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Revision 1.31 - (show annotations) (download)
Fri Nov 17 01:33:05 2006 UTC (17 years, 5 months ago) by jmc
Branch: MAIN
Changes since 1.30: +9 -0 lines
add Jamart & Ozer, 1986 (wet-point method).

1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
2 @string{bams = {Bull.~Am.~Met.~Soc.}}
3 @string{blm = {Bound.~Layer~Meteorol.}}
4 @string{climd = {Clim.~Dynamics}}
5 @string{jgr = {J.~Geophys.~Res.}}
6 @string{ijrs = {Int.~J.~Remote Sensing}}
7 @string{jas = {J.~Atmos.~Sci.}}
8 @string{jam = {J.~Appl.~Meteor.}}
9 @string{jpo = {J.~Phys.~Oceanogr.}}
10 @string{jclim = {J.~Clim.}}
11 @string{jcp = {J.~Comput.~Phys.}}
12 @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
13 @string{jfm = {J.~Fluid Mech.}}
14 @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
15 @string{jms = {J.~Mar.~Sys.}}
16 @string{om = {Ocean Modelling}}
17 @string{gaos = {Global Atmos.~Ocean System}}
18 @string{grl = {Geophys.~Res.~Lett.}}
19 @string{dsr = {Deep Sea Res.}}
20 @string{dao = {Dyn.~Atmos.~Oceans}}
21 @string{mwr = {Mon.~Wea.~Rev.}}
22 @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
23 @string{tel = {Tellus}}
24 @string{cup = {Cambridge University Press}}
25 @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
26 @string{ifremer = {IFREMER/CERSAT}}
27 @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
28 @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
29 @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
30 @string{mpi = {MPI f\"ur Meteorologie}}
31 @string{ecmwf = {ECMWF}}
32 @string{estec = {European Space Research and Technology Centre
33 (ESTEC)}}
34 @string{esa = {European Space Agency (ESA)}}
35
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38 A. Griewank and K. Haigler and P. Newman},
39 year = 1992,
40 title = {Automatic differentiation of advanced GFD codes
41 for multidisciplinary design},
42 journal = {Journal on Computing Systems in Engineering},
43 volume = {3},
44 pages = {625--638},
45 }
46
47 @incollection{bis:94,
48 author = {C.H. Bishof},
49 year = 1994,
50 title = {Automatic differentiation, tangent linear models
51 and pseudo-adjoints},
52 booktitle = {High Performance Computing in the Geosciences},
53 series = {Series C: Mathematical and Physical Sciences},
54 pages = {59--80},
55 editor = {F.X. {Le Dimet}},
56 publisher = {Kluwer},
57 address = {Dordrecht, NL},
58 }
59
60 @techreport{bis-eta:94,
61 author = {C. Bishof and A. Carle and P. Khademi and
62 A. Maurer},
63 year = 1994,
64 title = {The ADIFOR 2.0 system for the automatic
65 differentiation of FORTRAN 77 programs},
66 institution = {Argonne National Laboratory, Mathematics and
67 Computer Science Division},
68 type = {Argonne Preprint},
69 number = {ANL-MCS-P981-1194},
70 address = {ANL; 9700 South Cass Ave.;
71 Argonne (ILL), 90439; USA},
72 note = {http://www.mcs.anl.gov/autodiff/},
73 }
74
75 @ARTICLE{bugi-hill:06,
76 author = {V. Bugnion and C. Hill},
77 title = {Equilibration mechanisms in an adjoint ocean general
78 circulation model},
79 journal = {Ocean Dynamics},
80 year = {2006},
81 volume = {56},
82 number = {1},
83 pages = {51-61},
84 doi = {10.1007/s10236-005-0052-z},
85 }
86
87 @techreport{bis-roh:97,
88 author = {C. Bishof and L. Roh},
89 year = 1997,
90 title = {ADIC: An extensible automatic differentiation tool
91 for ANSI-C},
92 institution = {Argonne National Laboratory, Mathematics and
93 Computer Science Division},
94 type = {Argonne Preprint},
95 number = {ANL-MCS-P626-1196},
96 address = {ANL; 9700 South Cass Ave.;
97 Argonne (ILL), 90439; USA},
98 note = {http://www.mcs.anl.gov/autodiff/},
99 }
100
101 @Article{cou-tal:87,
102 author = {P. Courtier and O. Talagrand},
103 year = 1987,
104 title = {Variational assimilation of meteorological
105 observations with the adjoint vorticity equation.
