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# Line 1  Line 1 
1    @string{angl    = {Ann.\ Glaciol.}}
2  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
3  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{climd   = {Clim.~Dynamics}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{cch     = {Clim.\ Change}}
7    @string{cup     = {Cambridge University Press}}
8    @string{dao     = {Dyn.~Atmos.~Oceans}}
9    @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
10    @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
11    @string{dsr     = {Deep Sea Res.}}
12    @string{ecmwf   = {ECMWF}}
13    @string{eos     = {Eos~Trans.\ AGU}}
14    @string{esa     = {European Space Agency (ESA)}}
15    @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16    @string{estec   = {European Space Research and Technology Centre (ESTEC)}}
17    @string{gaos    = {Global Atmos.~Ocean System}}
18    @string{grl     = {Geophys.~Res.~Lett.}}
19    @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
20    @string{ifremer = {IFREMER/CERSAT}}
21    @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
22    @string{jam     = {J.~Appl.~Meteor.}}
23    @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
24  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
 @string{jpo     = {J.~Phys.~Oceanogr.}}  
25  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
26  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{jcp     = {J.~Comput.~Phys.}}
27  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
28  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jgr     = {J.~Geophys.~Res.}}
29    @string{ijrs    = {Int.~J.~Remote Sensing}}
30  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
31  @string{gaos    = {Global Atmos.~Ocean System}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
32  @string{grl     = {Geophys.~Res.~Lett.}}  @string{mpi     = {MPI f\"ur Meteorologie}}
 @string{dsr     = {Deep Sea Res.}}  
 @string{dao     = {Dyn.~Atmos.~Oceans}}  
33  @string{mwr     = {Mon.~Wea.~Rev.}}  @string{mwr     = {Mon.~Wea.~Rev.}}
34    @string{om      = {Ocean Modelling}}
35    @string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
37    @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38  @string{tel     = {Tellus}}  @string{tel     = {Tellus}}
 @string{cup     = {Cambridge University Press}}  
 @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}  
 @string{ifremer = {IFREMER/CERSAT}}  
 @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}  
 @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}  
 @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}  
 @string{mpi     = {MPI f\"ur Meteorologie}}  
 @string{ecmwf   = {ECMWF}}  
 @string{estec   = {European Space Research and Technology Centre  
                         (ESTEC)}}  
 @string{esa     = {European Space Agency (ESA)}}  
39    
40  @Article{bis-eta:92,  @Article{bis-eta:92,
41   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 39  Line 47 
47   volume         = {3},   volume         = {3},
48   pages          = {625--638},   pages          = {625--638},
49                    }                    }
50    
51  @incollection{bis:94,  @incollection{bis:94,
52   author         = {C.H. Bishof},   author         = {C.H. Bishof},
53   year           = 1994,   year           = 1994,
# Line 52  Line 60 
60   publisher      = {Kluwer},   publisher      = {Kluwer},
61   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
62                    }                    }
63    
64  @techreport{bis-eta:94,  @techreport{bis-eta:94,
65   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
66                    A. Maurer},                    A. Maurer},
# Line 63  Line 71 
71                    Computer Science Division},                    Computer Science Division},
72   type           = {Argonne Preprint},   type           = {Argonne Preprint},
73   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
74   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
75                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
76   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
77                    }                    }
78    
79    @Article{bouillon13,
80      author =       {Sylvain Bouillon and Thierry Fichefet and Vincent
81                      Legat and Gurvan Madec},
82      title =        {The Elastic-Viscous-Plastic Method Revisited},
83      journal =      om,
84      volume =       71,
85      number =       0,
86      pages =        {2--12},
87      year =         2013,
88      note =         {Arctic Ocean},
89      issn =         {1463-5003},
90      doi =          {10.1016/j.ocemod.2013.05.013},
91      url =          {http://dx.doi.org/10.1016/j.ocemod.2013.05.013},
92    }
93    @ARTICLE{bryan:84,
94      author = {Kirk Bryan},
95      title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
96      journal = jpo,
97      year = {1984},
98      volume = {14},
99      number = {4},
100      pages = {666-673},
101    }
102    
103    @ARTICLE{bugi-hill:06,
104      author = {V. Bugnion and C. Hill},
105      title = {Equilibration mechanisms in an adjoint ocean general
106               circulation model},
107      journal = {Ocean Dynamics},
108      year = {2006},
109      volume = {56},
110      number = {1},
111      pages = {51-61},
112      doi   = {10.1007/s10236-005-0052-z},
113    }
114    
115  @techreport{bis-roh:97,  @techreport{bis-roh:97,
116   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
117   year           = 1997,   year           = 1997,
# Line 77  Line 121 
121                    Computer Science Division},                    Computer Science Division},
122   type           = {Argonne Preprint},   type           = {Argonne Preprint},
123   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
124   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
125                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
126   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
127                    }                    }
128    
129    @Article{castro-morales14,
130      author =       {Karel Castro-Morales and Frank Kauker and Martin
131                      Losch and Stefan Hendricks and Kathrin Riemann-Campe
132                      and R{\"u}diger Gerdes},
133      title =        {Sensitivity of Simulated {A}rctic Sea Ice to
134                      Realistic Ice Thickness Distributions and Snow
135                      Parameterizations},
136      journal =      jgr,
137      issn =         {2169-9291},
138      year =         2014,
139      volume =       119,
140      number =       1,
141      pages =        {559--571},
142      url =          {http://dx.doi.org/10.1002/2013JC009342},
143      doi =          {10.1002/2013JC009342},
144    }
145    
146  @Article{cou-tal:87,  @Article{cou-tal:87,
147   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
148   year           = 1987,   year           = 1987,
149   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
150                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
151                    II: Numerical results},                    II: Numerical results},
152   journal        = qjrms,   journal        = qjrms,
153   volume         = {113},   volume         = {113},
154   pages          = {1329--1347},   pages          = {1329--1347},
155                    }                    }
156    
157  @Article{cou-tal:90,  @Article{cou-tal:90,
158   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
159   year           = 1990,   year           = 1990,
# Line 103  Line 164 
164   volume         = {42A},   volume         = {42A},
165   pages          = {531--549},   pages          = {531--549},
166                    }                    }
167    
168  @Article{cou-eta:94,  @Article{cou-eta:94,
169   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
170                    A. Hollingsworth},                    A. Hollingsworth},
# Line 114  Line 175 
175   volume         = {120},   volume         = {120},
176   pages          = {1367--1387},   pages          = {1367--1387},
177                    }                    }
178    
179    @ARTICLE{durr:91,
180      author = {Dale R. Durran},
181      title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
182               to Leapfrog Time Differencing},
183      journal = mwr,
184      year = {1991},
185      volume = {119},
186      pages  = {702-720},
187    }
188    
189    
190    @ARTICLE{dutk-etal:06,
191      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
192      title = {Controls on ocean productivity and air-sea carbon flux:
193               An adjoint model sensitivity study},
194      journal = grl,
195      year = {2006},
196      volume = {33},
197      pages  = {L02603},
198      doi    = {10.1029/2005GL024987},
199    }
200    
201  @Article{err:97,  @Article{err:97,
202   author         = {R.M. Errico},   author         = {R.M. Errico},
203   year           = 1997,   year           = 1997,
# Line 123  Line 206 
206   volume         = {78},   volume         = {78},
207   pages          = {2577--2591},   pages          = {2577--2591},
208                    }                    }
209    
210  @Article{far-moo:92,  @Article{far-moo:92,
211   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
212   year           = {1992},   year           = {1992},
# Line 133  Line 216 
216   volume         = {22},   volume         = {22},
217   pages          = {338--349},   pages          = {338--349},
218                    }                    }
219    
220  @Article{far-ioa:96a,  @Article{far-ioa:96a,
221   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
222   year           = {1996a},   year           = {1996a},
# Line 143  Line 226 
226   volume         = {53},   volume         = {53},
227   pages          = {2025--2040},   pages          = {2025--2040},
228                    }                    }
229    
230  @Article{far-ioa:96b,  @Article{far-ioa:96b,
231   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
232   year           = {1996b},   year           = {1996b},
# Line 153  Line 236 
236   volume         = {53},   volume         = {53},
237   pages          = {2041--2053},   pages          = {2041--2053},
238                    }                    }
239    
240  @techreport{fau-pap:98,  @techreport{fau-pap:98,
241   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
242   year           = 1998,   year           = 1998,
# Line 166  Line 249 
249                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
250   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
251                    }                    }
252    
253  @Article{fau:00,  @Article{fau:00,
254   author         = {C. Faure},   author         = {C. Faure},
255   year           = {2000},   year           = {2000},
# Line 174  Line 257 
257   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
258   note           = {in press},   note           = {in press},
259                    }                    }
260    
261    @Article{fer-eta:05,
262     author         = {D. Ferreira and J. Marshall and P. Heimbach},
263     year           = 2005,
264     title          = {Estimating Eddy Stresses by Fitting Dynamics to Observations
265                       using a Residual-Mean Ocean Circulation Model and Its Adjoint},
266     journal        = jpo,
267     volume         = {35},
268     pages          = {1891--1910},
269                      }
270    
271    @Article{for-eta:15,
272     author         = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.},
273     title          = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation},
274     journal        = {Geoscientific Model Development},
275     volume         = {8},
276     year           = {2015},
277     number         = {10},
278     pages          = {3071--3104},
279     url            = {http://www.geosci-model-dev.net/8/3071/2015/},
280     doi            = {10.5194/gmd-8-3071-2015}
281    }
282    
283    @Article{gas-eta:90,
284     author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
285     year           = 1990,
286     title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
287                       Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
288                       Upper Ocean Study Site},
289     journal        = jgr,
290     volume         = {95 (C9)},
291     pages          = {16,179--16,193},
292                      }
293    
294  @Article{gen-mcw:90,  @Article{gen-mcw:90,
295   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
296   year           = 1990,   year           = 1990,
297   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
298   journal        = jpo,   journal        = jpo,
299   volume         = {20},   volume         = {20},
300   pages          = {150--155},   pages          = {150--155},
301                    }                    }
302    
303  @Article{gen-eta:95,  @Article{gen-eta:95,
304   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
305   year           = 1995,   year           = 1995,
306   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
307   journal        = jpo,   journal        = jpo,
308   volume         = {25},   volume         = {25},
309   pages          = {463--474},   pages          = {463--474},
310                    }                    }
311    
312  @Article{gie-kam:98,  @Article{gie-kam:98,
313   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
