   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
408   year           = {1975b},   year           = {1975b},
409   title          = {On the origin of mesoscale eddies and their contribution   title          = {On the origin of mesoscale eddies and their contribution
410                     to the general circulation of the ocean. II. A parameter                     to the general circulation of the ocean. II. A parameter
411                     study},                     study},
412   journal        = jpo,   journal        = jpo,
# Line 358  Line 414 
414   pages          = {658-669}   pages          = {658-669}
415                    }                    }
416    
417    @Article{jam-oze:86,
418     author         = {B.M. Jamart and J. Ozer},
419     year           = {1986},
420     title          = {Numerical boundary layers and spurious residual flows},
421     journal        = jgr,
422     volume         = {91},
423     pages          = {10,621-10,631}
424                      }
425    
426  @book{kas-eta:00,  @book{kas-eta:00,
427   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
428                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 373  Line 438 
438  @Article{lar-eta:94,  @Article{lar-eta:94,
439   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
440   year           = 1994,   year           = 1994,
441   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
442   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
443   volume         = {32},   volume         = {32},
444   pages          = {363--403},   pages          = {363--403},
445                    }                    }
446    
447  @Article{lar-eta:97,  @Article{lar-eta:97,
448   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
449                    and J.C. McWilliams},                    and J. C. McWilliams},
450   year           = 1997,   year           = 1997,
451   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
452                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
453   journal        = jpo,   journal        = jpo,
454   volume         = {27},   volume         = {27},
455     number         = 11,
456   pages          = {2418--2447},   pages          = {2418--2447},
457                    }                    }
458    
459  @Article{led-tal:86,  @Article{led-tal:86,
460   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
461   year           = 1986,   year           = 1986,
# Line 432  Line 496 
496    OPTannote =    {}    OPTannote =    {}
497  }  }
498    
499    
500  @Article{lew-der:85,  @Article{lew-der:85,
501   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
502   year           = {1985},   year           = {1985},
# Line 442  Line 506 
506   volume         = {37A},   volume         = {37A},
507   pages          = {309--322},   pages          = {309--322},
508                    }                    }
509    
510  @techreport{lon:88,  @techreport{lon:88,
511   author         = {R.B. Long},   author         = {R.B. Long},
512   year           = 1988,   year           = 1988,
# Line 454  Line 518 
518   pages          = {38 pp.},   pages          = {38 pp.},
519   address        = {Delft (NL)},   address        = {Delft (NL)},
520                    }                    }
521    
522    @ARTICLE{losc-heim:06,
523      author =       {Martin Losch and Patrick Heimbach},
524      title =        {Adjoint Sensitivity of an Ocean General Circulation
525                      Model to Bottom Topography},
526      journal =      jpo,
527      year =         2007,
528      volume =       37,
529      doi =          {10.1175/JPO3017.1},
530      number =       2,
531      pages =        {377--393},
532      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
533    }
534    
535    
536  @Article{maro-wun:93,  @Article{maro-wun:93,
537   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
538   year           = 1993,   year           = 1993,
# Line 465  Line 543 
543   volume         = {98, C11},   volume         = {98, C11},
544   pages          = {20,149--20,167},   pages          = {20,149--20,167},
545                    }                    }
546    
547  @Article{maro-eta:99,  @Article{maro-eta:99,
548   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
549                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
550   year           = 1999,   year           = 1999,
551   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 477  Line 555 
555   volume         = {104, C12},   volume         = {104, C12},
556   pages          = {29,529--29,547},   pages          = {29,529--29,547},
557                    }                    }
558    
559  @Article{mars-eta:97a,  @Article{mars-eta:97a,
560   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
561                    A. Adcroft},                    A. Adcroft},
# Line 488  Line 566 
566   volume         = {102, C3},   volume         = {102, C3},
567   pages          = {5,733--5,752},   pages          = {5,733--5,752},
568                    }                    }
569    
570  @Article{mars-eta:97b,  @Article{mars-eta:97b,
571   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
572                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
573   year           = {1997b},   year           = {1997b},
574   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 499  Line 577 
577   volume         = {102, C3},   volume         = {102, C3},
578   pages          = {5,753--5,766},   pages          = {5,753--5,766},
579                    }                    }
580    
581  @Article{mars-sha:98,  @Article{mars-eta:98,
582   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
583   year           = 1998,   year           = 1998,
584   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 508  Line 586 
586   journal        = jms,   journal        = jms,
587   volume         = {18},   volume         = {18},
588   pages          = {115--134},   pages          = {115--134},
589     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
590     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
591                    }                    }
592    
593  @Article{mcw:96,  @Article{mol:09,
594   author         = {J. McWilliams},   author         = {Andrea Molod},
595   year           = 1996,   year           = 2009,
596   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
597   journal        = arfm,                     algorithm and tests},
598   volume         = {28},   journal        = tel,
599   pages          = {215--248},   volume         = {61A},
600     pages          = {381--393},
601                    }                    }
602    
603  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
604  %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.  %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
605  %% (Available from Unidata or in PostScript form by anonymous FTP from  %% (Available from Unidata or in PostScript form by anonymous FTP from
606  %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also  %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
607  %%   a hypertext version of the User's Guide available at  %%   a hypertext version of the User's Guide available at
608  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
609  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
610  %%   also available.  %%   also available.