106 II: Numerical results},
107 journal = qjrms,
108 volume = {113},
109 pages = {1329--1347},
110 }
111
112 @Article{cou-tal:90,
113 author = {P. Courtier and O. Talagrand},
114 year = 1990,
115 title = {Variational assimilation of meteorological
116 observations with direct and adjoint shallow-water
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118 journal = tel,
119 volume = {42A},
120 pages = {531--549},
121 }
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125 A. Hollingsworth},
126 year = 1994,
127 title = {A strategy for operational implementation of
128 4-D-VAR using an incremental approach},
129 journal = qjrms,
130 volume = {120},
131 pages = {1367--1387},
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133
134 @ARTICLE{dutk-etal:06,
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136 title = {Controls on ocean productivity and air-sea carbon flux:
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138 journal = grl,
139 year = {2006},
140 volume = {33},
141 pages = {L02603},
142 doi = {10.1029/2005GL024987},
143 }
144
145 @Article{err:97,
146 author = {R.M. Errico},
147 year = 1997,
148 title = {What is an adjoint model},
149 journal = bams,
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153
154 @Article{far-moo:92,
155 author = {B.F. Farrell and A.M. Moore},
156 year = {1992},
157 title = {An adjoint method for obtaining the most rapidly
158 growing perturbation to oceanic flows},
159 journal = jpo,
160 volume = {22},
161 pages = {338--349},
162 }
163
164 @Article{far-ioa:96a,
165 author = {B.F. Farrell and P. Ioannou},
166 year = {1996a},
167 title = {Generalized stability theory. Part I:
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169 journal = jas,
170 volume = {53},
171 pages = {2025--2040},
172 }
173
174 @Article{far-ioa:96b,
175 author = {B.F. Farrell and P. Ioannou},
176 year = {1996b},
177 title = {Generalized stability theory. Part I:
178 Nonautonomous operators},
179 journal = jas,
180 volume = {53},
181 pages = {2041--2053},
182 }
183
184 @techreport{fau-pap:98,
185 author = {C. Faure and Y. Papegay},
186 year = 1998,
187 title = {Odyss{\'e}e User's Guide. Version 1.7},
188 institution = {Institut National de Recherche en Informatique
189 et en Automatique},
190 type = {Rapport Technique},
191 number = {0224},
192 address = {INRIA; 2004, route des Luciolis, B.P. 93;
193 06902 Sophia Antipolis Cedex; France},
194 note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
195 }
196
197 @Article{fau:00,
198 author = {C. Faure},
199 year = {2000},
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201 journal = {Optimisation Methods and Software},
202 note = {in press},
203 }
204
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206 author = {P.R. Gent and J.C. McWilliams},
207 year = 1990,
208 title = {Isopycnal mixing in ocean circulation models},
209 journal = jpo,
210 volume = {20},
211 pages = {150--155},
212 }
213
214 @Article{gen-eta:95,
215 author = {P.R. Gent and J. Willebrand and T.J. McDougall
216 and J.C. McWilliams},
217 year = 1995,
218 title = {Parameterizing eddy-induced tracer transports in
219 ocean circulation models},
220 journal = jpo,
221 volume = {25},
222 pages = {463--474},
223 }
224
225 @Article{gie-kam:98,
226 author = {R. Giering and T. Kaminski},
227 year = 1998,
228 title = {Recipes for adjoint code construction},
229 journal = {ACM Transactions on Mathematical Software},
230 volume = 24,
231 pages = {437--474},
232 }
233
234 @techreport{gie:99,
235 author = {R. Giering},
236 year = 1999,
237 title = {Tangent linear and Adjoint Model Compiler.
