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revision 1.10 by cnh, Thu Feb 28 19:32:19 2002 UTC revision 1.44 by dfer, Mon Jun 27 02:09:19 2011 UTC
# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5    @string{climd   = {Clim.~Dynamics}}
6    @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
10    @string{jam     = {J.~Appl.~Meteor.}}
11  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
12  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
13    @string{jcp     = {J.~Comput.~Phys.}}
14  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
15  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
16  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
17  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
18    @string{om      = {Ocean Modelling}}
19  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
20  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
21  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 28  Line 34 
34  @string{estec   = {European Space Research and Technology Centre  @string{estec   = {European Space Research and Technology Centre
35                          (ESTEC)}}                          (ESTEC)}}
36  @string{esa     = {European Space Agency (ESA)}}  @string{esa     = {European Space Agency (ESA)}}
37    @string{eos     = {Eos~Trans.\ AGU}}
38    
39  @Article{bis-eta:92,  @Article{bis-eta:92,
40   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 67  Line 74 
74                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
75   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
76                    }                    }
77    
78    @ARTICLE{bugi-hill:06,
79      author = {V. Bugnion and C. Hill},
80      title = {Equilibration mechanisms in an adjoint ocean general
81               circulation model},
82      journal = {Ocean Dynamics},
83      year = {2006},
84      volume = {56},
85      number = {1},
86      pages = {51-61},
87      doi   = {10.1007/s10236-005-0052-z},
88    }
89    
90  @techreport{bis-roh:97,  @techreport{bis-roh:97,
91   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 114  Line 133 
133   volume         = {120},   volume         = {120},
134   pages          = {1367--1387},   pages          = {1367--1387},
135                    }                    }
136    
137    @ARTICLE{durr:91,
138      author = {Dale R. Durran},
139      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
140               to Leapfrog Time Differencing},
141      journal = mwr,
142      year = {1991},
143      volume = {119},
144      pages  = {702-720},
145    }
146    
147    
148    @ARTICLE{dutk-etal:06,
149      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
150      title = {Controls on ocean productivity and air-sea carbon flux:
151               An adjoint model sensitivity study},
152      journal = grl,
153      year = {2006},
154      volume = {33},
155      pages  = {L02603},
156      doi    = {10.1029/2005GL024987},
157    }
158    
159  @Article{err:97,  @Article{err:97,
160   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 175  Line 216 
216   note           = {in press},   note           = {in press},
217                    }                    }
218    
219    @Article{fer-eta:05,
220     author         = {D. Ferreira and J. Marshall and P. Heimbach},
221     year           = 2005,
222     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224     journal        = jpo,
225     volume         = {35},
226     pages          = {1891--1910},
227                      }
228    
229    @Article{gas-eta:90,
230     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
231     year           = 1990,
232     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
233                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
234                       Upper Ocean Study Site},
235     journal        = jgr,
236     volume         = {95 (C9)},
237     pages          = {16,179--16,193},
238                      }
239    
240  @Article{gen-mcw:90,  @Article{gen-mcw:90,
241   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
242   year           = 1990,   year           = 1990,
243   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
244   journal        = jpo,   journal        = jpo,
# Line 185  Line 247 
247                    }                    }
248    
249  @Article{gen-eta:95,  @Article{gen-eta:95,
250   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
251   year           = 1995,   year           = 1995,
252   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
253   journal        = jpo,   journal        = jpo,
254   volume         = {25},   volume         = {25},
255   pages          = {463--474},   pages          = {463--474},
# Line 250  Line 310 
310   pages          = {401 pp.},   pages          = {401 pp.},
311                    }                    }
312                                                                        
313    @incollection{gri:89,
314     author         = {A. Griewank},
315     year           = 1989,
316     title          = {On automatic differentiation},
317     booktitle      = {Mathematical Programming: Recent Developments and
318                      Applications},
319     pages          = {83--108},
320     editor         = {M. Iri and K. Tanabe},
321     publisher      = {Kluwer},
322     address        = {Dordrecht, NL},
323                      }
324    
325    @Article{gri:92,
326      author =       {A.~Griewank},
327      title =        {Achieving logarithmic growth of temporal and spatial
328      complexity in reverse {A}utomatic {D}ifferentiation},
329      journal       = {Optimization Methods and Software},
330      year          = {1992},
331      volume        = {1},
332      pages         = {35--54}
333    }
334    
335  @book{gri:00,  @book{gri:00,
336   author         = {A. Griewank},   author         = {A. Griewank},
337   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 282  Line 364 
364    pages =        {241--248}    pages =        {241--248}
365  }  }
366    
367    @Article{held-suar:94,
368     author         = {I.M. Held and M.J. Suarez},
369     year           = {1994},
370     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
371     journal        = {Bulletin of the American Meteorological Society},
372     volume         = {75(10)},
373     pages          = {1825-1830}
374    }
375    
376  @Article{hil-eta:01,  @Article{hil-eta:01,
377   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
378                    J. Marshall},                    J. Marshall},
# Line 292  Line 383 
383   note           = {submitted},   note           = {submitted},
384                    }                    }
385    
386    @ARTICLE{hib80,
387      author =       {Hibler, III, William D.},
388      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
389      JOURNAL     = mwr,
390      YEAR        = 1980,
391      VOLUME      = 1,
392      PAGES       = "1943-1973"
393    }
394    
395  @Article{Holland75,  @Article{Holland75,
396   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
397   year           = {1975a},   year           = {1975a},
# Line 314  Line 414 
414   pages          = {658-669}   pages          = {658-669}