314   year           = 1998,   year           = 1998,
# Line 207  Line 321 
321  @techreport{gie:99,  @techreport{gie:99,
322   author         = {R. Giering},   author         = {R. Giering},
323   year           = 1999,   year           = 1999,
324   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
325                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
326   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
327   type           = {Report},   type           = {Report},
# Line 216  Line 330 
330                    02139; USA},                    02139; USA},
331   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
332                    }                    }
333    
334  @incollection{gie:00,  @incollection{gie:00,
335   author         = {R. Giering},   author         = {R. Giering},
336   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 240  Line 354 
354   volume         = {45},   volume         = {45},
355   pages          = {407--435},   pages          = {407--435},
356                    }                    }
357    
358  @book{gil-eta:81,  @book{gil-eta:81,
359   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
360   title          = {Practical optimization},   title          = {Practical optimization},
361   year           = 1981,   year           = 1981,
362   publisher      = {Academic Press},   publisher      = {Academic Press},
363   address        = {London},   address        = {London},
364   pages          = {401 pp.},   pages          = {401 pp.},
365                    }                    }
366                                                                      
367    @incollection{gri:89,
368     author         = {A. Griewank},
369     year           = 1989,
370     title          = {On automatic differentiation},
371     booktitle      = {Mathematical Programming: Recent Developments and
372                      Applications},
373     pages          = {83--108},
374     editor         = {M. Iri and K. Tanabe},
375     publisher      = {Kluwer},
376     address        = {Dordrecht, NL},
377                      }
378    
379    @Article{gri:92,
380      author =       {A.~Griewank},
381      title =        {Achieving logarithmic growth of temporal and spatial
382      complexity in reverse {A}utomatic {D}ifferentiation},
383      journal       = {Optimization Methods and Software},
384      year          = {1992},
385      volume        = {1},
386      pages         = {35--54}
387    }
388    
389  @book{gri:00,  @book{gri:00,
390   author         = {A. Griewank},   author         = {A. Griewank},
391   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 258  Line 394 
394   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
395   volume         = {19},   volume         = {19},
396   publisher      = {SIAM},   publisher      = {SIAM},
397   address        = {Philadelphia},   address        = {Philadelphia},
398   pages          = {369 pp.},   pages          = {369 pp.},
399                    }                    }
400                                                                      
401  @Article{hal-eta:82,  @Article{hal-eta:82,
402   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
403   year           = 1982,   year           = 1982,
# Line 271  Line 407 
407   volume         = {39},   volume         = {39},
408   pages          = {2038--3050},   pages          = {2038--3050},
409                    }                    }
410    
411    @Article{Haney,
412      author =       {R.L. Haney},
413      title =        {Surface thermal boundary conditions for ocean
414                      circulation models},
415      journal =      jpo,
416      year =         1971,
417      volume =       1,
418      pages =        {241--248}
419    }
420    
421    @Article{held-suar:94,
422     author         = {I.M. Held and M.J. Suarez},
423     year           = {1994},
424     title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
425     journal        = {Bulletin of the American Meteorological Society},
426     volume         = {75(10)},
427     pages          = {1825-1830}
428    }
429    
430  @Article{hil-eta:01,  @Article{hil-eta:01,
431   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
432                    J. Marshall},                    J. Marshall},
433   year           = {2001},   year           = {2002},
434   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
435                    circulation on carbon sequestration},                    circulation on carbon sequestration},
436   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
437   note           = {submitted},   note           = {submitted},
438                    }                    }
439    
440    @ARTICLE{hib80,
441      author =       {Hibler, III, William D.},
442      TITLE       = "Modeling a Variable Thickness Sea Ice Cover",
443      JOURNAL     = mwr,
444      YEAR        = 1980,
445      VOLUME      = 1,
446      PAGES       = "1943-1973"
447    }
448    
449    @Article{Holland75,
450     author         = {W.R. Holland and L. B. Lin},
451     year           = {1975a},
452     title          = {On the origin of mesoscale eddies and their contribution
453                       to the general circulation of the ocean. I. A preliminary
454                       numerical experiment},
455     journal        = jpo,
456     volume         = {5},
457     pages          = {642-657}
458                      }
459    
460    @Article{hol-lin:75b,
461     author         = {W.R. Holland and L. B. Lin},
462     year           = {1975b},
463     title          = {On the origin of mesoscale eddies and their contribution
464                       to the general circulation of the ocean. II. A parameter
465                       study},
466     journal        = jpo,
467     volume         = {5},
468     pages          = {658-669}
469                      }
470    
471    @Article{jam-oze:86,
472     author         = {B.M. Jamart and J. Ozer},
473     year           = {1986},
474     title          = {Numerical boundary layers and spurious residual flows},
475     journal        = jgr,
476     volume         = {91},
477     pages          = {10,621-10,631}
478                      }
479    
480  @book{kas-eta:00,  @book{kas-eta:00,
481   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
482                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 297  Line 492 
492  @Article{lar-eta:94,  @Article{lar-eta:94,
493   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
494   year           = 1994,   year           = 1994,
495   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
496   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
497   volume         = {32},   volume         = {32},
498   pages          = {363--403},   pages          = {363--403},
499                    }                    }
500    
501  @Article{lar-eta:97,  @Article{lar-eta:97,
502   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
503                    and J.C. McWilliams},                    and J. C. McWilliams},
504   year           = 1997,   year           = 1997,
505   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
506                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
507   journal        = jpo,   journal        = jpo,
508   volume         = {27},   volume         = {27},
509     number         = 11,
510   pages          = {2418--2447},   pages          = {2418--2447},
511                    }                    }
512    
513  @Article{led-tal:86,  @Article{led-tal:86,
514   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
515   year           = 1986,   year           = 1986,
# Line 326  Line 520 
520   volume         = {38A},   volume         = {38A},
521   pages          = {97--110},   pages          = {97--110},
522                    }                    }
523    
524    @TechReport{lev:94a,
525      author =       {S. Levitus and T.P.Boyer},
526      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
527      institution =  {NOAA Atlas NESDIS 3},
528      year =         1994,
529      OPTkey =       {},
530      OPTtype =      {},
531      OPTnumber =    {},
532      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
533      OPTmonth =     {},
534      OPTnote =      {},
535      OPTannote =    {}
536    }
537    
538    
539    @TechReport{Levitus94,
540      author =       {S. Levitus and T.P.Boyer},
541      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
542      institution =  {NOAA Atlas NESDIS 4},
543      year =         1994,
544      OPTkey =       {},
545      OPTtype =      {},
546      OPTnumber =    {},
547      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
548      OPTmonth =     {},
549      OPTnote =      {},
550      OPTannote =    {}
551    }
552    
553    
554  @Article{lew-der:85,  @Article{lew-der:85,
555   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
556   year           = {1985},   year           = {1985},
# Line 336  Line 560 
560   volume         = {37A},   volume         = {37A},
561   pages          = {309--322},   pages          = {309--322},
562                    }                    }
563    
564  @techreport{lon:88,  @techreport{lon:88,
565   author         = {R.B. Long},   author         = {R.B. Long},
566   year           = 1988,   year           = 1988,
# Line 348  Line 572 
572   pages          = {38 pp.},   pages          = {38 pp.},
573   address        = {Delft (NL)},   address        = {Delft (NL)},
574                    }                    }
575    
576    @ARTICLE{losc-heim:06,
577      author =       {Martin Losch and Patrick Heimbach},
578      title =        {Adjoint Sensitivity of an Ocean General Circulation
579                      Model to Bottom Topography},
580      journal =      jpo,
581      year =         2007,
582      volume =       37,
583      doi =          {10.1175/JPO3017.1},
584      number =       2,
585      pages =        {377--393},
586      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
587    }
588    
589    
590  @Article{maro-wun:93,  @Article{maro-wun:93,
591   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
592   year           = 1993,   year           = 1993,
# Line 359  Line 597 
597   volume         = {98, C11},   volume         = {98, C11},
598   pages          = {20,149--20,167},   pages          = {20,149--20,167},
599                    }                    }
600    
601  @Article{maro-eta:99,  @Article{maro-eta:99,
602   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
603                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
604   year           = 1999,   year           = 1999,
605   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 371  Line 609 
609   volume         = {104, C12},   volume         = {104, C12},
610   pages          = {29,529--29,547},   pages          = {29,529--29,547},
611                    }                    }
612    
613  @Article{mars-eta:97a,  @Article{mars-eta:97a,
614   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
615                    A. Adcroft},                    A. Adcroft},
# Line 382  Line 620 
620   volume         = {102, C3},   volume         = {102, C3},
621   pages          = {5,733--5,752},   pages          = {5,733--5,752},
622                    }                    }
623    
624  @Article{mars-eta:97b,  @Article{mars-eta:97b,
625   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
626                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
627   year           = {1997b},   year           = {1997b},
628   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 393  Line 631 
631   volume         = {102, C3},   volume         = {102, C3},
632   pages          = {5,753--5,766},   pages          = {5,753--5,766},
633                    }                    }
634    
635  @Article{mars-sha:98,  @Article{mars-eta:98,
636   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
637   year           = 1998,   year           = 1998,
638   title          = {Efficient ocean modeling using   title          = {Efficient ocean modeling using
# Line 402  Line 640 
640   journal        = jms,   journal        = jms,
641   volume         = {18},   volume         = {18},
642   pages          = {115--134},   pages          = {115--134},
643     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
644     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
645                    }                    }
646    
647  @Article{mcw:96,  @Article{mol:09,
648   author         = {J. McWilliams},   author         = {Andrea Molod},
649   year           = 1996,   year           = 2009,
650   title          = {Modeling the oceanic general circulation},   title          = {Running {GCM} physics and dynamics on different grids:
651   journal        = arfm,                     algorithm and tests},
652   volume         = {28},   journal        = tel,
653   pages          = {215--248},   volume         = {61A},
654     pages          = {381--393},
655                    }                    }
656    
657    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
658    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
659    %% (Available from Unidata or in PostScript form by anonymous FTP from
660    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
661    %%   a hypertext version of the User's Guide available at
662    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
663    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
664    %%   also available.
