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revision 1.22 by molod, Tue Aug 2 15:42:38 2005 UTC revision 1.29 by cnh, Wed Jun 28 22:16:26 2006 UTC
# Line 5  Line 5 
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
8    @string{jam     = {J.~Appl.~Meteor.}}
9  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
10  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
11    @string{jcp     = {J.~Comput.~Phys.}}
12  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
13  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
14  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
# Line 69  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 116  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{dutk-etal:06,
135      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
136      title = {Controls on ocean productivity and air-sea carbon flux:
137               An adjoint model sensitivity study},
138      journal = grl,
139      year = {2006},
140      volume = {33},
141      pages  = {L02603},
142      doi    = {10.1029/2005GL024987},
143    }
144    
145  @Article{err:97,  @Article{err:97,
146   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 452  Line 477 
477   pages          = {38 pp.},   pages          = {38 pp.},
478   address        = {Delft (NL)},   address        = {Delft (NL)},
479                    }                    }
480    
481    @ARTICLE{losc-heim:06,
482      author = {M. Losch and P. Heimbach},
483      title = {Adjoint sensitivity of an ocean general circulation model
484               to bottom topography},
485      journal = jpo,
486      year = {2006},
487      volume = {{in press}},
488      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
489    }
490    
491    
492  @Article{maro-wun:93,  @Article{maro-wun:93,
493   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 506  Line 542 
542   journal        = jms,   journal        = jms,
543   volume         = {18},   volume         = {18},
544   pages          = {115--134},   pages          = {115--134},
545     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
546     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
547                    }                    }
548    
549  @Article{mcw:96,  @Article{mcw:96,
# Line 581  Line 619 
619   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
620   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
621   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
622     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
623                    }                    }
624    
625  @techreport{sta-eta:97,  @techreport{sta-eta:97,
# Line 599  Line 638 
638   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
639                    }                    }
640    
641  @Article{sta-eta:01,  @ARTICLE{stam-eta:01,
642   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
643                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
644                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
645   year           = 2001,    year = {2002a},
646   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
647                    estimated from ocean observations and a general    pages = {3118},
648                    circulation model},    doi   = {10.1029/2001JC000888},
649   journal        = jgr,  }
650   note           = {in press},  
                   }  
651    
652  @Article{Stommel66,  @Article{Stommel66,
653   author         = {H. Stommel},   author         = {H. Stommel},
# Line 771  Line 809 
809    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
810    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
811                   modeling},                   modeling},
812    journal =      {JGR},    journal =      jgr,
813    year =         1997,    year =         1997,
814    volume =       102,    volume =       102,
815    number =       {C3},    number =       {C3},
816    pages =        {5733-5752}    pages =        {5733-5752},
817      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
818  }  }
819    
820  @Article{marshall:97b,  @Article{marshall:97b,
821    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
822    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
823                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
824    journal =      {JGR},    journal =      jgr,
825    year =         1997,    year =         1997,
826    volume =       102,    volume =       102,
827    number =       {C3},    number =       {C3},
828    pages =        {5753-5766}    pages =        {5753-5766},
829      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
830  }  }
831    
832  @Article{adcroft:97,  @Article{adcroft:97,
833    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
834    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
835                    coordinate ocean model},                    coordinate ocean model},
836    journal =      {MWR},    journal =      mwr,
837    year =         1997,    year =         1997,
838    volume =       125,    volume =       125,
839    pages =        {2293-2315}    pages =        {2293-2315},
840      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
841      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
842  }  }
843    
844  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 806  Line 848 
848    journal =      om,    journal =      om,
849    year =         2004,    year =         2004,