415                    }                    }
416    
417    @Article{jam-oze:86,
418     author         = {B.M. Jamart and J. Ozer},
419     year           = {1986},
420     title          = {Numerical boundary layers and spurious residual flows},
421     journal        = jgr,
422     volume         = {91},
423     pages          = {10,621-10,631}
424                      }
425    
426  @book{kas-eta:00,  @book{kas-eta:00,
427   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
428                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 329  Line 438 
438  @Article{lar-eta:94,  @Article{lar-eta:94,
439   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
440   year           = 1994,   year           = 1994,
441   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
442   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
443   volume         = {32},   volume         = {32},
444   pages          = {363--403},   pages          = {363--403},
# Line 410  Line 518 
518   pages          = {38 pp.},   pages          = {38 pp.},
519   address        = {Delft (NL)},   address        = {Delft (NL)},
520                    }                    }
521    
522    @ARTICLE{losc-heim:06,
523      author =       {Martin Losch and Patrick Heimbach},
524      title =        {Adjoint Sensitivity of an Ocean General Circulation
525                      Model to Bottom Topography},
526      journal =      jpo,
527      year =         2007,
528      volume =       37,
529      doi =          {10.1175/JPO3017.1},
530      number =       2,
531      pages =        {377--393},
532      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
533    }
534    
535    
536  @Article{maro-wun:93,  @Article{maro-wun:93,
537   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 456  Line 578 
578   pages          = {5,753--5,766},   pages          = {5,753--5,766},
579                    }                    }
580    
581  @Article{mars-sha:98,  @Article{mars-eta:98,
582   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
583   year           = 1998,   year           = 1998,
584   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 464  Line 586 
586   journal        = jms,   journal        = jms,
587   volume         = {18},   volume         = {18},
588   pages          = {115--134},   pages          = {115--134},
589     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
590     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
591                    }                    }
592    
593  @Article{mcw:96,  @Article{mol:09,
594   author         = {J. McWilliams},   author         = {Andrea Molod},
595   year           = 1996,   year           = 2009,
596   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
597   journal        = arfm,                     algorithm and tests},
598   volume         = {28},   journal        = tel,
599   pages          = {215--248},   volume         = {61A},
600     pages          = {381--393},
601                    }                    }
602    
603    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
604    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
605    %% (Available from Unidata or in PostScript form by anonymous FTP from
606    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
607    %%   a hypertext version of the User's Guide available at
608    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
609    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
610    %%   also available.
611      
612    @incollection{naum-etal:06,
613            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
614            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
615            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
616            Pages = {~},
617            Publisher = {TU Delft},
618            Title = {Adjoint code by source transformation with OpenAD/F},
619            Year = {2006}}
620    
621    @Article{orl:76,
622     author         = {I. Orlanski},
623     year           = 1976,
624     title          = {A simple boundary condition for unbounded hyperbolic flows},
625     journal        = jcp,
626     volume         = {21},
627     pages          = {251--269},
628                    }
629    
630    @Article{pal-rom:97,
631     author         = {T. Paluszkiewicz and R.D. Romea},
632     year           = 1997,
633     title          = {A one-dimensional model for the parameterization
634                      of deep convection in the ocean},
635     journal        = dao,
636     volume         = {26},
637     pages          = {95--130},
638                      }
639    
640    @TechReport{rew:97,
641      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
642      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
643                      An Interface for Data Access, Version 3},
644      institution =  {Unidata Program Center},
645      type =         {Report},
646      address =      {Boulder, Colorado},
647      year =         1997,
648      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
649    }
650    
651    
652  @Article{res-eta:98,  @Article{res-eta:98,
653   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
654   year           = 1998,   year           = 1998,
# Line 509  Line 683 
683   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
684                    }                    }
685    
686    @article{utke-etal:08,
687            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
688            Date-Modified = {2007-11-19 10:15:08 -0500},
689            Journal = {{ACM} Transactions on Mathematical Software},
690            Pages = {~},
691            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
692            Volume = {34(4)},
693            Year = {2008}}
694    
695  @Article{DaSilva94,  @Article{DaSilva94,
696   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
697   year           = 1994,   year           = 1994,
# Line 518  Line 701 
701   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
702   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
703   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
704     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
705                    }                    }
706    
707  @techreport{sta-eta:97,  @techreport{stam-etal:97,
708   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
709                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
710                    C. Hill},                    C. Hill},
# Line 536  Line 720 
720   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
721                    }                    }
722    
723  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
724   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
725                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
726                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
727   year           = 2001,    year = {2002a},
728   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
729                    estimated from ocean observations and a general    pages = {3118},
730                    circulation model},    doi   = {10.1029/2001JC000888},
731   journal        = jgr,  }
732   note           = {in press},  