665    
666    @incollection{naum-etal:06,
667            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
668            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
669            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
670            Pages = {~},
671            Publisher = {TU Delft},
672            Title = {Adjoint code by source transformation with OpenAD/F},
673            Year = {2006}}
674    
675    @Article{orl:76,
676     author         = {I. Orlanski},
677     year           = 1976,
678     title          = {A simple boundary condition for unbounded hyperbolic flows},
679     journal        = jcp,
680     volume         = {21},
681     pages          = {251--269},
682                    }
683    
684    @Article{pal-rom:97,
685     author         = {T. Paluszkiewicz and R.D. Romea},
686     year           = 1997,
687     title          = {A one-dimensional model for the parameterization
688                      of deep convection in the ocean},
689     journal        = dao,
690     volume         = {26},
691     pages          = {95--130},
692                      }
693    
694    @TechReport{rew:97,
695      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
696      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
697                      An Interface for Data Access, Version 3},
698      institution =  {Unidata Program Center},
699      type =         {Report},
700      address =      {Boulder, Colorado},
701      year =         1997,
702      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
703    }
704    
705    
706  @Article{res-eta:98,  @Article{res-eta:98,
707   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
708   year           = 1998,   year           = 1998,
# Line 422  Line 712 
712   volume         = {19},   volume         = {19},
713   pages          = {1586--1605},   pages          = {1586--1605},
714                    }                    }
715    
716  @Article{ros-eta:93,  @Article{ros-eta:93,
717   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
718   year           = 1993,   year           = 1993,
# Line 431  Line 721 
721   volume         = {45A},   volume         = {45A},
722   pages          = {558--568},   pages          = {558--568},
723                    }                    }
724    
725  @incollection{she-and:89,  @incollection{she-and:89,
726   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
727   year           = 1989,   year           = 1989,
728   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
729                    technique},                    technique},
730   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
731                    Combining data and dynamics},                    Combining data and dynamics},
# Line 446  Line 736 
736   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
737   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
738                    }                    }
739    
740  @techreport{sta-eta:97,  @article{utke-etal:08,
741      Author =       {J. Utke and U. Naumann and M. Fagan and N. Tallent
742                      and M. Strout and P. Heimbach and C. Hill and
743                      D. Ozyurt and C. Wunsch},
744      Date-Modified ={2007-11-19 10:15:08 -0500},
745      Journal =      {{ACM} Transactions on Mathematical Software},
746      Pages =        {~},
747      Title =        {OpenAD/F: A modular open source tool for automatic
748                      differentiation of Fortran codes},
749      Volume =       {34(4)},
750      Year =         2008
751    }
752    
753    @Article{DaSilva94,
754     author         = {A. da Silva and A. C. Young and S. Levitus},
755     year           = 1994,
756     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
757     journal        = {NOAA Atlas NESDIS},
758     volume         = {6},
759     publisher      = {U.S. Department of Commerce},
760     address        = {Washington, D.C. (USA)},
761     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
762     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
763                      }
764    
765    @techreport{stam-etal:97,
766   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
767                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
768                    C. Hill},                    C. Hill},
769   year           = 1997,   year           = 1997,
770   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
771                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
772                    model},                    model},
773   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 462  Line 777 
777   pages          = {40 pp.},   pages          = {40 pp.},
778   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
779                    }                    }
780    
781  @Article{sta-eta:01,  @article{stam-etal:02,
782   author         = {D. Stammer and C. Wunsch and R. Giering and    author =       {D. Stammer and C. Wunsch and R. Giering and
783                    C. Eckert and P. Heimbach and J. Marotzke and                    C. Eckert and P. Heimbach and J. Marotzke and
784                    A. Adcroft and C. Hill and J. Marshall},                    A. Adcroft and C.N. Hill and J. Marshall},
785   year           = 2001,    title =        {The global ocean circulation and transports during
786   title          = {The global ocean circulation during 1992 -- 1997,                    1992 -- 1997, estimated from ocean observations and
787                    estimated from ocean observations and a general                    a general circulation model.},
788                    circulation model},    journal =      jgr,
789   journal        = jgr,    year =         {2002a},
790   note           = {submitted},    volume =       {107(C9)},
791      pages =        {3118},
792      doi =          {10.1029/2001JC000888},
793    }
794    
795    
796    @Article{Stommel66,
797     author         = {H. Stommel},
798     year           = 1948,
799     title          = {The western intensification of wind-driven ocean currents},
800     journal        = {Trans. Am. Geophys. Union},
801     volume         = {29},
802     pages          = {206},
803                    }                    }
804    
805  @Article{tal-cou:87,  @Article{tal-cou:87,
806   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
807   year           = 1987,   year           = 1987,
808   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
809                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
810                    I: Theory},                    I: Theory},
811   journal        = qjrms,   journal        = qjrms,
812   volume         = {113},   volume         = {113},
813   pages          = {1311--1328},   pages          = {1311--1328},
814                    }                    }
815    
816  @Article{tal:97,  @Article{tal:97,
817   author         = {O. Talagrand},   author         = {O. Talagrand},
818   year           = 1997,   year           = 1997,
# Line 494  Line 821 
821   volume         = {75},   volume         = {75},
822   pages          = {191--209},   pages          = {191--209},
823                    }                    }
824    
825  @book{tar:87,  @book{tar:87,
826   author         = {A. Tarantola},   author         = {A. Tarantola},
827   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
828                    and model parameter estimation},                    and model parameter estimation},
829   year           = 1987,   year           = 1987,
830   publisher      = {Elsevier},   publisher      = {Elsevier},
831   address        = {Amsterdam},   address        = {Amsterdam},
832   pages          = {629 pp.},   pages          = {629 pp.},
833                    }                    }
834                                                                      
835  @techreport{tha:87,  @techreport{tha:87,
836   author         = {W.C. Thacker},   author         = {W.C. Thacker},
837   year           = 1987,   year           = 1987,
# Line 516  Line 843 
843   pages          = {64 pp.},   pages          = {64 pp.},
844   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
845                    }                    }
846    
847  @Article{tha-lon:88,  @Article{tha-lon:88,
848   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
849   year           = 1988,   year           = 1988,
# Line 525  Line 852 
852   volume         = {93, C2},   volume         = {93, C2},
853   pages          = {1,227--1,240},   pages          = {1,227--1,240},
854                    }                    }
855    
856  @Article{tha:88,  @Article{tha:88,
857   author         = {W.C. Thacker},   author         = {W.C. Thacker},
858   year           = 1988,   year           = 1988,
# Line 535  Line 862 
862   volume         = {93},   volume         = {93},
863   pages          = {10,655--10,665},   pages          = {10,655--10,665},
864                    }                    }
865    
866  @Article{tha:89,  @Article{tha:89,
867   author         = {W.C. Thacker},   author         = {W.C. Thacker},
868   year           = 1989,   year           = 1989,
# Line 545  Line 872 
872   volume         = {94, C5},   volume         = {94, C5},
873   pages          = {6,177--6,196},   pages          = {6,177--6,196},
874                    }                    }
875    
876  @Article{tha-rag:94,  @Article{tha-rag:94,
877   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
878   year           = 1994,   year           = 1994,
# Line 555  Line 882 
882   volume         = {99, C5},   volume         = {99, C5},
883   pages          = {10,131--10,141},   pages          = {10,131--10,141},
884                    }                    }
885    
886  @Article{tzi-tha:89,  @Article{tzi-tha:89,
887   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
888   year           = {1989},   year           = {1989},
# Line 565  Line 892 
892   volume         = {19},   volume         = {19},
893   pages          = {1471--1485},   pages          = {1471--1485},
894                    }                    }
895    
896  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
897   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
898                    S. Hwang},                    S. Hwang},
# Line 576  Line 903 
903   volume         = {22},   volume         = {22},
904   pages          = {1434--1457},   pages          = {1434--1457},
905                    }                    }
906    
907  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