611    
612    @incollection{naum-etal:06,
613            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
614            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
615            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
616            Pages = {~},
617            Publisher = {TU Delft},
618            Title = {Adjoint code by source transformation with OpenAD/F},
619            Year = {2006}}
620    
621    @Article{orl:76,
622     author         = {I. Orlanski},
623     year           = 1976,
624     title          = {A simple boundary condition for unbounded hyperbolic flows},
625     journal        = jcp,
626     volume         = {21},
627     pages          = {251--269},
628                    }
629    
630    @Article{pal-rom:97,
631     author         = {T. Paluszkiewicz and R.D. Romea},
632     year           = 1997,
633     title          = {A one-dimensional model for the parameterization
634                      of deep convection in the ocean},
635     journal        = dao,
636     volume         = {26},
637     pages          = {95--130},
638                      }
639    
640  @TechReport{rew:97,  @TechReport{rew:97,
641    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
642    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
643                    An Interface for Data Access, Version 3},                    An Interface for Data Access, Version 3},
644    institution =  {Unidata Program Center},    institution =  {Unidata Program Center},
645    type =         {Report},    type =         {Report},
# Line 549  Line 658 
658   volume         = {19},   volume         = {19},
659   pages          = {1586--1605},   pages          = {1586--1605},
660                    }                    }
661    
662  @Article{ros-eta:93,  @Article{ros-eta:93,
663   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
664   year           = 1993,   year           = 1993,
# Line 558  Line 667 
667   volume         = {45A},   volume         = {45A},
668   pages          = {558--568},   pages          = {558--568},
669                    }                    }
670    
671  @incollection{she-and:89,  @incollection{she-and:89,
672   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
673   year           = 1989,   year           = 1989,
674   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
675                    technique},                    technique},
676   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
677                    Combining data and dynamics},                    Combining data and dynamics},
# Line 574  Line 683 
683   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
684                    }                    }
685    
686    @article{utke-etal:08,
687            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
688            Date-Modified = {2007-11-19 10:15:08 -0500},
689            Journal = {{ACM} Transactions on Mathematical Software},
690            Pages = {~},
691            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
692            Volume = {34(4)},
693            Year = {2008}}
694    
695  @Article{DaSilva94,  @Article{DaSilva94,
696   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
697   year           = 1994,   year           = 1994,
# Line 583  Line 701 
701   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
702   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
703   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
704     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
705                    }                    }
706    
707  @techreport{sta-eta:97,  @techreport{stam-etal:97,
708   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
709                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
710                    C. Hill},                    C. Hill},
711   year           = 1997,   year           = 1997,
712   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
713                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
714                    model},                    model},
715   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 600  Line 719 
719   pages          = {40 pp.},   pages          = {40 pp.},
720   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
721                    }                    }
722    
723  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
724   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
725                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
726                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
727   year           = 2001,    year = {2002a},
728   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
729                    estimated from ocean observations and a general    pages = {3118},
730                    circulation model},    doi   = {10.1029/2001JC000888},
731   journal        = jgr,  }
732   note           = {in press},  
                   }  
733    
734  @Article{Stommel66,  @Article{Stommel66,
735   author         = {H. Stommel},   author         = {H. Stommel},
# Line 625  Line 743 
743  @Article{tal-cou:87,  @Article{tal-cou:87,
744   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
745   year           = 1987,   year           = 1987,
746   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
747                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
748                    I: Theory},                    I: Theory},
749   journal        = qjrms,   journal        = qjrms,
750   volume         = {113},   volume         = {113},
751   pages          = {1311--1328},   pages          = {1311--1328},
752                    }                    }
753    
754  @Article{tal:97,  @Article{tal:97,
755   author         = {O. Talagrand},   author         = {O. Talagrand},
756   year           = 1997,   year           = 1997,
# Line 641  Line 759 
759   volume         = {75},   volume         = {75},
760   pages          = {191--209},   pages          = {191--209},
761                    }                    }
762    