850    volume =       7,    volume =       7,
851    pages =        {269-284}    pages =        {269-284},
852      doi   =        {10.1016/j.ocemod.2003.09.003},
853  }  }
854    
855  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 816  Line 859 
859    journal =      mwr,    journal =      mwr,
860    year =         2004,    year =         2004,
861    volume =       132,    volume =       132,
862    pages =        {2845-2863}    pages =        {2845-2863},
863      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
864      doi     =      {10.1175/MWR2823.1},
865  }  }
866    
867  @Article{marshall:04,  @Article{marshall:04,
# Line 825  Line 870 
870    journal =      mwr,    journal =      mwr,
871    year =         2004,    year =         2004,
872    volume =       132,    volume =       132,
873    pages =        {2882-2894}    pages =        {2882-2894},
874      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
875      doi    =       {10.1175/MWR2835.1},
876  }  }
877    
878  @Article{visbeck:97,  @Article{visbeck:97,
879    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
880    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
881                    coarse-resolution ocean circulation models},                    coarse-resolution ocean circulation models},
882    journal =      {JPO},    journal =      jpo,
883    year =         1997,    year =         1997,
884    volume =       27,    volume =       27,
885    number =       3,    number =       3,
# Line 852  Line 899 
899    pages =        {1-51}    pages =        {1-51}
900  }  }
901    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
902  @Article{mjn:99,  @Article{mjn:99,
903    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
904    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 885  Line 923 
923    author =       {Adcroft, A., Hill C. and J. Marshall},    author =       {Adcroft, A., Hill C. and J. Marshall},
924    title =        {A new treatment of the Coriolis terms in C-grid models    title =        {A new treatment of the Coriolis terms in C-grid models
925                    at both high and low resolutions},                    at both high and low resolutions},
926    journal =      {MWR},    journal =      mwr,
927    year =         1999,    year =         1999,
928    volume =       127,    volume =       127,
929    pages =        {1928-1936}    pages =        {1928-1936},
930      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
931      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
932  }  }
933    
934  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 903  Line 943 
943  @Article{wardle:00,  @Article{wardle:00,
944    author =       {Wardle R. and Marshall J.},    author =       {Wardle R. and Marshall J.},
945    title =        {Representation of eddies in primitive equation models by a PV flux},    title =        {Representation of eddies in primitive equation models by a PV flux},
946    journal =      {JPO},    journal =      jpo,
947    year =         2000,    year =         2000,
948    volume =       30,    volume =       30,
949    number =       10,    number =       10,
# Line 920  Line 960 
960  }  }
961    
962  @Article{adcroft:02,  @Article{adcroft:02,
963    author =       {Adcroft et al.},    author =       {Adcroft, A., et~al.},
964    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
965    journal =      om,    journal =      om,
966    year =         2002,    year =         2002,
# Line 938  Line 978 
978    volume =       17    volume =       17
979  }  }
980    
981    @Article{miller_white:84,
982      author =       {Miller, M. J. and White, A. A.},
983      title =        {On the non-hydrostatic equations in pressure
984                      and sigma coordiantes},
985      journal =      qjrms,
986      year =         1984,
987      volume =       110,
988      pages =        {515-533}
989    }
990    
991    @Article{white:89,
992      author =       {White, A. A.},
993      title =        {An extended version of a nonhydrostatic, pressure coordiante model},
994      journal =      qjrms,
995      year =         1989,
996      volume =       115,
997      pages =        {1243-1251}
998    }
999    
1000  @Article{adcroft:98,  @Article{adcroft:98,
1001    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
1002    title =        {How slippery are piecewise-constant coastlines in numerical    title =        {How slippery are piecewise-constant coastlines in numerical
# Line 961  Line 1020 
1020    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1021    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a Smagorinsky-like viscosity for
1022                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1023    journal =      {MWR},    journal =      mwr,
1024    year =         2000,    year =         2000,
1025    volume =       128,    volume =       128,
1026    number =       8,    number =       8,
# Line 972  Line 1031 
1031    author =       {Wajsowicz, R.},    author =       {Wajsowicz, R.},
1032    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR    title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1033                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},                    FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1034    journal =      {JCP},    journal =      jcp,
1035    year =         1993,    year =         1993,