908   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
909                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 587  Line 914 
914   volume         = {22},   volume         = {22},
915   pages          = {1458--1485},   pages          = {1458--1485},
916                    }                    }
917    
918  @book{wun:96,  @book{wun:96,
919   author         = {C. Wunsch},   author         = {C. Wunsch},
920   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
921   year           = 1996,   year           = 1996,
922   publisher      = cup,   publisher      = cup,
923   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
924   pages          = {442 pp.},   pages          = {442 pp.},
925                    }                    }
926                                                                      
927  @Article{zha-mar:99,  @Article{zha-mar:99,
928   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
929   year           = 1999,   year           = 1999,
# Line 626  Line 953 
953    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
954    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
955                   modeling},                   modeling},
956    journal =      {JGR},    journal =      jgr,
957    year =         1997,    year =         1997,
958    volume =       102,    volume =       102,
959    number =       {C3},    number =       {C3},
960    pages =        {5733-5752}    pages =        {5733-5752},
961      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
962  }  }
963    
964  @Article{marshall:97b,  @Article{marshall:97b,
965    author =       {Marshall, J., A. Adcroft, C. Hill, L. Perelman, and C. Heise},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
966    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
967                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
968    journal =      {JGR},    journal =      jgr,
969    year =         1997,    year =         1997,
970    volume =       102,    volume =       102,
971    number =       {C3},    number =       {C3},
972    pages =        {5753-5766}    pages =        {5753-5766},
973      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
974  }  }
975    
976  @Article{adcroft:97,  @Article{adcroft:97,
977    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
978    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
979                    coordinate ocean model},                    coordinate ocean model},
980    journal =      {MWR},    journal =      mwr,
981    year =         1997,    year =         1997,
982    volume =       125,    volume =       125,
983    pages =        {2293-2315}    pages =        {2293-2315},
984      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
985      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
986    }
987    
988    @Article{adcroft:04a,
989      author =       {Adcroft, A. and J.-M. Campin},
990      title =        {Re-scaled height coordinates for accurate representation
991                      of free-surface flows in ocean circulation models},
992      journal =      om,
993      year =         2004,
994      volume =       7,
995      pages =        {269-284},
996      doi   =        {10.1016/j.ocemod.2003.09.003},
997    }
998    
999    @Article{adcroft:04b,
1000      author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
1001      title =        {Implementation of an Atmosphere-Ocean General Circulation Model
1002                      on the Expanded Spherical Cube},
1003      journal =      mwr,
1004      year =         2004,
1005      volume =       132,
1006      pages =        {2845-2863},
1007      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
1008      doi     =      {10.1175/MWR2823.1},
1009    }
1010    
1011    @inproceedings{adcroft:04c,
1012      author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
1013                      and P. Heimbach},
1014      title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
1015      booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
1016                     Recent developments in numerical methods for atmosphere and
1017                     ocean modelling},
1018      year =         2004,
1019      pages =        {139-149},
1020      url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
1021     publisher =     ecmwf
1022    }
1023    
1024    @Article{marshall:04,
1025      author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
1026      title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
1027      journal =      mwr,
1028      year =         2004,
1029      volume =       132,
1030      pages =        {2882-2894},
1031      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
1032      doi    =       {10.1175/MWR2835.1},
1033  }  }
1034    
1035  @Article{visbeck:97,  @Article{visbeck:97,
1036    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
1037    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
1038                    coarse-resolution ocean circulation models},    journal =      jpo,
   journal =      {JPO},  
1039    year =         1997,    year =         1997,
1040    volume =       27,    volume =       27,
1041    number =       3,    number =       3,
# Line 678  Line 1055 
1055    pages =        {1-51}    pages =        {1-51}
1056  }  }
1057    
 @Article{marshall:98,  
   author =       {Marshall, J., Jones, H. and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
1058  @Article{mjn:99,  @Article{mjn:99,
1059    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
1060    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 711  Line 1079 
1079    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
1080    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
1081                    at both high and low resolutions},                    at both high and low resolutions},
1082    journal =      {MWR},    journal =      mwr,
1083    year =         1999,    year =         1999,
1084    volume =       127,    volume =       127,
1085    pages =        {1928-1936}    pages =        {1928-1936},
1086      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
1087      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1088  }  }
1089    
1090  @InProceedings{hill:99,  @InProceedings{hill:99,
1091    author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},    author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1092    title =        {A Strategy for Terascale Climate Modeling},    title =        {A Strategy for Terascale Climate Modeling},
1093    booktitle =    {In Proceedings of the Eight ECMWF Workshop on the Use of Parallel Processors in Meteorology},    booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1094    year =         1999    year =         1999,
1095      pages = {406-425},
1096      publisher =    {World Scientific},
1097  }  }
1098    
1099  @Article{wardle:00,  @Article{wardle:00,
1100    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
1101    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
1102    journal =      {JPO},    journal =      jpo,
1103    year =         2000,    year =         2000,
1104    volume =       30,    volume =       30,
1105    number =       10,    number =       10,
# Line 738  Line 1110 
1110    author =       {Adcroft, A. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
1111    title =        {Comparison of finite volume schemes and direct-space-time    title =        {Comparison of finite volume schemes and direct-space-time
1112                    methods for ocean circulation models},                    methods for ocean circulation models},
1113    journal =      {OM},    journal =      om,
1114    year =         2002,    year =         2002,
1115    note =         {in preparation}    note =         {in preparation}
1116  }  }
1117    
1118  @Article{adcroft:02,  @Article{adcroft:02,
1119    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
1120    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
1121    journal =      {OM},    journal =      om,
1122    year =         2002,    year =         2002,
1123    note =         {in preparation}    note =         {in preparation}
1124  }  }
# Line 762  Line 1134 
1134    volume =       17    volume =       17
1135  }  }
1136    
1137    @Article{miller_white:84,
1138      author =       {Miller, M. J. and White, A. A.},
1139      title =        {On the non-hydrostatic equations in pressure
1140                      and sigma coordiantes},
1141      journal =      qjrms,
1142      year =         1984,
1143      volume =       110,
1144      pages =        {515-533}
1145    }
1146    
1147    @Article{white:89,
1148      author =       {White, A. A.},
1149      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
1150      journal =      qjrms,
1151      year =         1989,
1152      volume =       115,
1153      pages =        {1243-1251}
1154    }
1155    
1156  @Article{adcroft:98,  @Article{adcroft:98,
1157    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1158    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 783  Line 1174 
1174    
1175  @Article{griffies:00,  @Article{griffies:00,
1176    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1177    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1178                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1179    journal =      {MWR},    journal =      mwr,
1180    year =         2000,    year =         2000,
1181    volume =       128,    volume =       128,
1182    number =       8,    number =       8,
# Line 796  Line 1187 
1187    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1188    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1189                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1190    journal =      {JCP},    journal =      jcp,
1191    year =         1993,    year =         1993,
1192    volume =       105,    volume =       105,
1193    number =       2,    number =       2,
# Line 804  Line 1195 
1195  }  }
1196    
1197  @Article{campin:02,  @Article{campin:02,
1198    author =       {Campin et al.},    author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1199    title =        {Conservation of properties in a free-surface model},    title =        {Conservation of properties in a free-surface model},
1200    journal =      {OM},    journal =      om,
1201    year =         2002,    year =         2004,
1202    note =         {in preparation}    volume =       6,