                   }  
733    
734  @Article{Stommel66,  @Article{Stommel66,
735   author         = {H. Stommel},   author         = {H. Stommel},
# Line 708  Line 891 
891    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
892    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
893                   modeling},                   modeling},
894    journal =      {JGR},    journal =      jgr,
895    year =         1997,    year =         1997,
896    volume =       102,    volume =       102,
897    number =       {C3},    number =       {C3},
898    pages =        {5733-5752}    pages =        {5733-5752},
899      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
900  }  }
901    
902  @Article{marshall:97b,  @Article{marshall:97b,
903    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
904    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
905                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
906    journal =      {JGR},    journal =      jgr,
907    year =         1997,    year =         1997,
908    volume =       102,    volume =       102,
909    number =       {C3},    number =       {C3},
910    pages =        {5753-5766}    pages =        {5753-5766},
911      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
912  }  }
913    
914  @Article{adcroft:97,  @Article{adcroft:97,
915    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
916    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
917                    coordinate ocean model},                    coordinate ocean model},
918    journal =      {MWR},    journal =      mwr,
919    year =         1997,    year =         1997,
920    volume =       125,    volume =       125,
921    pages =        {2293-2315}    pages =        {2293-2315},
922      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
923      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
924    }
925    
926    @Article{adcroft:04a,
927      author =       {Adcroft, A. and J.-M. Campin},
928      title =        {Re-scaled height coordinates for accurate representation
929                      of free-surface flows in ocean circulation models},
930      journal =      om,
931      year =         2004,
932      volume =       7,
933      pages =        {269-284},
934      doi   =        {10.1016/j.ocemod.2003.09.003},
935    }
936    
937    @Article{adcroft:04b,
938      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
939      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
940                      on the Expanded Spherical Cube},
941      journal =      mwr,
942      year =         2004,
943      volume =       132,
944      pages =        {2845-2863},
945      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
946      doi     =      {10.1175/MWR2823.1},
947    }
948    
949    @inproceedings{adcroft:04c,
950      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
951                      and P. Heimbach},
952      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
953      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
954                     Recent developments in numerical methods for atmosphere and
955                     ocean modelling},
956      year =         2004,
957      pages =        {139-149},
958      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
959     publisher =     ecmwf
960    }
961    
962    @Article{marshall:04,
963      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
964      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
965      journal =      mwr,
966      year =         2004,
967      volume =       132,
968      pages =        {2882-2894},
969      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
970      doi    =       {10.1175/MWR2835.1},
971  }  }
972    
973  @Article{visbeck:97,  @Article{visbeck:97,
974    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
975    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
976                    coarse-resolution ocean circulation models},    journal =      jpo,
   journal =      {JPO},  
977    year =         1997,    year =         1997,
978    volume =       27,    volume =       27,
979    number =       3,    number =       3,
# Line 760  Line 993 
993    pages =        {1-51}    pages =        {1-51}
994  }  }
995    
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   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
996  @Article{mjn:99,  @Article{mjn:99,
997    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
998    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 793  Line 1017 
1017    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
1018    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
1019                    at both high and low resolutions},                    at both high and low resolutions},
1020    journal =      {MWR},    journal =      mwr,
1021    year =         1999,    year =         1999,
1022    volume =       127,    volume =       127,
1023    pages =        {1928-1936}    pages =        {1928-1936},
1024      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1025      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1026  }  }
1027    
1028  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 811  Line 1037 
1037  @Article{wardle:00,  @Article{wardle:00,
1038    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
1039    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
1040    journal =      {JPO},    journal =      jpo,
1041    year =         2000,    year =         2000,
1042    volume =       30,    volume =       30,
1043    number =       10,    number =       10,
# Line 822  Line 1048 
1048    author =       {Adcroft, A. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
1049    title =        {Comparison of finite volume schemes and direct-space-time    title =        {Comparison of finite volume schemes and direct-space-time
1050                    methods for ocean circulation models},                    methods for ocean circulation models},
1051    journal =      {OM},    journal =      om,
1052    year =         2002,    year =         2002,
1053    note =         {in preparation}    note =         {in preparation}
1054  }  }
1055    
1056  @Article{adcroft:02,  @Article{adcroft:02,
1057    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
1058    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
1059    journal =      {OM},    journal =      om,
1060    year =         2002,    year =         2002,
1061    note =         {in preparation}    note =         {in preparation}
1062  }  }
# Line 846  Line 1072 
1072    volume =       17    volume =       17
1073  }  }
1074    
1075    @Article{miller_white:84,
1076      author =       {Miller, M. J. and White, A. A.},
1077      title =        {On the non-hydrostatic equations in pressure
1078                      and sigma coordiantes},
1079      journal =      qjrms,
1080      year =         1984,
1081      volume =       110,
1082      pages =        {515-533}
1083    }
1084    
1085    @Article{white:89,
1086      author =       {White, A. A.},
1087      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1088      journal =      qjrms,
1089      year =         1989,
