--- manual/manual_references.bib 2001/11/13 20:23:27 1.5 +++ manual/manual_references.bib 2005/08/02 14:27:25 1.21 @@ -1,6 +1,7 @@ @string{arfm = {Annu.~Rev.~Fluid Mech.}} @string{bams = {Bull.~Am.~Met.~Soc.}} @string{blm = {Bound.~Layer~Meteorol.}} +@string{climd = {Clim.~Dynamics}} @string{jgr = {J.~Geophys.~Res.}} @string{ijrs = {Int.~J.~Remote Sensing}} @string{jas = {J.~Atmos.~Sci.}} @@ -10,6 +11,7 @@ @string{jfm = {J.~Fluid Mech.}} @string{jaot = {J.~Atmos.~Ocean.~Technol.}} @string{jms = {J.~Mar.~Sys.}} +@string{om = {Ocean Modelling}} @string{gaos = {Global Atmos.~Ocean System}} @string{grl = {Geophys.~Res.~Lett.}} @string{dsr = {Deep Sea Res.}} @@ -250,6 +252,28 @@ pages = {401 pp.}, } +@incollection{gri:89, + author = {A. Griewank}, + year = 1989, + title = {On automatic differentiation}, + booktitle = {Mathematical Programming: Recent Developments and + Applications}, + pages = {83--108}, + editor = {M. Iri and K. Tanabe}, + publisher = {Kluwer}, + address = {Dordrecht, NL}, + } + +@Article{gri:92, + author = {A.~Griewank}, + title = {Achieving logarithmic growth of temporal and spatial + complexity in reverse {A}utomatic {D}ifferentiation}, + journal = {Optimization Methods and Software}, + year = {1992}, + volume = {1}, + pages = {35--54} +} + @book{gri:00, author = {A. Griewank}, title = {Evaluating Derivatives. Principles and Techniques @@ -271,17 +295,67 @@ volume = {39}, pages = {2038--3050}, } + +@Article{Haney, + author = {R.L. Haney}, + title = {Surface thermal boundary conditions for ocean + circulation models}, + journal = jpo, + year = 1971, + volume = 1, + pages = {241--248} +} + +@Article{held-suar:94, + author = {I.M. Held and M.J. Suarez}, + year = {1994}, + title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models}, + journal = {Bulletin of the American Meteorological Society}, + volume = {75(10)}, + pages = {1825-1830} +} @Article{hil-eta:01, author = {C. Hill and M. Follows and V. Bugnion and J. Marshall}, - year = {2001}, + year = {2002}, title = {Spatial and Temporal Impacts of ocean general circulation on carbon sequestration}, - journal = {journal ???}, + journal = {Global Biogeochemical Cycles}, note = {submitted}, } - + +@ARTICLE{hib80, + AUTHOR = "W. D. {Hibler, III}", + TITLE = "Modeling a Variable Thickness Sea Ice Cover", + JOURNAL = mwr, + YEAR = 1980, + VOLUME = 1, + PAGES = "1943-1973" +} + +@Article{Holland75, + author = {W.R. Holland and L. B. Lin}, + year = {1975a}, + title = {On the origin of mesoscale eddies and their contribution + to the general circulation of the ocean. I. A preliminary + numerical experiment}, + journal = jpo, + volume = {5}, + pages = {642-657} + } + +@Article{hol-lin:75b, + author = {W.R. Holland and L. B. Lin}, + year = {1975b}, + title = {On the origin of mesoscale eddies and their contribution + to the general circulation of the ocean. II. A parameter + study}, + journal = jpo, + volume = {5}, + pages = {658-669} + } + @book{kas-eta:00, author = {P. Kasibhatla and M. Heimann and P. Rayner and N. Mahowald and R.G. Prinn and D.E. Hartley}, @@ -326,6 +400,36 @@ volume = {38A}, pages = {97--110}, } + +@TechReport{lev:94a, + author = {S. Levitus and T.P.Boyer}, + title = {{World Ocean Atlas 1994 Volume 3: Salinity}}, + institution = {NOAA Atlas NESDIS 3}, + year = 1994, + OPTkey = {}, + OPTtype = {}, + OPTnumber = {}, + OPTaddress = {U.S. Department of Commerce, Washington D.C.}, + OPTmonth = {}, + OPTnote = {}, + OPTannote = {} +} + + +@TechReport{Levitus94, + author = {S. Levitus and T.P.Boyer}, + title = {{World Ocean Atlas 1994 Volume 4: Temperature}}, + institution = {NOAA Atlas NESDIS 4}, + year = 1994, + OPTkey = {}, + OPTtype = {}, + OPTnumber = {}, + OPTaddress = {U.S. Department of Commerce, Washington D.C.