1203      pages =        {221-244}
1204    }
1205    
1206    @Article{Cox87,
1207      author =       {M. D. Cox},
1208      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1209      journal =      {Ocean modelling},
1210      year =         1987,
1211      volume =       74,
1212      pages =        {1-5 (Unpublished manuscript)}
1213    }
1214    
1215    @Article{gretal:98,
1216      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1217      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1218      journal =      jpo,
1219      year =         1998,
1220      volume =       28,
1221      pages =        {805-830}
1222    }
1223    
1224    @ARTICLE{gr:98,
1225      author =       {S. M. Griffies},
1226      title =        {The {Gent-McWilliams} Skew Flux},
1227      journal =      jpo,
1228      year =         1998,
1229      volume =       28,
1230      pages =        {831-841}
1231    }
1232    
1233    
1234    @Article{gkw:91,
1235      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1236      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1237      journal =      climd,
1238      year =         1991,
1239      volume =       5,
1240      number =       4,
1241      pages =        {211-226},
1242      doi   =        {10.1007/BF00210006}
1243  }  }
1244    
1245  @Article{dm:95,  @Article{dm:95,
1246    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {G. Danabasoglu and J. C. McWilliams},
1247    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1248    journal =      {JC},    journal =      jclim,
1249    year =         1995,    year =         1995,
1250    volume =       8,    volume =       8,
1251    number =       12,    number =       12,
1252    pages =        {2967-2987}    pages =        {2967-2987}
1253  }  }
1254    
 @Article{ldd:97,  
   author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},  
   title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},  
   journal =      {JPO},  
   year =         1997,  
   volume =       27,  
   number =       11,  
   pages =        {2418-2447}  
 }  
   
1255  @Article{gkw:99,  @Article{gkw:99,
1256    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1257    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
1258                    coarse-resolution numerical models},    journal =      jpo,
   journal =      {JPO},  
1259    year =         1999,    year =         1999,
1260    volume =       29,    volume =       29,
1261    number =       8,    number =       8,
1262    pages =        {1682-1700}    pages =        {1682-1700}
1263  }  }
1264    
1265  @Article{roe:85,  @incollection{roe:85,
1266    author =       {Roe, P.L.},   author         = {P.L. Roe},
1267    title =        {Some contributions to the modeling of discontinuous flows},   year           = 1985,
1268    journal =      {Lect. Notes Appl. Math.},   title          = {Some contributions to the modelling of discontinuous flows},
1269    year =         1985,   booktitle      = {Large-Scale Computations in Fluid Mechanics},
1270    volume =       22,   series         = {Lectures in Applied Mathematics},
1271    pages =        {163-193}   volume         = 22,
1272     pages          = {163-193},
1273     editor         = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1274     publisher      = {American Mathematical Society},
1275     address        = {Providence, RI},
1276    }
1277    
1278    @Article{trenberth90,
1279      author =       {K. M. Trenberth and J. Olson and W. G. Large},
1280      title =        {The Mean Annual Cycle in {G}lobal {O}cean Wind
1281                      Stress},
1282      journal =      jpo,
1283      year =         1990,
1284      volume =       20,
1285      pages =        {1742--1760}
1286    }
1287    
1288    @Article{molteni:03,
1289      author =       {F. Molteni},
1290      title =        {Atmospheric simulations using a {GCM} with simplified physical
1291                      parametrization, {I}: Model climatology and variability in
1292                      multidecadal experiments},
1293      journal =      climd,
1294      year =         2003,
1295      volume =       20,
1296      pages =        {175--191}
1297    }
1298    
1299    @Article{jiang99,
1300      author =       {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
1301      title =        {An Assessment of the {G}eophysical {F}luid
1302                      {D}ynamics {L}aboratory Ocean Model with Coarse
1303                      Resolution: Annual-Mean Climatology},
1304      journal =      jgr,
1305      year =         1999,
1306      volume =       104,
1307      number =       {C11},
1308      pages =        {25,623--25,645}
1309    }
1310    
1311    @Article{szoeke02,
1312      author =       {de Szoeke, Roland A. and Roger M. Samelson},
1313      title =        {The Duality between the {B}oussinesq and
1314                      {N}on-{B}oussinesq Hydrostatic Equations of Motion},
1315      journal =      jpo,
1316      year =         2002,
1317      volume =       32,
1318      number =       8,
1319      pages =        {2194--2203}
1320    }
1321    
1322    @Article{jackett95,
1323      author =       {David R. Jackett and Trevor J. McDougall},
1324      title =        {Minimal Adjustment of Hydrographic Profiles to
1325                      Achieve Static Stability},
1326      journal =      jaot,
1327      year =         1995,
1328      volume =       12,
1329      number =       4,
1330      pages =        {381--389}
1331    }
1332    
1333    @Article{mcdougall03,
1334      author =       {Trevor J. McDougall and David R. Jackett and Daniel
1335                      G. Wright and Rainer Feistel},
1336      title =        {Accurate and Computationally Efficient Algorithms
1337                      for Potential Temperature and Density of Seawater},
1338      journal =      jaot,
1339      year =         {2003},
1340      OPTkey =       {},
1341      OPTvolume =    {},
1342      OPTnumber =    {},
1343      OPTpages =     {},
1344      OPTmonth =     {},
1345      OPTnote =      {{\textup{In press}}},
1346      OPTannote =    {}
1347    }
1348    
1349    @TechReport{fofonoff83,
1350      author =       "Fofonoff, P. and Millard, Jr., R.C.",
1351      title =        "Algorithms for Computation of Fundamental Properties
1352                      of Seawater",
1353      institution =  "Unesco",
1354      year =         1983,
1355      type =         "Unesco Technical Papers in Marine Science",
1356      number =       44,
1357      pages =        {53 pp.}
1358    }
1359    
1360    @ARTICLE{zha98a,
1361      AUTHOR      = "J. Zhang and Hibler, III, W. D. and M. Steele
1362                     and D. A. Rothrock",
1363      TITLE       = "Arctic ice-ocean modeling with and without climate restoring",
1364      JOURNAL     = jpo,
1365      YEAR        = 1998,
1366      VOLUME      = 28,
1367      PAGES       = "191-217"
1368    }
1369    
1370    @ARTICLE{sem76,
1371      AUTHOR      = "Semtner, Jr., Albert J.",
1372      TITLE       = "A model for the thermodynamic growth of sea ice in
1373                     numerical investigations of climate",
1374      JOURNAL     = jpo,
1375      YEAR        = 1976,
1376      VOLUME      = 6,
1377      PAGES       = "379-389"
1378    }
1379    
1380    @ARTICLE{win00,
1381      AUTHOR      = "M. Winton",
1382      TITLE       = "A reformulated three-layer sea ice model",
1383      JOURNAL     = jaot,
1384      YEAR        = 2000,
1385      VOLUME      = 17,
1386      PAGES       = "525-531"
1387    }
1388    
1389    @ARTICLE{hib79,
1390      author =       {Hibler, III, W. D.},
1391      TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1392      JOURNAL     = jpo,
1393      YEAR        = 1979,
1394      VOLUME      = 9,
1395      PAGES       = "815-846"
1396    }
1397    
1398    @ARTICLE{fla92,
1399      AUTHOR      = "G. M. Flato and Hibler, III, W. D.",
1400      TITLE       = "Modeling pack ice as a cavitating fluid",
1401      JOURNAL     = jpo,
1402      YEAR        = 1992,
1403      VOLUME      = 22,
1404      PAGES       = "626-651"
1405    }
1406    
1407    @ARTICLE{hun97,
1408      AUTHOR      = "E. C. Hunke and J. K. Dukowicz",
1409      TITLE       = "An elastic-viscous-plastic model for sea ice dynamics",
1410      JOURNAL     = jpo,
1411      YEAR        = 1997,
1412      VOLUME      = 27,
1413      PAGES       = "1849--1867"
1414    }
1415    
1416    @Article{hun01,
1417      author =       {Elizabeth C. Hunke},
1418      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1419                      Model: Linearization Issues},
1420      journal =      jcp,
1421      year =         2001,
1422      volume =       170,
1423      pages =        {18--38},
1424      doi =          {10.1006/jcph.2001.6710}
1425    }
1426    
1427    @ARTICLE{zha00,
1428      AUTHOR      = "Jinlun Zhang and Drew Rothrock",
1429      TITLE       = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1430      JOURNAL     = jgr,
1431      YEAR        = 2000,
1432      VOLUME      = 105,
1433      PAGES       = "3325--3338"
1434    }
1435    
1436    @Article{Shapiro_70,
1437      author =       {Shapiro, R.},
1438      title =        {Smoothing, filtering, and boundary effects},
1439      journal =      {Reviews of Geophysics and Space Physics},
1440      year =         {1970},
1441      volume =       {8},
1442      number =       {2},
1443      pages =        {359--387},
1444    }
1445    
1446    @TechReport{Dutkiewicz_etal_05,
1447      author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1448      title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1449                      its Coupling to a Two-Dimensional Atmospheric Model: Uses
1450                      in Climate Change Studies, Report 122},
1451      institution =  {MIT Joint Program of the Science and Policy of Global Change},
1452      year =         {2005},
1453      OPTnumber =    {122},
1454      address =      {Cambridge, MA},
1455      note =         {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1456    }
1457    
1458    @Article{Follows_etal_05,
1459      author =       {M. Follows and T. Ito and S. Dutkiewicz},
1460      title =        {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1461                      Biogeochemistry Models},
1462      journal =      {Ocean Modeling},
1463      year =         {{in press}},
1464      OPTkey =       {},
1465      OPTvolume =    {},
1466      OPTnumber =    {},
1467      OPTpages =     {},
1468    }
1469    