763  @book{tar:87,  @book{tar:87,
764   author         = {A. Tarantola},   author         = {A. Tarantola},
765   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
766                    and model parameter estimation},                    and model parameter estimation},
767   year           = 1987,   year           = 1987,
768   publisher      = {Elsevier},   publisher      = {Elsevier},
769   address        = {Amsterdam},   address        = {Amsterdam},
770   pages          = {629 pp.},   pages          = {629 pp.},
771                    }                    }
772                                                                      
773  @techreport{tha:87,  @techreport{tha:87,
774   author         = {W.C. Thacker},   author         = {W.C. Thacker},
775   year           = 1987,   year           = 1987,
# Line 663  Line 781 
781   pages          = {64 pp.},   pages          = {64 pp.},
782   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
783                    }                    }
784    
785  @Article{tha-lon:88,  @Article{tha-lon:88,
786   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
787   year           = 1988,   year           = 1988,
# Line 672  Line 790 
790   volume         = {93, C2},   volume         = {93, C2},
791   pages          = {1,227--1,240},   pages          = {1,227--1,240},
792                    }                    }
793    
794  @Article{tha:88,  @Article{tha:88,
795   author         = {W.C. Thacker},   author         = {W.C. Thacker},
796   year           = 1988,   year           = 1988,
# Line 682  Line 800 
800   volume         = {93},   volume         = {93},
801   pages          = {10,655--10,665},   pages          = {10,655--10,665},
802                    }                    }
803    
804  @Article{tha:89,  @Article{tha:89,
805   author         = {W.C. Thacker},   author         = {W.C. Thacker},
806   year           = 1989,   year           = 1989,
# Line 692  Line 810 
810   volume         = {94, C5},   volume         = {94, C5},
811   pages          = {6,177--6,196},   pages          = {6,177--6,196},
812                    }                    }
813    
814  @Article{tha-rag:94,  @Article{tha-rag:94,
815   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
816   year           = 1994,   year           = 1994,
# Line 702  Line 820 
820   volume         = {99, C5},   volume         = {99, C5},
821   pages          = {10,131--10,141},   pages          = {10,131--10,141},
822                    }                    }
823    
824  @Article{tzi-tha:89,  @Article{tzi-tha:89,
825   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
826   year           = {1989},   year           = {1989},
# Line 712  Line 830 
830   volume         = {19},   volume         = {19},
831   pages          = {1471--1485},   pages          = {1471--1485},
832                    }                    }
833    
834  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
835   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
836                    S. Hwang},                    S. Hwang},
# Line 723  Line 841 
841   volume         = {22},   volume         = {22},
842   pages          = {1434--1457},   pages          = {1434--1457},
843                    }                    }
844    
845  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
846   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
847                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 734  Line 852 
852   volume         = {22},   volume         = {22},
853   pages          = {1458--1485},   pages          = {1458--1485},
854                    }                    }
855    
856  @book{wun:96,  @book{wun:96,
857   author         = {C. Wunsch},   author         = {C. Wunsch},
858   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
859   year           = 1996,   year           = 1996,
860   publisher      = cup,   publisher      = cup,
861   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
862   pages          = {442 pp.},   pages          = {442 pp.},
863                    }                    }
864                                                                      
865  @Article{zha-mar:99,  @Article{zha-mar:99,
866   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
867   year           = 1999,   year           = 1999,
# Line 777  Line 895 
895    year =         1997,    year =         1997,
896    volume =       102,    volume =       102,
897    number =       {C3},    number =       {C3},
898    pages =        {5733-5752}    pages =        {5733-5752},
899      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
900  }  }
901    
902  @Article{marshall:97b,  @Article{marshall:97b,
# Line 788  Line 907 
907    year =         1997,    year =         1997,
908    volume =       102,    volume =       102,
909    number =       {C3},    number =       {C3},
910    pages =        {5753-5766}    pages =        {5753-5766},
911      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
912  }  }
913    
914  @Article{adcroft:97,  @Article{adcroft:97,
# Line 798  Line 918 
918    journal =      mwr,    journal =      mwr,
919    year =         1997,    year =         1997,
920    volume =       125,    volume =       125,
921    pages =        {2293-2315}    pages =        {2293-2315},
922      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
923      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
924  }  }
925    
926  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 808  Line 930 
930    journal =      om,    journal =      om,
931    year =         2004,    year =         2004,
932    volume =       7,    volume =       7,
933    pages =        {269-284}    pages =        {269-284},
934      doi   =        {10.1016/j.ocemod.2003.09.003},
935  }  }
936    
937  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 818  Line 941 
941    journal =      mwr,    journal =      mwr,
942    year =         2004,    year =         2004,
943    volume =       132,    volume =       132,
944    pages =        {2845-2863}    pages =        {2845-2863},
