--- manual/manual_references.bib	2004/08/30 21:45:44	1.15
+++ manual/manual_references.bib	2005/08/01 23:46:25	1.20
@@ -306,6 +306,15 @@
   pages =        {241--248}
 }
  
+@Article{held-suar:94,
+ author		= {I.M. Held and M.J. Suarez},
+ year		= {1994},
+ title		= {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
+ journal	= {Bulletin of the American Meteorological Society},
+ volume         = {75(10)},
+ pages          = {1825-1830}
+}
+ 
 @Article{hil-eta:01,
  author		= {C. Hill and M. Follows and V. Bugnion and 
                   J. Marshall},
@@ -790,13 +799,33 @@
   pages =	 {2293-2315}
 }
 
-@Article{adcroft:04,
-  author = 	 {Adcroft, A.J. and J.-M. Campin},
+@Article{adcroft:04a,
+  author = 	 {Adcroft, A. and J.-M. Campin},
   title = 	 {Re-scaled height coordinates for accurate representation
                   of free-surface flows in ocean circulation models},
   journal = 	 om,
   year = 	 2004,
-  note =	 {in press}
+  volume =	 7,
+  pages =	 {269-284}
+}
+
+@Article{adcroft:04b,
+  author = 	 {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
+  title = 	 {Implementation of an Atmosphere-Ocean General Circulation Model
+                  on the Expanded Spherical Cube},
+  journal = 	 mwr,
+  year = 	 2004,
+  volume =	 132,
+  pages =	 {2845-2863}
+}
+
+@Article{marshall:04,
+  author = 	 {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
+  title = 	 {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
+  journal = 	 mwr,
+  year = 	 2004,
+  volume =	 132,
+  pages =	 {2882-2894}
 }
 
 @Article{visbeck:97,
@@ -990,13 +1019,17 @@
   pages =	 {1682-1700}
 }
 
-@Article{roe:85,
-  author = 	 {Roe, P.L.},
-  title = 	 {Some contributions to the modeling of discontinuous flows},
-  journal = 	 {Lect. Notes Appl. Math.},
-  year = 	 1985,
-  volume =	 22,
-  pages =	 {163-193}
+@incollection{roe:85,
+ author         = {P.L. Roe},
+ year           = 1985,
+ title          = {Some contributions to the modelling of discontinuous flows},
+ booktitle      = {Large-Scale Computations in Fluid Mechanics},
+ series         = {Lectures in Applied Mathematics},
+ volume         = 22,
+ pages          = {163-193},
+ editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
+ publisher      = {American Mathematical Society},
+ address        = {Providence, RI},
 }
 
 @Article{trenberth90,
@@ -1146,3 +1179,74 @@
   VOLUME      = 105,
   PAGES       = "3325-3338"
 }
+
+@Article{Shapiro_70,
+  author = 	 {Shapiro, R.},
+  title = 	 {Smoothing, filtering, and boundary effects},
+  journal = 	 {Reviews of Geophysics and Space Physics},
+  year = 	 {1970},
+  volume = 	 {8},
+  number = 	 {2},
+  pages = 	 {359--387},
+}
+
+@TechReport{Dutkiewicz_etal_05,
+  author = 	 {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
+  title = 	 {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and 
+                  its Coupling to a Two-Dimensional Atmospheric Model: Uses 
+                  in Climate Change Studies, Report 122},
+  institution =  {MIT Joint Program of the Science and Policy of Global Change},
+  year = 	 {2005},
+  OPTnumber = 	 {122},
+  address = 	 {Cambridge, MA},
+  note = 	 {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
+}
+
+@Article{Follows_etal_05,
+  author = 	 {M. Follows and T. Ito and S. Dutkiewicz},
+  title = 	 {A Compact and Accurate Carbonate Chemistry Solver for Ocean
+                  Biogeochemistry Models},
+  journal = 	 {Ocean Modeling},
+  year = 	 {{in press}},
+  OPTkey = 	 {},
+  OPTvolume = 	 {},
+  OPTnumber = 	 {},
+  OPTpages = 	 {},
+}
+
+@Article{McKinley_etal_04,
+  author = 	 {G. McKinley and M. J. Follows and J. C. Marshall},
+  title = 	 {Mechanisms of air-sea CO$_2$ flux variability in the 
+                  Equatorial Pacific and the North Atlantic},
+  journal = 	 {Global Biogeochemical Cycles},
+  year = 	 {},
+  OPTkey = 	 {},
+  volume = 	 {18},
+  number = 	 {doi:10.1029/2003GB002179},
+  OPTpages = 	 {},
+}
+
+@TechReport{Trenberth_etal_89,
+  author = 	 {K. Trenberth and J. Olson and W. Large},
+  title = 	 {A global wind stress climatology based on ECMWF analyses},
+  institution =  {NCAR},
+  year = 	 {1989},
+  OPTkey = 	 {},
+  OPTtype = 	 {},
+  number = 	 {NCAR/TN-338+STR},
+  address = 	 {Boulder, CO},
+  OPTmonth = 	 {},
+}
+
+@Article{Wanninkhof_92,
+  author = 	 {R. Wanninkhof},
+  title = 	 {Relationship between wind speed and gas exchange over the ocean},
+  journal = 	 jgr,
+  year = 	 {1992},
+  OPTkey = 	 {},
+  volume = 	 {97},
+  OPTnumber = 	 {},
+  pages = 	 {7373--7382},
+  OPTmonth = 	 {},
+}
+