1090      volume =       115,
1091      pages =        {1243-1251}
1092    }
1093    
1094  @Article{adcroft:98,  @Article{adcroft:98,
1095    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1096    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
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1112    
1113  @Article{griffies:00,  @Article{griffies:00,
1114    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1115    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1116                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1117    journal =      {MWR},    journal =      mwr,
1118    year =         2000,    year =         2000,
1119    volume =       128,    volume =       128,
1120    number =       8,    number =       8,
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1125    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1126    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1127                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1128    journal =      {JCP},    journal =      jcp,
1129    year =         1993,    year =         1993,
1130    volume =       105,    volume =       105,
1131    number =       2,    number =       2,
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1133  }  }
1134    
1135  @Article{campin:02,  @Article{campin:02,
1136    author =       {Campin et al.},    author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1137    title =        {Conservation of properties in a free-surface model},    title =        {Conservation of properties in a free-surface model},
1138    journal =      {OM},    journal =      om,
1139    year =         2002,    year =         2004,
1140    note =         {in preparation}    volume =       6,
1141      pages =        {221-244}
1142    }
1143    
1144    @Article{Cox87,
1145      author =       {M. D. Cox},
1146      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1147      journal =      {Ocean modelling},
1148      year =         1987,
1149      volume =       74,
1150      pages =        {1-5 (Unpublished manuscript)}
1151    }
1152    
1153    @Article{gretal:98,
1154      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1155      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1156      journal =      jpo,
1157      year =         1998,
1158      volume =       28,
1159      pages =        {805-830}
1160    }
1161    
1162    @ARTICLE{gr:98,
1163      author =       {S. M. Griffies},
1164      title =        {The {Gent-McWilliams} Skew Flux},
1165      journal =      jpo,
1166      year =         1998,
1167      volume =       28,
1168      pages =        {831-841}
1169    }
1170    
1171    
1172    @Article{gkw:91,
1173      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1174      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1175      journal =      climd,
1176      year =         1991,
1177      volume =       5,
1178      number =       4,
1179      pages =        {211-226},
1180      doi   =        {10.1007/BF00210006}
1181  }  }
1182    
1183  @Article{dm:95,  @Article{dm:95,
1184    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {G. Danabasoglu and J. C. McWilliams},
1185    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1186    journal =      {JC},    journal =      jclim,
1187    year =         1995,    year =         1995,
1188    volume =       8,    volume =       8,
1189    number =       12,    number =       12,
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1191  }  }
1192    
1193  @Article{ldd:97,  @Article{ldd:97,
1194    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {W. G. Large and G. Danabasoglu and S. D. Doney and J. C. McWilliams},
1195    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1196    journal =      {JPO},    journal =      jpo,
1197    year =         1997,    year =         1997,
1198    volume =       27,    volume =       27,
1199    number =       11,    number =       11,
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1201  }  }
1202    
1203  @Article{gkw:99,  @Article{gkw:99,
1204    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1205    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
1206                    coarse-resolution numerical models},    journal =      jpo,
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1207    year =         1999,    year =         1999,
1208    volume =       29,    volume =       29,
1209    number =       8,    number =       8,
1210    pages =        {1682-1700}    pages =        {1682-1700}
1211  }  }
1212    
1213  @Article{roe:85,  @incollection{roe:85,
1214    author =       {Roe, P.L.},   author         = {P.L. Roe},
1215    title =        {Some contributions to the modeling of discontinuous flows},   year           = 1985,
1216    journal =      {Lect. Notes Appl. Math.},   title          = {Some contributions to the modelling of discontinuous flows},
1217    year =         1985,   booktitle      = {Large-Scale Computations in Fluid Mechanics},
1218    volume =       22,   series         = {Lectures in Applied Mathematics},
1219    pages =        {163-193}   volume         = 22,
1220     pages          = {163-193},
1221     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1222     publisher      = {American Mathematical Society},
1223     address        = {Providence, RI},
1224    }
1225    
1226    @Article{trenberth90,
1227      author =       {K. M. Trenberth and J. Olson and W. G. Large},
1228      title =        {The Mean Annual Cycle in {G}lobal {O}cean Wind
1229                      Stress},
1230      journal =      jpo,
1231      year =         1990,
1232      volume =       20,
1233      pages =        {1742--1760}
1234    }
1235    
1236    @Article{molteni:03,
1237      author =       {F. Molteni},
1238      title =        {Atmospheric simulations using a {GCM} with simplified physical
1239                      parametrization, {I}: Model climatology and variability in
1240                      multidecadal experiments},
1241      journal =      climd,
1242      year =         2003,
1243      volume =       20,
1244      pages =        {175--191}
1245    }
1246    
1247    @Article{jiang99,
1248      author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
1249      title =        {An Assessment of the {G}eophysical {F}luid
1250                      {D}ynamics {L}aboratory Ocean Model with Coarse
1251                      Resolution: Annual-Mean Climatology},
1252      journal =      jgr,
1253      year =         1999,
1254      volume =       104,
1255      number =       {C11},
1256      pages =        {25,623--25,645}
1257    }
1258    
1259    @Article{szoeke02,
1260      author =       {de Szoeke, Roland A. and Roger M. Samelson},
1261      title =        {The Duality between the {B}oussinesq and
1262                      {N}on-{B}oussinesq Hydrostatic Equations of Motion},
1263      journal =      jpo,
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1265      volume =       32,
1266      number =       8,
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1268    }
1269    
1270    @Article{jackett95,
1271      author =       {David R. Jackett and Trevor J. McDougall},
1272      title =        {Minimal Adjustment of Hydrographic Profiles to