945      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
946      doi     =      {10.1175/MWR2823.1},
947    }
948    
949    @inproceedings{adcroft:04c,
950      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
951                      and P. Heimbach},
952      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
953      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
954                     Recent developments in numerical methods for atmosphere and
955                     ocean modelling},
956      year =         2004,
957      pages =        {139-149},
958      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
959     publisher =     ecmwf
960  }  }
961    
962  @Article{marshall:04,  @Article{marshall:04,
# Line 827  Line 965 
965    journal =      mwr,    journal =      mwr,
966    year =         2004,    year =         2004,
967    volume =       132,    volume =       132,
968    pages =        {2882-2894}    pages =        {2882-2894},
969      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
970      doi    =       {10.1175/MWR2835.1},
971  }  }
972    
973  @Article{visbeck:97,  @Article{visbeck:97,
974    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
975    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
                   coarse-resolution ocean circulation models},  
976    journal =      jpo,    journal =      jpo,
977    year =         1997,    year =         1997,
978    volume =       27,    volume =       27,
# Line 854  Line 993 
993    pages =        {1-51}    pages =        {1-51}
994  }  }
995    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
996  @Article{mjn:99,  @Article{mjn:99,
997    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
998    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 890  Line 1020 
1020    journal =      mwr,    journal =      mwr,
1021    year =         1999,    year =         1999,
1022    volume =       127,    volume =       127,
1023    pages =        {1928-1936}    pages =        {1928-1936},
1024      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1025      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1026  }  }
1027    
1028  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 980  Line 1112 
1112    
1113  @Article{griffies:00,  @Article{griffies:00,
1114    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1115    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1116                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1117    journal =      mwr,    journal =      mwr,
1118    year =         2000,    year =         2000,
# Line 1009  Line 1141 
1141    pages =        {221-244}    pages =        {221-244}
1142  }  }
1143    
1144    @Article{Cox87,
1145      author =       {M. D. Cox},
1146      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1147      journal =      {Ocean modelling},
1148      year =         1987,
1149      volume =       74,
1150      pages =        {1-5 (Unpublished manuscript)}
1151    }
1152    
1153    @Article{gretal:98,
1154      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1155      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1156      journal =      jpo,
1157      year =         1998,
1158      volume =       28,
1159      pages =        {805-830}
1160    }
1161    
1162    @ARTICLE{gr:98,
1163      author =       {S. M. Griffies},
1164      title =        {The {Gent-McWilliams} Skew Flux},
1165      journal =      jpo,
1166      year =         1998,
1167      volume =       28,
1168      pages =        {831-841}
1169    }
1170    
1171    
1172    @Article{gkw:91,
1173      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1174      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1175      journal =      climd,
1176      year =         1991,
1177      volume =       5,
1178      number =       4,
1179      pages =        {211-226},
1180      doi   =        {10.1007/BF00210006}
1181    }
1182    
1183  @Article{dm:95,  @Article{dm:95,
1184    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {G. Danabasoglu and J. C. McWilliams},
1185    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1186    journal =      jclim,    journal =      jclim,
1187    year =         1995,    year =         1995,
# Line 1019  Line 1190 
1190    pages =        {2967-2987}    pages =        {2967-2987}
1191  }  }
1192    
 @Article{ldd:97,  
   author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},  
   title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},  
   journal =      jpo,  
   year =         1997,  
   volume =       27,  
   number =       11,  
   pages =        {2418-2447}  
 }  
   
1193  @Article{gkw:99,  @Article{gkw:99,
1194    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1195    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
                   coarse-resolution numerical models},  
1196    journal =      jpo,    journal =      jpo,
1197    year =         1999,    year =         1999,
1198    volume =       29,    volume =       29,
# Line 1064  Line 1224 
1224  }  }
1225    
1226  @Article{molteni:03,  @Article{molteni:03,
1227    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1228    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1229                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1230                    multidecadal experiments},                    multidecadal experiments},
1231    journal =      climd,    journal =      climd,
1232    year =         2003,    year =         2003,
# Line 1136  Line 1296 
1296  }  }
1297    
1298  @ARTICLE{zha98a,  @ARTICLE{zha98a,
1299    AUTHOR      = "J. Zhang and W. D. {Hibler, III} and M. Steele    AUTHOR      = "J. Zhang and Hibler, III, W. D. and M. Steele
1300                   and D. A. Rothrock",                   and D. A. Rothrock",
1301    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",    TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1302    JOURNAL     = jpo,    JOURNAL     = jpo,
# Line 1164  Line 1324 
1324    PAGES       = "525-531"    PAGES       = "525-531"