1470    @Article{McKinley_etal_04,
1471      author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1472      title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1473                      Equatorial Pacific and the North Atlantic},
1474      journal =      {Global Biogeochemical Cycles},
1475      year =         {2004},
1476      OPTkey =       {},
1477      volume =       {18},
1478      number =       {doi:10.1029/2003GB002179},
1479      OPTpages =     {},
1480    }
1481    
1482    @TechReport{Trenberth_etal_89,
1483      author =       {K. Trenberth and J. Olson and W. Large},
1484      title =        {A global wind stress climatology based on ECMWF analyses},
1485      institution =  {NCAR},
1486      year =         {1989},
1487      OPTkey =       {},
1488      OPTtype =      {},
1489      number =       {NCAR/TN-338+STR},
1490      address =      {Boulder, CO},
1491      OPTmonth =     {},
1492    }
1493    
1494    @Article{Wanninkhof_92,
1495      author =       {R. Wanninkhof},
1496      title =        {Relationship between wind speed and gas exchange over the ocean},
1497      journal =      jgr,
1498      year =         {1992},
1499      OPTkey =       {},
1500      volume =       {97},
1501      OPTnumber =    {},
1502      pages =        {7373--7382},
1503      OPTmonth =     {},
1504    }
1505    
1506    @incollection{black:77,
1507     author       = {A. K. Blackadar},
1508     year         = {1977},
1509     title        = {High Resolution Models of the Planetary Boundary Layer.},
1510     booktitle    = {Advances in Environmental Science and Engineering, Vol 1 } ,
1511     editor       = {Pfafflin and Zeigler},
1512     publisher    = {Gordon and Breach, Scientific Publishers}
1513    }
1514    
1515    @Article{chou:92,
1516     author       = {M-D. Chou},
1517     year         = {1992},
1518     title        = {A solar radiation model for use in climate studies.},
1519     journal      = jas,
1520     volume       = {49},
1521     pages        = {762-772}
1522    }
1523    
1524    @Article{chou:90,
1525     author       = {M-D. Chou},
1526     year         = {1990},
1527     title        = {Parameterizations for the absorption of solar radiation
1528                       by O$_2$ and CO$_2$ with applications to climate studies.},
1529     journal      = jclim,
1530     volume       = {3},
1531     pages        = {209-217}
1532    }
1533    
1534    @techreport{chsz:94,
1535     author       = {M.-D. Chou and M.J.Suarez},
1536     year         = {1994},
1537     title        = {An efficient thermal infrared radiation parameterization
1538    for use in general circulation models},
1539     institution  = {National Aeronautics and Space Administration},
1540     type         = {NASA Technical Memorandum},
1541     number       = {104606-Vol 3},
1542     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1543     note         = {http://www.gmao.nasa.gov/}
1544    }
1545    
1546    @Article{clarke:70,
1547     author       = {R. H. Clarke},
1548     year         = {1970},
1549     title        = {Observational studies in the atmospheric boundary layer.},
1550     journal      = qjrms,
1551     volume       = {96},
1552     pages        = {91-114}
1553    }
1554    
1555    @Article{deftow:94,
1556     author       = { R. S. Defries and J. R. G. Townshend},
1557     year         = {1994},
1558     title        = {NDVI-derived Land Cover Classification at Global Scales. },
1559     journal      = {Int'l J. Rem. Sens.} ,
1560     volume       = {15},
1561     pages        = {3567-3586}
1562    }
1563    
1564    @Article{dorsell:89,
1565     author       = { J. L. Dorman and P. J. Sellers},
1566     year         = {1989},
1567     title        = {A global climatology of albedo, roughness length and stomatal
1568    resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1569     journal      = jam,
1570     volume       = {28},
1571     pages        = {833-855}
1572    }
1573    
1574    @Article{helflab:88,
1575     author       = { H. M. Helfand and J. C. Labraga},
1576     year         = {1988},
1577     title        = { Design of a non-singular level 2.5 second-order closure
1578    model for the prediction of atmospheric turbulence. },
1579     journal      = jas,
1580     volume       = {45},
1581     pages        = {113-132}
1582    }
1583    
1584    @inproceedings{helfetal:91,
1585     author       = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1586     year         = {1991},
1587     title        = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1588     booktitle    = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1589     year         = 1991,
1590     pages        = {406-425},
1591     publisher    = {American Meteorological Society}
1592    }
1593    
1594    @Article{helfschu:95,
1595     author       = {H. M. Helfand and S. D. Schubert},
1596     year         = {1995},
1597     title        = { Climatology of the
1598    Simulated Great Plains Low-Level Jet and Its contribution to the
1599    Continental Moisture Budget of the United States. },
1600     journal      = jclim,
1601     volume       = {8},
1602     pages        = {784-806}
1603    }
1604    
1605    @Article{kondo:75,
1606     author       = {J. Kondo},
1607     year         = {1975},
1608     title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
1609     journal      = blm,
1610     volume       = {9},
1611     pages        = {91-112}
1612    }
1613    
1614    @techreport{ks:91,
1615     author       = { Randal D. Koster and Max J. Suarez},
1616     year         = {1991},
1617     title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1618     institution  = {National Aeronautics and Space Administration},
1619     type         = {NASA Technical Memorandum},
1620     number       = {104538},
1621     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1622     note         = {http://www.gmao.nasa.gov/},
1623    }
1624    
1625    @Article{ks:92,
1626     author       = { Randal D. Koster and Max J. Suarez},
1627     year         = {1992},
1628     title        = { Modeling the Land Surface Boundary
1629    in Climate Models as a Composite of Independent Vegetation Stands.},
1630     journal      = jgr,
1631     volume       = {97},
1632     pages        = {2697-2715}
1633    }
1634    
1635    @Article{lhans:74,
1636     author       = {A. A. Lacis and J. E. Hansen},
1637     year         = {1974},
1638     title        = { A parameterization for the absorption of solar radiation
1639    in the Earth's atmosphere.  },
1640     journal      = jas,
1641     volume       = {31},
1642     pages        = {118-133}
1643    }
1644    
1645    @Article{larpond:81,
1646     author       = {W. G. Large and S. Pond},
1647     year         = {1981},
1648     title        = {Open ocean momentum flux measurements in moderate to strong winds.},
1649     journal      = jpo,
1650     volume       = {11},
1651     pages        = {324-336}
1652    }
1653    
1654    @Article{moorsz:92,
1655     author       = {S. Moorthi and M. J. Suarez},
1656     year         = {1992},
1657     title        = {  Relaxed Arakawa Schubert: A parameterization of moist
1658    convection for general circulation models.},
1659     journal      = mwr,
1660     volume       = {120},
1661     pages        = {978-1002}
1662    }
1663    
1664    @incollection{pano:73,
1665     author       = {H. A. Panofsky},
1666     year         = {1973},
1667     title        = {Tower Micrometeorology. },
1668     booktitle    = {Workshop on Micrometeorology},
1669     editor       = {D. A. Haugen},
1670     publisher    = {American Meteorological Society}
1671    }
1672    
1673    @Article{reynetal:94,
1674     author       = {R. W. Reynolds and T. M. Smith},
1675     year         = {1994},
1676     title        = {Improved global sea surface temperature analyses using optimum interpolation.},
1677     journal      = jclim,
1678     volume       = {7},
1679     pages        = {929-948}
1680    }
1681    
1682    @Article{rosen:87,
1683     author       = {J. E. Rosenfield and M. R. Schoeberl and M. A. Geller},
1684     year         = {1987},
1685     title        = {  A computation of the stratospheric
1686    diabatic circulation using an accurate radiative transfer model},
1687     journal      = jas,
1688     volume       = {44},
1689     pages        = {859-876}
1690    }
1691    
1692    @Article{sudm:88,
1693     author       = {Y. C. Sud and A. Molod},
1694     year         = {1988},
1695     title        = {  The roles of dry convection, cloud-radiation feedback processes
1696    and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1697     journal      = mwr,
1698     volume       = {116},
1699     pages        = {2366-2387}
1700    }
1701    
1702    @techreport{taksz:96,
1703     author       = {L. L. Takacs and M.J. Suarez},
1704     year         = {1996},
1705     title        = {  Dynamical aspects of climate simulations Using the GEOS
1706    General Circulation Model},
1707     institution  = {National Aeronautics and Space Administration},
1708     type         = {NASA Technical Memorandum},
1709     number       = {104606 Volume 10},
1710     address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1711     note         = {http://www.gmao.nasa.gov/},
1712    }
1713    
1714    @Article{yagkad:74,
1715     author       = {A. M. Yaglom and B. A. Kader},
1716     year         = {1974},
1717     title        = {Heat and mass transfer between a rough wall and
1718    turbulent fluid flow at high Reynolds and Peclet numbers.  },
1719     journal      = jfm,
1720     volume       = {62},
1721     pages        = {601-623}
1722    }
1723    
1724    @Article{yam:77,
1725     author       = {T. Yamada},
1726     year         = {1977},
1727     title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1728    atmospheric boundary layer.},
1729     journal      = {Atmos. Environ.},
1730     volume       = {11},
1731     pages        = {1015-1024}
1732    }
1733    
1734    @Article{zhouetal:95,
1735     author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1736     year         = {1995},
1737     title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1738     journal      = qjrms,
1739     volume       = {122},
1740     pages        = {903-927}
1741    }
1742    
1743    @Article{breth:99,
1744     author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1745                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1746                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1747                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1748     year           = 1999,