1273                      Achieve Static Stability},
1274      journal =      jaot,
1275      year =         1995,
1276      volume =       12,
1277      number =       4,
1278      pages =        {381--389}
1279    }
1280    
1281    @Article{mcdougall03,
1282      author =       {Trevor J. McDougall and David R. Jackett and Daniel
1283                      G. Wright and Rainer Feistel},
1284      title =        {Accurate and Computationally Efficient Algorithms
1285                      for Potential Temperature and Density of Seawater},
1286      journal =      jaot,
1287      year =         {2003},
1288      OPTkey =       {},
1289      OPTvolume =    {},
1290      OPTnumber =    {},
1291      OPTpages =     {},
1292      OPTmonth =     {},
1293      OPTnote =      {{\textup{In press}}},
1294      OPTannote =    {}
1295    }
1296    
1297    @TechReport{fofonoff83,
1298      author =       "Fofonoff, P. and Millard, Jr., R.C.",
1299      title =        "Algorithms for Computation of Fundamental Properties
1300                      of Seawater",
1301      institution =  "Unesco",
1302      year =         1983,
1303      type =         "Unesco Technical Papers in Marine Science",
1304      number =       44,
1305      pages =        {53 pp.}
1306    }
1307    
1308    @ARTICLE{zha98a,
1309      AUTHOR      = "J. Zhang and Hibler, III, W. D. and M. Steele
1310                     and D. A. Rothrock",
1311      TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1312      JOURNAL     = jpo,
1313      YEAR        = 1998,
1314      VOLUME      = 28,
1315      PAGES       = "191-217"
1316    }
1317    
1318    @ARTICLE{sem76,
1319      AUTHOR      = "Semtner, Jr., Albert J.",
1320      TITLE       = "A model for the thermodynamic growth of sea ice in
1321                     numerical investigations of climate",
1322      JOURNAL     = jpo,
1323      YEAR        = 1976,
1324      VOLUME      = 6,
1325      PAGES       = "379-389"
1326    }
1327    
1328    @ARTICLE{win00,
1329      AUTHOR      = "M. Winton",
1330      TITLE       = "A reformulated three-layer sea ice model",
1331      JOURNAL     = jaot,
1332      YEAR        = 2000,
1333      VOLUME      = 17,
1334      PAGES       = "525-531"
1335    }
1336    
1337    @ARTICLE{hib79,
1338      author =       {Hibler, III, W. D.},
1339      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1340      JOURNAL     = jpo,
1341      YEAR        = 1979,
1342      VOLUME      = 9,
1343      PAGES       = "815-846"
1344    }
1345    
1346    @ARTICLE{fla92,
1347      AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1348      TITLE       = "Modeling pack ice as a cavitating fluid",
1349      JOURNAL     = jpo,
1350      YEAR        = 1992,
1351      VOLUME      = 22,
1352      PAGES       = "626-651"
1353    }
1354    
1355    @ARTICLE{hun97,
1356      AUTHOR      = "E. C. Hunke and J. K. Dukowicz",
1357      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1358      JOURNAL     = jpo,
1359      YEAR        = 1997,
1360      VOLUME      = 27,
1361      PAGES       = "1849--1867"
1362    }
1363    
1364    @Article{hun01,
1365      author =       {Elizabeth C. Hunke},
1366      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1367                      Model: Linearization Issues},
1368      journal =      jcp,
1369      year =         2001,
1370      volume =       170,
1371      pages =        {18--38},
1372      doi =          {10.1006/jcph.2001.6710}
1373    }
1374    
1375    @ARTICLE{zha00,
1376      AUTHOR      = "Jinlun Zhang and Drew Rothrock",
1377      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1378      JOURNAL     = jgr,
1379      YEAR        = 2000,
1380      VOLUME      = 105,
1381      PAGES       = "3325--3338"
1382    }
1383    
1384    @Article{Shapiro_70,
1385      author =       {Shapiro, R.},
1386      title =        {Smoothing, filtering, and boundary effects},
1387      journal =      {Reviews of Geophysics and Space Physics},
1388      year =         {1970},
1389      volume =       {8},
1390      number =       {2},
1391      pages =        {359--387},
1392    }
1393    
1394    @TechReport{Dutkiewicz_etal_05,
1395      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1396      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1397                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1398                      in Climate Change Studies, Report 122},
1399      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1400      year =         {2005},
1401      OPTnumber =    {122},
1402      address =      {Cambridge, MA},
1403      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1404    }
1405    
1406    @Article{Follows_etal_05,
1407      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1408      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1409                      Biogeochemistry Models},
1410      journal =      {Ocean Modeling},
1411      year =         {{in press}},
1412      OPTkey =       {},
1413      OPTvolume =    {},
1414      OPTnumber =    {},
1415      OPTpages =     {},
1416    }
1417    
1418    @Article{McKinley_etal_04,
1419      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1420      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1421                      Equatorial Pacific and the North Atlantic},
1422      journal =      {Global Biogeochemical Cycles},
1423      year =         {2004},
1424      OPTkey =       {},
1425      volume =       {18},
1426      number =       {doi:10.1029/2003GB002179},
1427      OPTpages =     {},
1428    }
1429    
1430    @TechReport{Trenberth_etal_89,
1431      author =       {K. Trenberth and J. Olson and W. Large},
1432      title =        {A global wind stress climatology based on ECMWF analyses},
1433      institution =  {NCAR},
1434      year =         {1989},
1435      OPTkey =       {},
1436      OPTtype =      {},
1437      number =       {NCAR/TN-338+STR},
1438      address =      {Boulder, CO},
1439      OPTmonth =     {},
1440    }
1441    
1442    @Article{Wanninkhof_92,
1443      author =       {R. Wanninkhof},
1444      title =        {Relationship between wind speed and gas exchange over the ocean},
1445      journal =      jgr,
1446      year =         {1992},
1447      OPTkey =       {},
1448      volume =       {97},
1449      OPTnumber =    {},
1450      pages =        {7373--7382},
1451      OPTmonth =     {},
1452    }
1453    
1454    @incollection{black:77,
1455     author       = {A. K. Blackadar},
1456     year         = {1977},
1457     title        = {High Resolution Models of the Planetary Boundary Layer.},
1458     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1459     editor       = {Pfafflin and Zeigler},
1460     publisher    = {Gordon and Breach, Scientific Publishers}
1461    }
1462    
1463    @Article{chou:92,
1464     author       = {M-D. Chou},
1465     year         = {1992},
1466     title        = {A solar radiation model for use in climate studies.},
1467     journal      = jas,
1468     volume       = {49},
1469     pages        = {762-772}
1470    }
1471    
1472    @Article{chou:90,
1473     author       = {M-D. Chou},
1474     year         = {1990},