1325  }  }
1326    
1327  @ARTICLE{hib79,  @ARTICLE{hib79,
1328    AUTHOR      = "W. D. {Hibler, III}",    author =       {Hibler, III, W. D.},
1329    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1330    JOURNAL     = jpo,    JOURNAL     = jpo,
1331    YEAR        = 1979,    YEAR        = 1979,
# Line 1174  Line 1334 
1334  }  }
1335    
1336  @ARTICLE{fla92,  @ARTICLE{fla92,
1337    AUTHOR      = "G. M. Flato and W. D. {Hibler, III}",    AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1338    TITLE       = "Modeling pack ice as a cavitating fluid",    TITLE       = "Modeling pack ice as a cavitating fluid",
1339    JOURNAL     = jpo,    JOURNAL     = jpo,
1340    YEAR        = 1992,    YEAR        = 1992,
# Line 1188  Line 1348 
1348    JOURNAL     = jpo,    JOURNAL     = jpo,
1349    YEAR        = 1997,    YEAR        = 1997,
1350    VOLUME      = 27,    VOLUME      = 27,
1351    PAGES       = "1849-1867"    PAGES       = "1849--1867"
1352    }
1353    
1354    @Article{hun01,
1355      author =       {Elizabeth C. Hunke},
1356      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1357                      Model: Linearization Issues},
1358      journal =      jcp,
1359      year =         2001,
1360      volume =       170,
1361      pages =        {18--38},
1362      doi =          {10.1006/jcph.2001.6710}
1363  }  }
1364    
1365  @ARTICLE{zha00,  @ARTICLE{zha00,
# Line 1197  Line 1368 
1368    JOURNAL     = jgr,    JOURNAL     = jgr,
1369    YEAR        = 2000,    YEAR        = 2000,
1370    VOLUME      = 105,    VOLUME      = 105,
1371    PAGES       = "3325-3338"    PAGES       = "3325--3338"
1372  }  }
1373    
1374  @Article{Shapiro_70,  @Article{Shapiro_70,
# Line 1212  Line 1383 
1383    
1384  @TechReport{Dutkiewicz_etal_05,  @TechReport{Dutkiewicz_etal_05,
1385    author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},    author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1386    title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and    title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1387                    its Coupling to a Two-Dimensional Atmospheric Model: Uses                    its Coupling to a Two-Dimensional Atmospheric Model: Uses
1388                    in Climate Change Studies, Report 122},                    in Climate Change Studies, Report 122},
1389    institution =  {MIT Joint Program of the Science and Policy of Global Change},    institution =  {MIT Joint Program of the Science and Policy of Global Change},
1390    year =         {2005},    year =         {2005},
# Line 1236  Line 1407 
1407    
1408  @Article{McKinley_etal_04,  @Article{McKinley_etal_04,
1409    author =       {G. McKinley and M. J. Follows and J. C. Marshall},    author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1410    title =        {Mechanisms of air-sea CO$_2$ flux variability in the    title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1411                    Equatorial Pacific and the North Atlantic},                    Equatorial Pacific and the North Atlantic},
1412    journal =      {Global Biogeochemical Cycles},    journal =      {Global Biogeochemical Cycles},
1413    year =         {2004},    year =         {2004},
# Line 1278  Line 1449 
1449   editor       = {Pfafflin and Zeigler},   editor       = {Pfafflin and Zeigler},
1450   publisher    = {Gordon and Breach, Scientific Publishers}   publisher    = {Gordon and Breach, Scientific Publishers}
1451  }  }
1452    
1453  @Article{chou:92,  @Article{chou:92,
1454   author       = {M-D. Chou},   author       = {M-D. Chou},
1455   year         = {1992},   year         = {1992},
1456   title        = {A solar radiation model for use in climate studies.},   title        = {A solar radiation model for use in climate studies.},
1457   journal      = jas,   journal      = jas,
1458   volume       = {49},   volume       = {49},
1459   pages        = {762-772}   pages        = {762-772}
1460  }  }
# Line 1303  Line 1474 
1474   year         = {1994},   year         = {1994},
1475   title        = {An efficient thermal infrared radiation parameterization   title        = {An efficient thermal infrared radiation parameterization
1476  for use in general circulation models},  for use in general circulation models},
1477   institution  = {National Aeronautics and Space Administration},   institution  = {National Aeronautics and Space Administration},
1478   type         = {NASA Technical Memorandum},   type         = {NASA Technical Memorandum},
1479   number       = {104606-Vol 3},   number       = {104606-Vol 3},
1480   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1481   note         = {http://www.gmao.nasa.gov/}   note         = {http://www.gmao.nasa.gov/}
1482  }  }
# Line 1314  for use in general circulation models}, Line 1485  for use in general circulation models},
1485   author       = {R. H. Clarke},   author       = {R. H. Clarke},
1486   year         = {1970},   year         = {1970},
1487   title        = {Observational studies in the atmospheric boundary layer.},   title        = {Observational studies in the atmospheric boundary layer.},
1488   journal      = qjrms,   journal      = qjrms,
1489   volume       = {96},   volume       = {96},
1490   pages        = {91-114}   pages        = {91-114}
1491  }  }
# Line 1325  for use in general circulation models}, Line 1496  for use in general circulation models},
1496   title        = {NDVI-derived Land Cover Classification at Global Scales. },   title        = {NDVI-derived Land Cover Classification at Global Scales. },
1497   journal      = {Int'l J. Rem. Sens.} ,   journal      = {Int'l J. Rem. Sens.} ,
1498   volume       = {15},   volume       = {15},
1499   pages        = {3567-3586}   pages        = {3567-3586}
1500  }  }
1501    
1502  @Article{dorsell:89,  @Article{dorsell:89,
1503   author       = { J. L. Dorman and P. J. Sellers},   author       = { J. L. Dorman and P. J. Sellers},
1504   year         = {1989},   year         = {1989},