}, + OPTmonth = {}, + OPTnote = {}, + OPTannote = {} +} + @Article{lew-der:85, author = {J. Lewis and J. Derber}, @@ -412,7 +516,28 @@ volume = {28}, pages = {215--248}, } - + +%% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies +%% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997. +%% (Available from Unidata or in PostScript form by anonymous FTP from +%% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also +%% a hypertext version of the User's Guide available at +%% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's +%% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are +%% also available. + +@TechReport{rew:97, + author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies}, + title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90}, + An Interface for Data Access, Version 3}, + institution = {Unidata Program Center}, + type = {Report}, + address = {Boulder, Colorado}, + year = 1997, + note = {http://www.unidata.ucar.edu/packages/netcdf/}, +} + + @Article{res-eta:98, author = {J.M. Restrepo and G.K. Leaf and A. Griewank}, year = 1998, @@ -446,10 +571,21 @@ publisher = {Springer-Verlag}, address = {Berlin (Germany)}, } + +@Article{DaSilva94, + author = {A. da Silva and A. C. Young and S. Levitus}, + year = 1994, + title = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures}, + journal = {NOAA Atlas NESDIS}, + volume = {6}, + publisher = {U.S. Department of Commerce}, + address = {Washington, D.C. (USA)}, + note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, + } @techreport{sta-eta:97, author = {D. Stammer and C. Wunsch and R. Giering and - Q. Zhang and J. Marotzke an J. Marshall and + Q. Zhang and J. Marotzke and J. Marshall and C. Hill}, year = 1997, title = {The global ocean circulation estimated from @@ -472,7 +608,16 @@ estimated from ocean observations and a general circulation model}, journal = jgr, - note = {submitted}, + note = {in press}, + } + +@Article{Stommel66, + author = {H. Stommel}, + year = 1948, + title = {The western intensification of wind-driven ocean currents}, + journal = {Trans. Am. Geophys. Union}, + volume = {29}, + pages = {206}, } @Article{tal-cou:87, @@ -634,7 +779,7 @@ } @Article{marshall:97b, - author = {Marshall, J., A. Adcroft, C. Hill, L. Perelman, and C. Heise}, + author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, title = {A finite-volume, incompressible Navier Stokes model for studies of the ocean on parallel computers}, journal = {JGR}, @@ -654,6 +799,35 @@ pages = {2293-2315} } +@Article{adcroft:04a, + author = {Adcroft, A. and J.-M. Campin}, + title = {Re-scaled height coordinates for accurate representation + of free-surface flows in ocean circulation models}, + journal = om, + year = 2004, + volume = 7, + pages = {269-284} +} + +@Article{adcroft:04b, + author = {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall}, + title = {Implementation of an Atmosphere-Ocean General Circulation Model + on the Expanded Spherical Cube}, + journal = mwr, + year = 2004, + volume = 132, + pages = {2845-2863} +} + +@Article{marshall:04, + author = {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White}, + title = {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms}, + journal = mwr, + year = 2004, + volume = 132, + pages = {2882-2894} +} + @Article{visbeck:97, author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, title = {Specification of eddy transfer coefficients in @@ -679,7 +853,7 @@ } @Article{marshall:98, - author = {Marshall, J., Jones, H. and C. Hill}, + author = {J. Marshall and