1475     title        = {Parameterizations for the absorption of solar radiation
1476                       by O$_2$ and CO$_2$ with applications to climate studies.},
1477     journal      = jclim,
1478     volume       = {3},
1479     pages        = {209-217}
1480    }
1481    
1482    @techreport{chsz:94,
1483     author       = {M.-D. Chou and M.J.Suarez},
1484     year         = {1994},
1485     title        = {An efficient thermal infrared radiation parameterization
1486    for use in general circulation models},
1487     institution  = {National Aeronautics and Space Administration},
1488     type         = {NASA Technical Memorandum},
1489     number       = {104606-Vol 3},
1490     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1491     note         = {http://www.gmao.nasa.gov/}
1492    }
1493    
1494    @Article{clarke:70,
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1497     title        = {Observational studies in the atmospheric boundary layer.},
1498     journal      = qjrms,
1499     volume       = {96},
1500     pages        = {91-114}
1501    }
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1506     title        = {NDVI-derived Land Cover Classification at Global Scales. },
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1510    }
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1512    @Article{dorsell:89,
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1514     year         = {1989},
1515     title        = {A global climatology of albedo, roughness length and stomatal
1516    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1517     journal      = jam,
1518     volume       = {28},
1519     pages        = {833-855}
1520    }
1521    
1522    @Article{helflab:88,
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1524     year         = {1988},
1525     title        = { Design of a non-singular level 2.5 second-order closure
1526    model for the prediction of atmospheric turbulence. },
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1528     volume       = {45},
1529     pages        = {113-132}
1530    }
1531    
1532    @inproceedings{helfetal:91,
1533     author       = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1534     year         = {1991},
1535     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1536     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1537     year         = 1991,
1538     pages        = {406-425},
1539     publisher    = {American Meteorological Society}
1540    }
1541    
1542    @Article{helfschu:95,
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1544     year         = {1995},
1545     title        = { Climatology of the
1546    Simulated Great Plains Low-Level Jet and Its contribution to the
1547    Continental Moisture Budget of the United States. },
1548     journal      = jclim,
1549     volume       = {8},
1550     pages        = {784-806}
1551    }
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1553    @Article{kondo:75,
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1556     title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
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1559     pages        = {91-112}
1560    }
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1562    @techreport{ks:91,
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1565     title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1566     institution  = {National Aeronautics and Space Administration},
1567     type         = {NASA Technical Memorandum},
1568     number       = {104538},
1569     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1570     note         = {http://www.gmao.nasa.gov/},
1571    }
1572    
1573    @Article{ks:92,
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1575     year         = {1992},
1576     title        = { Modeling the Land Surface Boundary
1577    in Climate Models as a Composite of Independent Vegetation Stands.},
1578     journal      = jgr,
1579     volume       = {97},
1580     pages        = {2697-2715}
1581    }
1582    
1583    @Article{lhans:74,
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1585     year         = {1974},
1586     title        = { A parameterization for the absorption of solar radiation
1587    in the Earth's atmosphere.  },
1588     journal      = jas,
1589     volume       = {31},
1590     pages        = {118-133}
1591    }
1592    
1593    @Article{larpond:81,
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1596     title        = {Open ocean momentum flux measurements in moderate to strong winds.},
1597     journal      = jpo,
1598     volume       = {11},
1599     pages        = {324-336}
1600    }
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1602    @Article{moorsz:92,
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1605     title        = {  Relaxed Arakawa Schubert: A parameterization of moist
1606    convection for general circulation models.},
1607     journal      = mwr,
1608     volume       = {120},
1609     pages        = {978-1002}
1610    }
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1618     publisher    = {American Meteorological Society}
1619    }
1620    
1621    @Article{reynetal:94,
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1624     title        = {Improved global sea surface temperature analyses using optimum interpolation.},
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1628    }
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1633     title        = {  A computation of the stratospheric
1634    diabatic circulation using an accurate radiative transfer model},
1635     journal      = jas,
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1637     pages        = {859-876}
1638    }
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1640    @Article{sudm:88,
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1642     year         = {1988},
1643     title        = {  The roles of dry convection, cloud-radiation feedback processes
1644    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1645     journal      = mwr,
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1647     pages        = {2366-2387}
1648    }
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1652     year         = {1996},
1653     title        = {  Dynamical aspects of climate simulations Using the GEOS
1654    General Circulation Model},
1655     institution  = {National Aeronautics and Space Administration},
1656     type         = {NASA Technical Memorandum},
1657     number       = {104606 Volume 10},
1658     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1659     note         = {http://www.gmao.nasa.gov/},
1660    }
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1666    turbulent fluid flow at high Reynolds and Peclet numbers.  },
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1668     volume       = {62},
1669     pages        = {601-623}
1670    }
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1672    @Article{yam:77,
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1675     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1676    atmospheric boundary layer.},
1677     journal      = {Atmos. Environ.},
1678     volume       = {11},
1679     pages        = {1015-1024}