1505   title        = {A global climatology of albedo, roughness length and stomatal   title        = {A global climatology of albedo, roughness length and stomatal
1506  resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},  resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1507   journal      = jam,   journal      = jam,
1508   volume       = {28},   volume       = {28},
1509   pages        = {833-855}   pages        = {833-855}
1510  }  }
# Line 1343  resistance for atmospheric general circu Line 1514  resistance for atmospheric general circu
1514   year         = {1988},   year         = {1988},
1515   title        = { Design of a non-singular level 2.5 second-order closure   title        = { Design of a non-singular level 2.5 second-order closure
1516  model for the prediction of atmospheric turbulence. },  model for the prediction of atmospheric turbulence. },
1517   journal      = jas,   journal      = jas,
1518   volume       = {45},   volume       = {45},
1519   pages        = {113-132}   pages        = {113-132}
1520  }  }
# Line 1373  Continental Moisture Budget of the Unite Line 1544  Continental Moisture Budget of the Unite
1544   author       = {J. Kondo},   author       = {J. Kondo},
1545   year         = {1975},   year         = {1975},
1546   title        = {Air-sea bulk transfer coefficients in diabatic conditions.},   title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
1547   journal      = blm,   journal      = blm,
1548   volume       = {9},   volume       = {9},
1549   pages        = {91-112}   pages        = {91-112}
1550  }  }
# Line 1382  Continental Moisture Budget of the Unite Line 1553  Continental Moisture Budget of the Unite
1553   author       = { Randal D. Koster and Max J. Suarez},   author       = { Randal D. Koster and Max J. Suarez},
1554   year         = {1991},   year         = {1991},
1555   title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},   title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1556   institution  = {National Aeronautics and Space Administration},   institution  = {National Aeronautics and Space Administration},
1557   type         = {NASA Technical Memorandum},   type         = {NASA Technical Memorandum},
1558   number       = {104538},   number       = {104538},
1559   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1560   note         = {http://www.gmao.nasa.gov/},   note         = {http://www.gmao.nasa.gov/},
1561  }  }
# Line 1404  in Climate Models as a Composite of Inde Line 1575  in Climate Models as a Composite of Inde
1575   year         = {1974},   year         = {1974},
1576   title        = { A parameterization for the absorption of solar radiation   title        = { A parameterization for the absorption of solar radiation
1577  in the Earth's atmosphere.  },  in the Earth's atmosphere.  },
1578   journal      = jas,   journal      = jas,
1579   volume       = {31},   volume       = {31},
1580   pages        = {118-133}   pages        = {118-133}
1581  }  }
# Line 1413  in the Earth's atmosphere.  }, Line 1584  in the Earth's atmosphere.  },
1584   author       = {W. G. Large and S. Pond},   author       = {W. G. Large and S. Pond},
1585   year         = {1981},   year         = {1981},
1586   title        = {Open ocean momentum flux measurements in moderate to strong winds.},   title        = {Open ocean momentum flux measurements in moderate to strong winds.},
1587   journal      = jpo,   journal      = jpo,
1588   volume       = {11},   volume       = {11},
1589   pages        = {324-336}   pages        = {324-336}
1590  }  }
# Line 1423  in the Earth's atmosphere.  }, Line 1594  in the Earth's atmosphere.  },
1594   year         = {1992},   year         = {1992},
1595   title        = {  Relaxed Arakawa Schubert: A parameterization of moist   title        = {  Relaxed Arakawa Schubert: A parameterization of moist
1596  convection for general circulation models.},  convection for general circulation models.},
1597   journal      = mwr,   journal      = mwr,
1598   volume       = {120},   volume       = {120},
1599   pages        = {978-1002}   pages        = {978-1002}
1600  }  }
# Line 1441  convection for general circulation model Line 1612  convection for general circulation model
1612   author       = {R. W. Reynolds and T. M. Smith},   author       = {R. W. Reynolds and T. M. Smith},
1613   year         = {1994},   year         = {1994},
1614   title        = {Improved global sea surface temperature analyses using optimum interpolation.},   title        = {Improved global sea surface temperature analyses using optimum interpolation.},
1615   journal      = jclim,   journal      = jclim,
1616   volume       = {7},   volume       = {7},
1617   pages        = {929-948}   pages        = {929-948}
1618  }  }
# Line 1451  convection for general circulation model Line 1622  convection for general circulation model
1622   year         = {1987},   year         = {1987},
1623   title        = {  A computation of the stratospheric   title        = {  A computation of the stratospheric
1624  diabatic circulation using an accurate radiative transfer model},  diabatic circulation using an accurate radiative transfer model},
1625   journal      = jas,   journal      = jas,
1626   volume       = {44},   volume       = {44},
1627   pages        = {859-876}   pages        = {859-876}
1628  }  }
# Line 1461  diabatic circulation using an accurate r Line 1632  diabatic circulation using an accurate r
1632   year         = {1988},   year         = {1988},
1633   title        = {  The roles of dry convection, cloud-radiation feedback processes   title        = {  The roles of dry convection, cloud-radiation feedback processes
1634  and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },  and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1635   journal      = mwr,   journal      = mwr,
1636   volume       = {116},   volume       = {116},
1637   pages        = {2366-2387}   pages        = {2366-2387}
1638  }  }
# Line 1471  and the influence of recent improvements Line 1642  and the influence of recent improvements
1642   year         = {1996},   year         = {1996},