238 Users manual 1.4 (TAMC Version 5.2)},
239 institution = {Massachusetts Institute of Technology},
240 type = {Report},
241 number = {~},
242 address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
243 02139; USA},
244 note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
245 }
246
247 @incollection{gie:00,
248 author = {R. Giering},
249 editor = {P. Kasibhatla and M. Heimann and P. Rayner and
250 N. Mahowald and R.G. Prinn and D.E. Hartley},
251 year = 2000,
252 booktitle = {Inverse methods in global biogeochemical cycles},
253 title = {Tangent linear and adjoint biogeochemical models},
254 publisher = {American Geophysical Union},
255 series = {Geophysical Monograph},
256 volume = {114},
257 address = {Washington, DC},
258 pages = {33--48},
259 }
260
261 @Article{gil-lem:89,
262 author = {J.C. Gilbert and C. Lemar\'echal},
263 year = 1989,
264 title = {Some numerical experiments with variable-storage
265 quasi-Newton algorithms},
266 journal = {Math. Programming},
267 volume = {45},
268 pages = {407--435},
269 }
270
271 @book{gil-eta:81,
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273 title = {Practical optimization},
274 year = 1981,
275 publisher = {Academic Press},
276 address = {London},
277 pages = {401 pp.},
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279
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281 author = {A. Griewank},
282 year = 1989,
283 title = {On automatic differentiation},
284 booktitle = {Mathematical Programming: Recent Developments and
285 Applications},
286 pages = {83--108},
287 editor = {M. Iri and K. Tanabe},
288 publisher = {Kluwer},
289 address = {Dordrecht, NL},
290 }
291
292 @Article{gri:92,
293 author = {A.~Griewank},
294 title = {Achieving logarithmic growth of temporal and spatial
295 complexity in reverse {A}utomatic {D}ifferentiation},
296 journal = {Optimization Methods and Software},
297 year = {1992},
298 volume = {1},
299 pages = {35--54}
300 }
301
302 @book{gri:00,
303 author = {A. Griewank},
304 title = {Evaluating Derivatives. Principles and Techniques
305 of Algorithmic Differentiation},
306 year = 2000,
307 series = {Frontiers in Applied Mathematics},
308 volume = {19},
309 publisher = {SIAM},
310 address = {Philadelphia},
311 pages = {369 pp.},
312 }
313
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315 author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
316 year = 1982,
317 title = {Sensitivity analysis of a radiative-convective
318 model by the adjoint method},
319 journal = jas,
320 volume = {39},
321 pages = {2038--3050},
322 }
323
324 @Article{Haney,
325 author = {R.L. Haney},
326 title = {Surface thermal boundary conditions for ocean
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328 journal = jpo,
329 year = 1971,
330 volume = 1,
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332 }
333
334 @Article{held-suar:94,
335 author = {I.M. Held and M.J. Suarez},
336 year = {1994},
337 title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
338 journal = {Bulletin of the American Meteorological Society},
339 volume = {75(10)},
340 pages = {1825-1830}
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342
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344 author = {C. Hill and M. Follows and V. Bugnion and
345 J. Marshall},
346 year = {2002},
347 title = {Spatial and Temporal Impacts of ocean general
348 circulation on carbon sequestration},
349 journal = {Global Biogeochemical Cycles},
350 note = {submitted},
351 }
352
353 @ARTICLE{hib80,
354 AUTHOR = "W. D. {Hibler, III}",
355 TITLE = "Modeling a Variable Thickness Sea Ice Cover",
356 JOURNAL = mwr,
357 YEAR = 1980,
358 VOLUME = 1,
359 PAGES = "1943-1973"
360 }
361
362 @Article{Holland75,
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364 year = {1975a},
365 title = {On the origin of mesoscale eddies and their contribution
366 to the general circulation of the ocean. I. A preliminary
367 numerical experiment},
368 journal = jpo,
369 volume = {5},
370 pages = {642-657}
371 }
372
373 @Article{hol-lin:75b,
374 author = {W.R. Holland and L. B. Lin},
375 year = {1975b},
376 title = {On the origin of mesoscale eddies and their contribution
377 to the general circulation of the ocean. II. A parameter
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379 journal = jpo,