1680    }
1681    
1682    @Article{zhouetal:95,
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1684     year         = {1995},
1685     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1686     journal      = qjrms,
1687     volume       = {122},
1688     pages        = {903-927}
1689    }
1690    
1691    @Article{breth:99,
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1693                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1694                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1695                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
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1697     title          = {An intercomparison of radiatively driven entrainment and turbulence
1698                      in a smoke cloud, as simulated by different numerical models.},
1699     journal        = qjrms,
1700     volume         = {125},
1701     pages          = {391-423}
1702                      }
1703    
1704    @Article{bm:99,
1705     author         = {A. C. Bushell and G.M. Martin},
1706     year           = 1999,
1707     title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1708     journal        = {Climate Dyn.},
1709     volume         = {15},
1710     pages          = {293-318}
1711                      }
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1713    @Article{Inn:01,
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1715     year           = 2001,
1716     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1717                      Implications for the Simulation of the Madden-Julian Oscillation.},
1718     journal        = {Climate Dyn.},
1719     volume         = {17},
1720     pages          = {777-794}
1721                      }
1722    
1723    @Article{kal:89,
1724     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1725                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1726     year           = 1989,
1727     title          = {Rules for Interchange of Physical Parameterizations.},
1728     journal        = bams,
1729     volume         = {70},
1730     pages          = {620-622}
1731                      }
1732    
1733    @Article{wo:98,
1734     author         = {D. Williamson and J.G. Olsen},
1735     year           = 1998,
1736     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1737     journal        = mwr,
1738     volume         = {126},
1739     pages          = {991-1000}
1740                      }
1741    
1742    @TechReport{MPI-std-20,
1743      author =       {{Message Passing Interface Forum}},
1744      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1745      institution =  {mpi-forum.org},
1746      year =         {1998},
1747    }
1748    
1749    @Article{cam08,
1750      author =       {Jean-Michel Campin and John Marshall and David
1751                      Ferreira},
1752      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1753                      Coordinate z$^\ast$},
1754      journal =      om,
1755      volume =       24,
1756      number =       {1--2},
1757      pages =        {1--14},
1758      doi =          {10.1016/j.ocemod.2008.05.005},
1759      year =         2008
1760    }
1761    
1762    @Article{geiger98,
1763      author =       {Cathleen A. Geiger and Hibler, III, William D. and
1764                      Stephen F. Ackley},
1765      title =        {Large-Scale Sea Ice Drift and Deformation:
1766                      {C}omparison between Models and Observations in the
1767                      Western {W}eddell {S}ea during 1992},
1768      journal =      jgr,
1769      year =         1998,
1770      volume =       103,
1771      number =       {C10},
1772      pages =        {21893--21913}
1773    }
1774    
1775    @InCollection{hibler84,
1776      author =       {Hibler, III, William D.},
1777      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1778                      increases},
1779      booktitle =    {Climate processes and climate sensitivity},
1780      pages =        {238--253},
1781      publisher =    {AGU},
1782      year =         1984,
1783      editor =       {J. E. Hansen and T. Takahashi},
1784      volume =       29,
1785      series =       {Geophysical Monograph},
1786      address =      {Washington, D.C.}
1787    }
1788    
1789    @Article{hibler87,
1790      author =       {Hibler, III, William D. and Kirk Bryan},
1791      title =        {A Diagnostic Ice-Ocean Model},
1792      journal =      jpo,
1793      year =         1987,
1794      volume =       17,
1795      number =       7,
1796      pages =        {987--1015}
1797    }
1798    
1799    @InCollection{hibler95,
1800      author =       {Hibler, III, William D. and Chi F. Ip},
1801      title =        {The effect of sea ice rheology on {A}rcitc buoy
1802                      drift},
1803      booktitle =    {Ice Mechanics},
1804      pages =        {255--264},
1805      publisher =    {Am. Soc. of Mech. Eng.},
1806      year =         1995,
1807      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1808      volume =       204,
1809      series =       {AMD},
1810      address =      {New York}
1811    }
1812    
1813    @Article{hibler97,
1814      author =       {Hibler, III, William D. and Erland M. Schulson},
1815      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1816                      Investigations of Climate},
1817      journal =      angl,
1818      year =         1997,
1819      volume =       25,
1820      pages =        {26--32}
1821    }
1822    
1823    @Article{hundsdorfer94,
1824      author =       {Willem Hundsdorfer and R. A. Trompert},
1825      title =        {Method of Lines and Direct Discretization: a
1826                      Comparison for Linear Advection},
1827      journal =      {Applied Numerical Mathematics},
1828      year =         1994,
1829      volume =       13,
1830      number =       6,
1831      pages =        {469--490},
1832      doi =          {10.1016/0168-9274(94)90009-4}
1833    }
1834    
1835    @Article{leppaeranta83,
1836      author =       {Matti Lepp{\"a}ranta},
1837      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1838                      Thickness in Subarctic Basins},
1839      journal =      {Nordic Hydrology},
1840      year =         1983,
1841      volume =       14,
1842      pages =        {59--70}
1843    }
1844    
1845    @Article{manabe79,
1846      author =       {S. Manabe and Kirk Bryan and M. J. Spelman},
1847      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1848                      Variation for Future Studies of Climate Sensitivity},
1849      journal =      dao,
1850      year =         1979,
1851      volume =       3,
1852      number =       {393--426}
1853    }
1854    
1855    @ARTICLE{menemenlis05,
1856      author =       {D. Menemenlis and C. Hill and A. Adcroft and
1857                      J.-M. Campin and B. Cheng and B. Ciotti and
1858                      I. Fukumori and A. Koehl and P. Heimbach and
1859                      C. Henze and T. Lee and D. Stammer and J. Taft and
1860                      J. Zhang},
1861      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1862                      Climate Research},
1863      journal =      eos,