1749     title          = {An intercomparison of radiatively driven entrainment and turbulence
1750                      in a smoke cloud, as simulated by different numerical models.},
1751     journal        = qjrms,
1752     volume         = {125},
1753     pages          = {391-423}
1754                      }
1755    
1756    @Article{bm:99,
1757     author         = {A. C. Bushell and G.M. Martin},
1758     year           = 1999,
1759     title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1760     journal        = {Climate Dyn.},
1761     volume         = {15},
1762     pages          = {293-318}
1763                      }
1764    
1765    @Article{Inn:01,
1766     author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1767     year           = 2001,
1768     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1769                      Implications for the Simulation of the Madden-Julian Oscillation.},
1770     journal        = {Climate Dyn.},
1771     volume         = {17},
1772     pages          = {777-794}
1773                      }
1774    
1775    @Article{kal:89,
1776     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1777                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1778     year           = 1989,
1779     title          = {Rules for Interchange of Physical Parameterizations.},
1780     journal        = bams,
1781     volume         = {70},
1782     pages          = {620-622}
1783                      }
1784    
1785    @Article{wo:98,
1786     author         = {D. Williamson and J.G. Olsen},
1787     year           = 1998,
1788     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1789     journal        = mwr,
1790     volume         = {126},
1791     pages          = {991-1000}
1792                      }
1793    
1794    @TechReport{MPI-std-20,
1795      author =       {{Message Passing Interface Forum}},
1796      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1797      institution =  {mpi-forum.org},
1798      year =         {1998},
1799    }
1800    
1801    @Article{cam08,
1802      author =       {Jean-Michel Campin and John Marshall and David
1803                      Ferreira},
1804      title =        {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1805                      Coordinate z$^\ast$},
1806      journal =      om,
1807      volume =       24,
1808      number =       {1--2},
1809      pages =        {1--14},
1810      doi =          {10.1016/j.ocemod.2008.05.005},
1811      year =         2008
1812    }
1813    
1814    @Article{geiger98,
1815      author =       {Cathleen A. Geiger and Hibler, III, William D. and
1816                      Stephen F. Ackley},
1817      title =        {Large-Scale Sea Ice Drift and Deformation:
1818                      {C}omparison between Models and Observations in the
1819                      Western {W}eddell {S}ea during 1992},
1820      journal =      jgr,
1821      year =         1998,
1822      volume =       103,
1823      number =       {C10},
1824      pages =        {21893--21913}
1825    }
1826    
1827    @InCollection{hibler84,
1828      author =       {Hibler, III, William D.},
1829      title =        {The role of sea ice dynamics in modeling CO{$_2$}
1830                      increases},
1831      booktitle =    {Climate processes and climate sensitivity},
1832      pages =        {238--253},
1833      publisher =    {AGU},
1834      year =         1984,
1835      editor =       {J. E. Hansen and T. Takahashi},
1836      volume =       29,
1837      series =       {Geophysical Monograph},
1838      address =      {Washington, D.C.}
1839    }
1840    
1841    @Article{hibler87,
1842      author =       {Hibler, III, William D. and Kirk Bryan},
1843      title =        {A Diagnostic Ice-Ocean Model},
1844      journal =      jpo,
1845      year =         1987,
1846      volume =       17,
1847      number =       7,
1848      pages =        {987--1015}
1849    }
1850    
1851    @InCollection{hibler95,
1852      author =       {Hibler, III, William D. and Chi F. Ip},
1853      title =        {The effect of sea ice rheology on {A}rcitc buoy
1854                      drift},
1855      booktitle =    {Ice Mechanics},
1856      pages =        {255--264},
1857      publisher =    {Am. Soc. of Mech. Eng.},
1858      year =         1995,
1859      editor =       {John P. Dempsey and Y. D. S. Rajapakse},
1860      volume =       204,
1861      series =       {AMD},
1862      address =      {New York}
1863    }
1864    
1865    @Article{hibler97,
1866      author =       {Hibler, III, William D. and Erland M. Schulson},
1867      title =        {On Modeling Sea-Ice Fracture and Flow in Numerical
1868                      Investigations of Climate},
1869      journal =      angl,
1870      year =         1997,
1871      volume =       25,
1872      pages =        {26--32}
1873    }
1874    
1875    @Article{hundsdorfer94,
1876      author =       {Willem Hundsdorfer and R. A. Trompert},
1877      title =        {Method of Lines and Direct Discretization: a
1878                      Comparison for Linear Advection},
1879      journal =      {Applied Numerical Mathematics},
1880      year =         1994,
1881      volume =       13,
1882      number =       6,
1883      pages =        {469--490},
1884      doi =          {10.1016/0168-9274(94)90009-4}
1885    }
1886    
1887    @Article{leppaeranta83,
1888      author =       {Matti Lepp{\"a}ranta},
1889      title =        {A Growth Model for Black Ice, Snow Ican and Snow
1890                      Thickness in Subarctic Basins},
1891      journal =      {Nordic Hydrology},
1892      year =         1983,
1893      volume =       14,
1894      pages =        {59--70}
1895    }
1896    
1897    @Article{manabe79,
1898      author =       {S. Manabe and Kirk Bryan and M. J. Spelman},
1899      title =        {A Global Ocean-Atmosphere Climate Model with Seasonal
1900                      Variation for Future Studies of Climate Sensitivity},
1901      journal =      dao,
1902      year =         1979,
1903      volume =       3,
1904      number =       {393--426}
1905    }
1906    
1907    @Article{menemenlis05,
1908      author =       {D. Menemenlis and C. Hill and A. Adcroft and
1909                      J.-M. Campin and B. Cheng and B. Ciotti and
1910                      I. Fukumori and A. Koehl and P. Heimbach and
1911                      C. Henze and T. Lee and D. Stammer and J. Taft and
1912                      J. Zhang},
1913      title =        {{NASA} Supercomputer Improves Prospects for Ocean
1914                      Climate Research},
1915      journal =      eos,
1916      year =         2005,
1917      volume =       86,
1918      number =       9,
1919      pages =        {89, 95--96}
1920    }
1921    
1922    @Article{parkinson79,
1923      author =       {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1924      title =        "{A Large-Scale Numerical Model of Sea Ice}",
1925      journal =      jgr,
1926      year =         1979,
1927      month =        jan,
1928      volume =       84,
1929      number =       {C1},
1930      pages =        {311--337},
1931      adsurl =       {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1932      adsnote =      {Provided by the Smithsonian/NASA Astrophysics Data
1933                      System}
1934    }
1935    
1936    @Article{semtner84,
1937      author =       {Semtner, Jr., Albert J.},
1938      title =        {On Modelling the Seasonal Thermodynamic Cycle of Sea
1939                      Ice in Studies of Climatic Change},
1940      journal =      cch,
1941      year =         1984,
1942      volume =       6,
1943      number =       1,
1944      pages =        {27--37}
1945    }
1946    
1947    @Article{zhang97,
1948      author =       {Jinlun Zhang and Hibler, III, William D.},
1949      title =        {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
1950      journal =      jgr,
1951      year =         1997,
1952      volume =       102,
1953      number =       {C4},
1954      pages =        {8691--8702}
1955    }
1956    
1957    @Article{zhang03,
1958      author =       {Jinlun Zhang and Drew A. Rothrock},
1959      title =        {Modeling Global Sea Ice with a Thickness and
1960                      Enthalpy Distribution Model in Generalized
1961                      Curvilinear Coordinates},
1962      journal =      mwr,
1963      year =         2003,
1964      volume =       131,
1965      number =       5,
1966      pages =        {845--861}
1967    }
1968    
1969    @Article{beckmann99,
1970      author =       {Aike Beckmann and Hartmut H. Hellmer and Ralph
1971                      Timmermann},
1972      title =        {A Numerical Model of the {W}eddell {S}ea:
1973                      Large-Scale Circulation and Water Mass Distribution},
1974      journal =      jgr,
1975      year =         1999,
1976      volume =       104,
1977      number =       {C10},
1978      pages =        {23,375--23,392}
1979    }
1980    
1981    @Article{grosfeld97,
1982      author =       {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1983                      Determann},
1984      title =        {Thermohaline Circulation and Interaction between Ice
1985                      Shelf Cavities and the Adjacent Open Water},
1986      journal =      jgr,
1987      year =         1997,
1988      volume =       102,
1989      number =       {C7},
1990      pages =        {15,595--15,610}
1991    }
1992    
1993    @Article{hellmer89,
1994      author =       {Hartmut H. Hellmer and Dirk J. Olbers},
1995      title =        {A Two-Dimensional Model of the Thermohaline
1996                      Circulation Under an Ice Shelf},
1997      journal =      {Antarct. Sci.},
1998      year =         1989,
1999      volume =       1,
2000      pages =        {325--336}
2001    }
2002    
2003    @Article{holland99,
2004      author =       {David M. Holland and Adrian Jenkins},
2005      title =        {Modeling Thermodynamic Ice-Ocean Interactions at the
2006                      Base of an Ice Shelf},
2007      journal =      jpo,
2008      year =         1999,
2009      volume =       29,
2010      number =       8,
2011      pages =        {1787--1800}
2012    }
2013    
2014    @Article{hutchings04,
2015      author =       {Jennifer K. Hutchings and Hrvoje Jasak and Seymour
2016                      W. Laxon},