1643   title        = {  Dynamical aspects of climate simulations Using the GEOS   title        = {  Dynamical aspects of climate simulations Using the GEOS
1644  General Circulation Model},  General Circulation Model},
1645   institution  = {National Aeronautics and Space Administration},   institution  = {National Aeronautics and Space Administration},
1646   type         = {NASA Technical Memorandum},   type         = {NASA Technical Memorandum},
1647   number       = {104606 Volume 10},   number       = {104606 Volume 10},
1648   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1649   note         = {http://www.gmao.nasa.gov/},   note         = {http://www.gmao.nasa.gov/},
1650  }  }
# Line 1483  General Circulation Model}, Line 1654  General Circulation Model},
1654   year         = {1974},   year         = {1974},
1655   title        = {Heat and mass transfer between a rough wall and   title        = {Heat and mass transfer between a rough wall and
1656  turbulent fluid flow at high Reynolds and Peclet numbers.  },  turbulent fluid flow at high Reynolds and Peclet numbers.  },
1657   journal      = jfm,   journal      = jfm,
1658   volume       = {62},   volume       = {62},
1659   pages        = {601-623}   pages        = {601-623}
1660  }  }
# Line 1493  turbulent fluid flow at high Reynolds an Line 1664  turbulent fluid flow at high Reynolds an
1664   year         = {1977},   year         = {1977},
1665   title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious   title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1666  atmospheric boundary layer.},  atmospheric boundary layer.},
1667   journal      = {Atmos. Environ.},   journal      = {Atmos. Environ.},
1668   volume       = {11},   volume       = {11},
1669   pages        = {1015-1024}   pages        = {1015-1024}
1670  }  }
# Line 1502  atmospheric boundary layer.}, Line 1673  atmospheric boundary layer.},
1673   author       = {J. Zhou and Y.C. Sud and K.-M. Lau},   author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1674   year         = {1995},   year         = {1995},
1675   title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},   title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1676   journal      = qjrms,   journal      = qjrms,
1677   volume       = {122},   volume       = {122},
1678   pages        = {903-927}   pages        = {903-927}
1679  }  }
1680    
1681  @Article{breth:99,  @Article{breth:99,
1682   author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond   author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1683                     and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov                     and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1684                     and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and                     and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1685                     B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},                     B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1686   year           = 1999,   year           = 1999,
1687   title          = {An intercomparison of radiatively driven entrainment and turbulence   title          = {An intercomparison of radiatively driven entrainment and turbulence
1688                    in a smoke cloud, as simulated by different numerical models.},                    in a smoke cloud, as simulated by different numerical models.},
1689   journal        = qjrms,   journal        = qjrms,
1690   volume         = {125},   volume         = {125},
1691   pages          = {391-423}   pages          = {391-423}
1692                    }                    }
1693    
1694  @Article{bm:99,  @Article{bm:99,
1695   author         = {A. C. Bushell and G.M. Martin},   author         = {A. C. Bushell and G.M. Martin},
1696   year           = 1999,   year           = 1999,
1697   title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},   title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1698   journal        = {Climate Dyn.},   journal        = {Climate Dyn.},
1699   volume         = {15},   volume         = {15},
1700   pages          = {293-318}   pages          = {293-318}
1701                    }                    }
1702    
1703  @Article{Inn:01,  @Article{Inn:01,
1704   author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},   author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1705   year           = 2001,   year           = 2001,
1706   title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;   title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1707                    Implications for the Simulation of the Madden-Julian Oscillation.},                    Implications for the Simulation of the Madden-Julian Oscillation.},
1708   journal        = {Climate Dyn.},   journal        = {Climate Dyn.},
1709   volume         = {17},   volume         = {17},
1710   pages          = {777-794}   pages          = {777-794}
1711                    }                    }
1712    
1713  @Article{kal:89,  @Article{kal:89,
1714   author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and   author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1715                     J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},                     J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1716   year           = 1989,   year           = 1989,
1717   title          = {Rules for Interchange of Physical Parameterizations.},   title          = {Rules for Interchange of Physical Parameterizations.},
1718   journal        = bams,   journal        = bams,
1719   volume         = {70},   volume         = {70},
1720   pages          = {620-622}   pages          = {620-622}
1721                    }                    }
1722    
1723  @Article{wo:98,  @Article{wo:98,
1724   author         = {D. Williamson and J.G. Olsen},   author         = {D. Williamson and J.G. Olsen},
1725   year           = 1998,   year           = 1998,