380 volume = {5},
381 pages = {658-669}
382 }
383
384 @Article{jam-oze:86,
385 author = {B.M. Jamart and J. Ozer},
386 year = {1986},
387 title = {Numerical boundary layers and spurious residual flows},
388 journal = jgr,
389 volume = {91},
390 pages = {10,621-10,631}
391 }
392
393 @book{kas-eta:00,
394 author = {P. Kasibhatla and M. Heimann and P. Rayner and
395 N. Mahowald and R.G. Prinn and D.E. Hartley},
396 year = 2000,
397 title = {Inverse methods in global biogeochemical cycles},
398 publisher = {American Geophysical Union},
399 series = {Geophysical Monograph},
400 volume = {114},
401 address = {Washington, DC},
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403 }
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407 year = 1994,
408 title = {Oceanic vertical mixing: A review and a model
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413 }
414
415 @Article{lar-eta:97,
416 author = {W.G. Large and G. Danabasoglu and S.C. Doney
417 and J.C. McWilliams},
418 year = 1997,
419 title = {Sensitivity to surface forcing and boundary layer
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429 year = 1986,
430 title = {Variational algorithms for analysis and
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433 journal = tel,
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435 pages = {97--110},
436 }
437
438 @TechReport{lev:94a,
439 author = {S. Levitus and T.P.Boyer},
440 title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
441 institution = {NOAA Atlas NESDIS 3},
442 year = 1994,
443 OPTkey = {},
444 OPTtype = {},
445 OPTnumber = {},
446 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
447 OPTmonth = {},
448 OPTnote = {},
449 OPTannote = {}
450 }
451
452
453 @TechReport{Levitus94,
454 author = {S. Levitus and T.P.Boyer},
455 title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
456 institution = {NOAA Atlas NESDIS 4},
457 year = 1994,
458 OPTkey = {},
459 OPTtype = {},
460 OPTnumber = {},
461 OPTaddress = {U.S. Department of Commerce, Washington D.C.},
462 OPTmonth = {},
463 OPTnote = {},
464 OPTannote = {}
465 }
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467
468 @Article{lew-der:85,
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470 year = {1985},
471 title = {The use of adjoint equations to solve a variational
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473 journal = {Tellus},
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475 pages = {309--322},
476 }
477
478 @techreport{lon:88,
479 author = {R.B. Long},
480 year = 1988,
481 title = {Notes on assimilating observations into
482 numerical models},
483 institution = {Delft Hydraulics},
484 type = {Report},
485 number = {~},
486 pages = {38 pp.},
487 address = {Delft (NL)},
488 }
489
490 @ARTICLE{losc-heim:06,
491 author = {M. Losch and P. Heimbach},
492 title = {Adjoint sensitivity of an ocean general circulation model
493 to bottom topography},
494 journal = jpo,
495 year = {2006},
496 volume = {{in press}},
497 url = {http://mitgcm.org/pdfs/Los2006a.pdf},
498 }
499
500
501 @Article{maro-wun:93,
502 author = {J. Marotzke and C. Wunsch},
503 year = 1993,
504 title = {Finding the steady state of a general circulation
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506 Application to the North Atlantic Ocean},
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508 volume = {98, C11},
509 pages = {20,149--20,167},
510 }
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512 @Article{maro-eta:99,
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514 D. Stammer and C. Hill and T. Lee},
515 year = 1999,
516 title = {Construction of the adjoint MIT ocean general
517 circulation model and application to Atlantic heat
518 transport variability},
519 journal = jgr,
520 volume = {104, C12},
521 pages = {29,529--29,547},
522 }
523
524 @Article{mars-eta:97a,
525 author = {J. Marshall and C. Hill and L. Perelman and
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527 year = {1997a},
528 title = {Hydrostatic, quasi-hydrostatic and
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530 journal = jgr,
531 volume = {102, C3},
532 pages = {5,733--5,752},
533 }
534
535 @Article{mars-eta:97b,
536 author = {J. Marshall and A. Adcroft and C. Hill and
537 L. Perelman and C. Heisey},
538 year = {1997b},