2017      title =        {A Strength Implicit Correction Scheme for the
2018                      Viscous-Plastic Sea Ice Model},
2019      journal =      om,
2020      year =         2004,
2021      volume =       7,
2022      number =       {1--2},
2023      pages =        {111-133},
2024      doi =          {10.1016/S1463-5003(03)00040-4}
2025    }
2026    
2027    @Article{jenkins01,
2028      author =       {Adrian Jenkins and Hartmut H. Hellmer and David
2029                      M. Holland},
2030      title =        {The Role of Meltwater Advection in the Formulation
2031                      of Conservative Boundary Conditions at an Ice-Ocean
2032                      Interface},
2033      journal =      jpo,
2034      year =         2001,
2035      volume =       31,
2036      pages =        {285--296}}
2037    
2038    @Article{kalnay96,
2039      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
2040                      W. Collins and D. Deaven and L. Gandin and
2041                      M. Iredell and S. Saha and G. White and J. Woollen
2042                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
2043                      W. Higgins and J. Janowiak and K. C. Mo and
2044                      C. Ropelewski and J. Wang and A. Leetmaa and
2045                      R. Reynolds and R. Jenne and D. Joseph},
2046      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
2047      journal =      bams,
2048      year =         1996,
2049      volume =       77,
2050      pages =        {437--471}
2051    }
2052    
2053    @Article{kimmritz15,
2054      author =       {Madlen Kimmritz and Sergey Danilov and Martin Losch},
2055      title =        {On the Convergence of the Modified
2056                      Elastic-Viscous-Plastic Method of Solving for
2057                      Sea-Ice Dynamics},
2058      journal =      jcp,
2059      year =         2015,
2060      volume =       296,
2061      pages =        {90--100},
2062      doi =          {10.1016/j.jcp.2015.04.051}}
2063    
2064    @Article{kimmritz16,
2065      author =       {Madlen Kimmritz and Sergey Danilov and Martin Losch},
2066      title =        {The Adaptive {EVP} Method for Solving the Sea Ice Momentum Equation},
2067      journal =      om,
2068      year =         2016,
2069      url =          {http://mitgcm.org/~mlosch/adaptiveEVP_accepted.pdf},
2070      OPTvolume =    {},
2071      OPTnumber =    {},
2072      OPTpages =     {},
2073      OPTmonth =     {},
2074      OPTnote =      {},
2075      OPTannote =    {},
2076      OPTdoi =       {}}
2077    
2078    @Article{klymaklegg10,
2079      author =       {Klymak, Jody M. and Sonya M. Legg},
2080      title =        {A simple mixing scheme for models that resolve
2081                      breaking internal waves},
2082      journal =      om,
2083      year =         2010,
2084      volume =       33,
2085      pages =        {224--234},
2086      doi =          {10.1016/j.ocemod.2010.02.005}
2087    }
2088    
2089    @Article{losch08,
2090      author =       {Martin Losch},
2091      title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
2092                      General Circulation Model},
2093      journal =      jgr,
2094      year =         2008,
2095      volume =       113,
2096      number =       {C08043},
2097      doi =          {10.1029/2007JC004368}
2098    }
2099    
2100    @Article{losch10:_mitsim,
2101      author =       {Losch, Martin and Menemenlis, Dimitris and Campin,
2102                      Jean-Michel and Heimbach, Patrick and Hill, Chris},
2103      title =        {On the formulation of sea-ice models. {P}art 1:
2104                      Effects of different solver implementations and
2105                      parameterizations},
2106      journal =      om,
2107      year =         2010,
2108      volume =       33,
2109      number =       {1--2},
2110      pages =        {129--144},
2111      doi =          {10.1016/j.ocemod.2009.12.008}
2112    }
2113    
2114    @Article{losch14:_jfnk,
2115      author =       {Martin Losch and Annika Fuchs and
2116                      Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
2117      title =        {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
2118                      for a Coupled Sea Ice-Ocean Model },
2119      journal =      jcp,
2120      volume =       {257},
2121      number =       {A},
2122      pages =        {901--910},
2123      year =         {2014},
2124      doi =          {10.1016/j.jcp.2013.09.026}
2125    }
2126    
2127    @Article{lemieux09,
2128      author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay},
2129      title =        {Numerical Convergence of Viscous-Plastic Sea Ice
2130                      Models},
2131      journal =      jgr,
2132      year =         2009,
2133      volume =       114,
2134      number =       {C05009},
2135      doi =          {10.1029/2008JC005017}}
2136    
2137    @Article{lemieux10,
2138      author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay and Jan
2139                      Sedl{\'a}{\v{c}}ek and Paul Tupper and Stephen
2140                      Thomas and David Huard and Jean-Pierre Auclair},
2141      title =        {Improving the Numerical Convergence of
2142                      Viscous-Plastic Sea Ice Models with the
2143                      {J}acobian-Free {N}ewton-{K}rylov Method},
2144      journal =      jcp,
2145      year =         2010,
2146      volume =       229,
2147      pages =        {2840--2852},
2148      doi =          {10.1016/j.jcp.2009.12.011c}}
2149    
2150    @Article{lemieux12,
2151      author =       {Jean-Fran{\c{c}}ois Lemieux and Dana Knoll and Bruno
2152                      Tremblay and David M. Holland and Martin Losch},
2153      title =        {A Comparison of the {J}acobian-free
2154                      {N}ewton-{K}rylov Method and the {EVP} Model for
2155                      Solving the Sea Ice Momentum Equation with a
2156                      Viscous-Plastic Formulation: a Serial Algorithm
2157                      Study},
2158      journal =      jcp,
2159      year =         2012,
2160      volume =       231,
2161      number =       17,
2162      pages =        {5926--5944},
2163      doi =          {10.1016/j.jcp.2012.05.024}}
2164    
2165    @article{knoll04:_jfnk,
2166      Author =       {D.A. Knoll and D.E. Keyes},
2167      Title =        {{J}acobian-free {N}ewton-{K}rylov Methods: a Survey
2168                      of Approaches and Applications},
2169      Journal =      jcp,
2170      Year =         2004,
2171      Volume =       193,
2172      Pages =        {357--397},
2173      doi =          {10.1016/j.jcp.2003.08.010},
2174    }
2175    
2176    @Article{saad93:_fgmres,
2177      author =       {Y. Saad},
2178      title =        {A Flexible Inner-Outer Preconditioned {GMRES}
2179                      Method},
2180      journal =      siscicom,
2181      year =         1993,
2182      volume =       14,
2183      number =       2,
2184      pages =        {461--469}}
2185    
2186    @Article{Dutay02,
2187     author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
2188        and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
2189        and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
2190        and G. Madec and E. Maier-Reimer and J.C. Marshall and R.J. Matear and P. Monfray
2191        and A. Mouchet and G.-K. Plattner and J. sarmiento and R. Schlitzer and R. Slater
2192        and I.J. Totterdell and M.-F. Weirig and Y. Yammanaka and A. Yool},
2193     year           = 2002,
2194     title          = {Evaluation of ocean model ventilation with CFC-11:
2195                       comparison of 13 global ocean models},
2196     journal        = om,
2197     volume         = {4},          number= {},             month   = {},
2198     pages          = {89-120}
2199                    }
2200    
2201    @Article{marsh06,
2202     author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
2203     year           = 2006,
2204     title          = {Estimates and Implications of Surface Eddy Diffusivity
2205                       in the Southern Ocean Derived from Tracer Transport},
2206     journal        = jpo,
2207     volume         = {36},          number= {},             month   = {},
2208     pages          = {1806-1821}
2209                    }
2210    
2211    @InProceedings{hoe-hill:99,
2212      author =       {Hoe, James C. and Chris Hill and Alistair Adcroft},
2213      title =        {A Personal Supercomputer for Climate Research},
2214      booktitle =    {In Proceedings of the ACM/IEEE Super-Computing Confrence},
2215      year =         1999,
2216      pages = {10.1109/SC.1999},
2217      publisher =    {IEEE},
2218    }
2219    
2220    @Article{stevens:90,
2221      author =       {Stevens, D. P.},
2222      title =        {On Open Boundary Conditions for Three Dimensional
2223                      Primitive Equation Ocean Circulation Models},
2224      journal =      {Geophys. Astrophys. Fl. Dyn.},
2225      year =         1990,
2226      volume =       51,
2227      pages =        {103--133}
2228    }
2229    
2230    
2231    @Article{moum96,
2232      author        = {Moum, J.N.},
2233      title         = {Energy-containing scales of turbulence in the ocean thermocline},
2234      journal       = jgr,
2235      year          = 1996,
2236      volume        = {101 (C3)},
2237      pages         = {14095--14109}
2238    }
2239    
2240    @Article{seimgregg94,
2241      author        = {Seim, Harvey E. and Michael C. Gregg},
2242      title         = {Detailed observations of a naturally occurring shear instability},
2243      journal       = jgr,
2244      year          = 1994,
2245      volume        = {99 (C5)},
2246      pages         = {10049--10073},
2247    }
2248    
2249    @Article{thorpe77,
2250      author        = {Thorpe, S.A.},
2251      title         = {Turbulence and mixing in a Scottish loch},
2252      journal       = ptrsl,
2253      year          = 1977,
2254      volume        = {286},
2255      pages         = {125--181}
2256    }
2257    
2258    @Article{wesson94,
2259      author        = {Wesson, J. C. and  Michael C. Gregg},
2260      title         = {Mixing at Camarinal Sill in the Strait of Gibraltar},
2261      journal       = jgr,
2262      year          = 1994,
2263      volume        = {99 (C5)},
2264      pages         = { 9847--9878}
2265  }  }
2266    
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