1726   title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},   title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1727   journal        = mwr,   journal        = mwr,
1728   volume         = {126},   volume         = {126},
1729   pages          = {991-1000}   pages          = {991-1000}
1730                    }                    }
1731    
1732    @TechReport{MPI-std-20,
1733      author =       {{Message Passing Interface Forum}},
1734      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1735      institution =  {mpi-forum.org},
1736      year =         {1998},
1737    }
1738    
1739    @Article{cam08,
1740      author =       {Jean-Michel Campin and John Marshall and David
1741                      Ferreira},
1742      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1743                      Coordinate z$^\ast$},
1744      journal =      om,
1745      volume =       24,
1746      number =       {1--2},
1747      pages =        {1--14},
1748      doi =          {10.1016/j.ocemod.2008.05.005},
1749      year =         2008
1750    }
1751    
1752    @Article{geiger98,
1753      author =       {Cathleen A. Geiger and Hibler, III, William D. and
1754                      Stephen F. Ackley},
1755      title =        {Large-Scale Sea Ice Drift and Deformation:
1756                      {C}omparison between Models and Observations in the
1757                      Western {W}eddell {S}ea during 1992},
1758      journal =      jgr,
1759      year =         1998,
1760      volume =       103,
1761      number =       {C10},
1762      pages =        {21893--21913}
1763    }
1764    
1765    @InCollection{hibler84,
1766      author =       {Hibler, III, William D.},
1767      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1768                      increases},
1769      booktitle =    {Climate processes and climate sensitivity},
1770      pages =        {238--253},
1771      publisher =    {AGU},
1772      year =         1984,
1773      editor =       {J. E. Hansen and T. Takahashi},
1774      volume =       29,
1775      series =       {Geophysical Monograph},
1776      address =      {Washington, D.C.}
1777    }
1778    
1779    @Article{hibler87,
1780      author =       {Hibler, III, William D. and Kirk Bryan},
1781      title =        {A Diagnostic Ice-Ocean Model},
1782      journal =      jpo,
1783      year =         1987,
1784      volume =       17,
1785      number =       7,
1786      pages =        {987--1015}
1787    }
1788    
1789    @InCollection{hibler95,
1790      author =       {Hibler, III, William D. and Chi F. Ip},
1791      title =        {The effect of sea ice rheology on {A}rcitc buoy
1792                      drift},
1793      booktitle =    {Ice Mechanics},
1794      pages =        {255--264},
1795      publisher =    {Am. Soc. of Mech. Eng.},
1796      year =         1995,
1797      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1798      volume =       204,
1799      series =       {AMD},
1800      address =      {New York}
1801    }
1802    
1803    @Article{hibler97,
1804      author =       {Hibler, III, William D. and Erland M. Schulson},
1805      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1806                      Investigations of Climate},
1807      journal =      angl,
1808      year =         1997,
1809      volume =       25,
1810      pages =        {26--32}
1811    }
1812    
1813    @Article{hundsdorfer94,
1814      author =       {Willem Hundsdorfer and R. A. Trompert},
1815      title =        {Method of Lines and Direct Discretization: a
1816                      Comparison for Linear Advection},
1817      journal =      {Applied Numerical Mathematics},
1818      year =         1994,
1819      volume =       13,
1820      number =       6,
1821      pages =        {469--490},
1822      doi =          {10.1016/0168-9274(94)90009-4}
1823    }
1824    
1825    @Article{leppaeranta83,
1826      author =       {Matti Lepp{\"a}ranta},
1827      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1828                      Thickness in Subarctic Basins},
1829      journal =      {Nordic Hydrology},
1830      year =         1983,
1831      volume =       14,
1832      pages =        {59--70}
1833    }
1834    
1835    @Article{manabe79,
1836      author =       {S. Manabe and Kirk Bryan and M. J. Spelman},
1837      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1838                      Variation for Future Studies of Climate Sensitivity},
1839      journal =      dao,
1840      year =         1979,
1841      volume =       3,
1842      number =       {393--426}
1843    }
1844    
1845    @ARTICLE{menemenlis05,
1846      author =       {D. Menemenlis and C. Hill and A. Adcroft and
1847                      J.-M. Campin and B. Cheng and B. Ciotti and
1848                      I. Fukumori and A. Koehl and P. Heimbach and
1849                      C. Henze and T. Lee and D. Stammer and J. Taft and
1850                      J. Zhang},
1851      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1852                      Climate Research},
1853      journal =      eos,
1854      year =         2005,
1855      volume =       86,
1856      number =       9,
1857      pages =        {89, 95--96}
1858    }
1859    
1860    @Article{parkinson79,
1861      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1862      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1863      journal =      jgr,
1864      year =         1979,
1865      month =        jan,
1866      volume =       84,
1867      number =       {C1},
1868      pages =        {311--337},
1869      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1870      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1871                      System}
1872    }
1873    
1874    @Article{semtner84,
1875      author =       {Semtner, Jr., Albert J.},
1876      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1877                      Ice in Studies of Climatic Change},
1878      journal =      cch,
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