539 title = {Hydrostatic, quasi-hydrostatic and
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541 journal = jgr,
542 volume = {102, C3},
543 pages = {5,753--5,766},
544 }
545
546 @Article{mars-sha:98,
547 author = {J. Marshall and H. Jones and C. Hill},
548 year = 1998,
549 title = {Efficient ocean modeling using
550 non-hydrostatic algorithms},
551 journal = jms,
552 volume = {18},
553 pages = {115--134},
554 url = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
555 doi = {10.1016/S0924-7963\%2898\%2900008-6},
556 }
557
558 @Article{mcw:96,
559 author = {J. McWilliams},
560 year = 1996,
561 title = {Modeling the oceanic general circulation},
562 journal = arfm,
563 volume = {28},
564 pages = {215--248},
565 }
566
567 %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
568 %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
569 %% (Available from Unidata or in PostScript form by anonymous FTP from
570 %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
571 %% a hypertext version of the User's Guide available at
572 %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
573 %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
574 %% also available.
575
576 @TechReport{rew:97,
577 author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
578 title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
579 An Interface for Data Access, Version 3},
580 institution = {Unidata Program Center},
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616 volume = {C 284},
617 editor = {{D.L.T. Anderson and J. Willebrand}},
618 publisher = {Springer-Verlag},
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620 }
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630 note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
631 url = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
632 }
633
634 @techreport{sta-eta:97,
635 author = {D. Stammer and C. Wunsch and R. Giering and
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638 year = 1997,
639 title = {The global ocean circulation estimated from
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642 institution = {Center for Global Change Science, Massachusetts
643 Institute of Technology},
644 type = {Technical Report},
645 number = {49},
646 pages = {40 pp.},
647 address = {Cambridge (MA), USA},
648 }
649
650 @ARTICLE{stam-eta:01,
651 author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
652 title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
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654 year = {2002a},
655 volume = {107(C9)},
656 pages = {3118},
657 doi = {10.1029/2001JC000888},
658 }
659
660
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663 year = 1948,
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665 journal = {Trans. Am. Geophys. Union},
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668 }
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670 @Article{tal-cou:87,
671 author = {O. Talagrand and P. Courtier},
672 year = 1987,
673 title = {Variational assimilation of meteorological
674 observations with the adjoint vorticity equation.
675 I: Theory},
676 journal = qjrms,
677 volume = {113},
678 pages = {1311--1328},
679 }
680
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682 author = {O. Talagrand},
683 year = 1997,
684 title = {Assimilation of observations, an introduction},
685 journal = {J.~Meteor.~Soc.~Japan},
686 volume = {75},
687 pages = {191--209},
688 }
689
690 @book{tar:87,
691 author = {A. Tarantola},
692 title = {Inverse Problem Theory: Methods for data fitting
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694 year = 1987,
695 publisher = {Elsevier},
696 address = {Amsterdam},
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701 author = {W.C. Thacker},
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703 title = {Three lectures on fitting numerical models to
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706 type = {Report},
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708 pages = {64 pp.},
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715 title = {Fitting dynamics to data},
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720
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722 author = {W.C. Thacker},
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