1036    volume =       105,    volume =       105,
1037    number =       2,    number =       2,
# Line 991  Line 1050 
1050  @Article{dm:95,  @Article{dm:95,
1051    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {Danabasoglu, G. and McWilliams J.C.},
1052    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1053    journal =      {JC},    journal =      jclim,
1054    year =         1995,    year =         1995,
1055    volume =       8,    volume =       8,
1056    number =       12,    number =       12,
# Line 1001  Line 1060 
1060  @Article{ldd:97,  @Article{ldd:97,
1061    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},    author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1062    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},    title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1063    journal =      {JPO},    journal =      jpo,
1064    year =         1997,    year =         1997,
1065    volume =       27,    volume =       27,
1066    number =       11,    number =       11,
# Line 1012  Line 1071 
1071    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1072    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in
1073                    coarse-resolution numerical models},                    coarse-resolution numerical models},
1074    journal =      {JPO},    journal =      jpo,
1075    year =         1999,    year =         1999,
1076    volume =       29,    volume =       29,
1077    number =       8,    number =       8,
# Line 1043  Line 1102 
1102  }  }
1103    
1104  @Article{molteni:03,  @Article{molteni:03,
1105    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1106    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a GCM with simplified physical
1107                    parametrization, I model climatology and variability in                    parametrizations, I: Model climatology and variability in
1108                    multidecadal experiments},                    multidecadal experiments},
1109    journal =      climd,    journal =      climd,
1110    year =         2003,    year =         2003,
# Line 1218  Line 1277 
1277    title =        {Mechanisms of air-sea CO$_2$ flux variability in the    title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1278                    Equatorial Pacific and the North Atlantic},                    Equatorial Pacific and the North Atlantic},
1279    journal =      {Global Biogeochemical Cycles},    journal =      {Global Biogeochemical Cycles},
1280    year =         {},    year =         {2004},
1281    OPTkey =       {},    OPTkey =       {},
1282    volume =       {18},    volume =       {18},
1283    number =       {doi:10.1029/2003GB002179},    number =       {doi:10.1029/2003GB002179},
# Line 1485  atmospheric boundary layer.}, Line 1544  atmospheric boundary layer.},
1544   volume       = {122},   volume       = {122},
1545   pages        = {903-927}   pages        = {903-927}
1546  }  }
1547    
1548    @Article{breth:99,
1549     author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1550                       and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1551                       and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1552                       B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1553     year           = 1999,
1554     title          = {An intercomparison of radiatively driven entrainment and turbulence
1555                      in a smoke cloud, as simulated by different numerical models.},
1556     journal        = qjrms,
1557     volume         = {125},
1558     pages          = {391-423}
1559                      }
1560    
1561    @Article{bm:99,
1562     author         = {A. C. Bushell and G.M. Martin},
1563     year           = 1999,
1564     title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1565     journal        = {Climate Dyn.},
1566     volume         = {15},
1567     pages          = {293-318}
1568                      }
1569    
1570    @Article{Inn:01,
1571     author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1572     year           = 2001,
1573     title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1574                      Implications for the Simulation of the Madden-Julian Oscillation.},
1575     journal        = {Climate Dyn.},
1576     volume         = {17},
1577     pages          = {777-794}
1578                      }
1579    
1580    @Article{kal:89,
1581     author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1582                       J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1583     year           = 1989,
1584     title          = {Rules for Interchange of Physical Parameterizations.},
1585     journal        = bams,
1586     volume         = {70},
1587     pages          = {620-622}
1588                      }
1589    
1590    @Article{wo:98,
1591     author         = {D. Williamson and J.G. Olsen},
1592     year           = 1998,
1593     title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1594     journal        = mwr,
1595     volume         = {126},
1596     pages          = {991-1000}
1597                      }
1598    @TechReport{MPI-std-20,
1599      author =       {{Message Passing Interface Forum}}},
1600      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1601      institution =  {mpi-forum.org},
1602      year =         {1998},
1603    }
1604    
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