1864      year =         2005,
1865      volume =       86,
1866      number =       9,
1867      pages =        {89, 95--96}
1868    }
1869    
1870    @Article{parkinson79,
1871      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1872      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1873      journal =      jgr,
1874      year =         1979,
1875      month =        jan,
1876      volume =       84,
1877      number =       {C1},
1878      pages =        {311--337},
1879      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1880      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1881                      System}
1882    }
1883    
1884    @Article{semtner84,
1885      author =       {Semtner, Jr., Albert J.},
1886      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1887                      Ice in Studies of Climatic Change},
1888      journal =      cch,
1889      year =         1984,
1890      volume =       6,
1891      number =       1,
1892      pages =        {27--37}
1893    }
1894    
1895    @Article{zhang97,
1896      author =       {Jinlun Zhang and Hibler, III, William D.},
1897      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
1898      journal =      jgr,
1899      year =         1997,
1900      volume =       102,
1901      number =       {C4},
1902      pages =        {8691--8702}
1903    }
1904    
1905    @Article{zhang03,
1906      author =       {Jinlun Zhang and Drew A. Rothrock},
1907      title =        {Modeling Global Sea Ice with a Thickness and
1908                      Enthalpy Distribution Model in Generalized
1909                      Curvilinear Coordinates},
1910      journal =      mwr,
1911      year =         2003,
1912      volume =       131,
1913      number =       5,
1914      pages =        {845--861}
1915    }
1916    
1917    @Article{beckmann99,
1918      author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
1919                      Timmermann},
1920      title =        {A Numerical Model of the {W}eddell {S}ea:
1921                      Large-Scale Circulation and Water Mass Distribution},
1922      journal =      jgr,
1923      year =         1999,
1924      volume =       104,
1925      number =       {C10},
1926      pages =        {23,375--23,392}
1927    }
1928    
1929    @Article{grosfeld97,
1930      author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1931                      Determann},
1932      title =        {Thermohaline Circulation and Interaction between Ice
1933                      Shelf Cavities and the Adjacent Open Water},
1934      journal =      jgr,
1935      year =         1997,
1936      volume =       102,
1937      number =       {C7},
1938      pages =        {15,595--15,610}
1939    }
1940    
1941    @Article{hellmer89,
1942      author =       {Hartmut H. Hellmer and Dirk J. Olbers},
1943      title =        {A Two-Dimensional Model of the Thermohaline
1944                      Circulation Under an Ice Shelf},
1945      journal =      {Antarct. Sci.},
1946      year =         1989,
1947      volume =       1,
1948      pages =        {325--336}
1949    }
1950    
1951    @Article{holland99,
1952      author =       {David M. Holland and Adrian Jenkins},
1953      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
1954                      Base of an Ice Shelf},
1955      journal =      jpo,
1956      year =         1999,
1957      volume =       29,
1958      number =       8,
1959      pages =        {1787--1800}
1960    }
1961    
1962    @Article{jenkins01,
1963      author =       {Adrian Jenkins and Hartmut H. Hellmer and David
1964                      M. Holland},
1965      title =        {The Role of Meltwater Advection in the Formulation
1966                      of Conservative Boundary Conditions at an Ice-Ocean
1967                      Interface},
1968      journal =      jpo,
1969      year =         2001,
1970      volume =       31,
1971      pages =        {285--296}}
1972    
1973    @Article{losch08,
1974      author =       {Martin Losch},
1975      title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
1976                      General Circulation Model},
1977      journal =      jgr,
1978      year =         2008,
1979      volume =       113,
1980      number =       {C08043},
1981      doi =          {10.1029/2007JC004368}
1982    }
1983    
1984    @Article{Dutay02,
1985     author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
1986        and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
1987        and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
1988        and G. Madec and E. Maier-Reimer and J.C. Marshall and R.J. Matear and P. Monfray
1989        and A. Mouchet and G.-K. Plattner and J. sarmiento and R. Schlitzer and R. Slater
1990        and I.J. Totterdell and M.-F. Weirig and Y. Yammanaka and A. Yool},
1991     year           = 2002,
1992     title          = {Evaluation of ocean model ventilation with CFC-11:
1993                       comparison of 13 global ocean models},
1994     journal        = om,
1995     volume         = {4},          number= {},             month   = {},
1996     pages          = {89-120}
1997                    }
1998    
1999    @Article{marsh06,
2000     author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
2001     year           = 2006,
2002     title          = {Estimates and Implications of Surface Eddy Diffusivity
2003                       in the Southern Ocean Derived from Tracer Transport},
2004     journal        = jpo,
2005     volume         = {36},          number= {},             month   = {},
2006     pages          = {1806-1821}
2007                    }
2008    
2009    @InProceedings{hoe-hill:99,
2010      author =       {Hoe, James C. and Chris Hill and Alistair Adcroft},
2011      title =        {A Personal Supercomputer for Climate Research},
2012      booktitle =    {In Proceedings of the ACM/IEEE Super-Computing Confrence},
2013      year =         1999,
2014      pages = {10.1109/SC.1999},
2015      publisher =    {IEEE},
2016  }  }
2017    
2018    @Article{stevens:90,
2019      author =       {Stevens, D. P.},
2020      title =        {On Open Boundary Conditions for Three Dimensional
2021                      Primitive Equation Ocean Circulation Models},
2022      journal =      {Geophys. Astrophys. Fl. Dyn.},
2023      year =         1990,
2024      volume =       51,
2025      pages =        {103--133}}
2026    
2027    @Article{kalnay96,
2028      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
2029                      W. Collins and D. Deaven and L. Gandin and
2030                      M. Iredell and S. Saha and G. White and J. Woollen
2031                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
2032                      W. Higgins and J. Janowiak and K. C. Mo and
2033                      C. Ropelewski and J. Wang and A. Leetmaa and
2034                      R. Reynolds and R. Jenne and D. Joseph},
2035      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
2036      journal =      bams,
2037      year =         1996,
2038      volume =       77,
2039      pages =        {437--471}
2040    }
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