H. Jones and C. Hill}, title = {Efficient ocean modeling using non-hydrostatic algorithms}, journal = {JMR}, year = 1998, @@ -720,8 +894,10 @@ @InProceedings{hill:99, author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, title = {A Strategy for Terascale Climate Modeling}, - booktitle = {In Proceedings of the Eight ECMWF Workshop on the Use of Parallel Processors in Meteorology}, - year = 1999 + booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology}, + year = 1999, + pages = {406-425}, + publisher = {World Scientific}, } @Article{wardle:00, @@ -738,7 +914,7 @@ author = {Adcroft, A. and J.-M. Campin}, title = {Comparison of finite volume schemes and direct-space-time methods for ocean circulation models}, - journal = {OM}, + journal = om, year = 2002, note = {in preparation} } @@ -746,7 +922,7 @@ @Article{adcroft:02, author = {Adcroft et al.}, title = {Energy conversion in discrete numerical models}, - journal = {OM}, + journal = om, year = 2002, note = {in preparation} } @@ -804,11 +980,12 @@ } @Article{campin:02, - author = {Campin et al.}, + author = {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall}, title = {Conservation of properties in a free-surface model}, - journal = {OM}, - year = 2002, - note = {in preparation} + journal = om, + year = 2004, + volume = 6, + pages = {221-244} } @Article{dm:95, @@ -842,12 +1019,233 @@ pages = {1682-1700} } -@Article{roe:85, - author = {Roe, P.L.}, - title = {Some contributions to the modeling of discontinuous flows}, - journal = {Lect. Notes Appl. Math.}, - year = 1985, - volume = 22, - pages = {163-193} +@incollection{roe:85, + author = {P.L. Roe}, + year = 1985, + title = {Some contributions to the modelling of discontinuous flows}, + booktitle = {Large-Scale Computations in Fluid Mechanics}, + series = {Lectures in Applied Mathematics}, + volume = 22, + pages = {163-193}, + editor = {B.E. Engquist and S. Osher and R.C.J. Somerville}, + publisher = {American Mathematical Society}, + address = {Providence, RI}, +} + +@Article{trenberth90, + author = {K. M. Trenberth and J. Olson and W. G. Large}, + title = {The Mean Annual Cycle in {G}lobal {O}cean Wind + Stress}, + journal = jpo, + year = 1990, + volume = 20, + pages = {1742--1760} +} + +@Article{molteni:03, + author = {K. M. Trenberth and J. Olson and W. G. Large}, + title = {Atmospheric simulations using a GCM with simplified physical + parametrization, I model climatology and variability in + multidecadal experiments}, + journal = climd, + year = 2003, + volume = 20, + pages = {175--191} +} + +@Article{jiang99, + author = {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli}, + title = {An Assessment of the {G}eophysical {F}luid + {D}ynamics {L}aboratory Ocean Model with Coarse + Resolution: Annual-Mean Climatology}, + journal = jgr, + year = 1999, + volume = 104, + number = {C11}, + pages = {25,623--25,645} +} + +@Article{szoeke02, + author = {de Szoeke, Roland A. and Roger M. Samelson}, + title = {The Duality between the {B}oussinesq and + {N}on-{B}oussinesq Hydrostatic Equations of Motion}, + journal = jpo, + year = 2002, + volume = 32, + number = 8, + pages = {2194--2203} +} + +@Article{jackett95, + author = {David R. Jackett and Trevor J. McDougall}, + title = {Minimal Adjustment of Hydrographic Profiles to + Achieve Static Stability}, + journal = jaot, + year = 1995, + volume = 12, + number = 4, + pages = {381--389} +} + +@Article{mcdougall03, + author = {Trevor J. McDougall and David R. Jackett and Daniel + G. Wright and Rainer Feistel}, + title = {Accurate and Computationally Efficient Algorithms + for Potential Temperature and Density of Seawater}, + journal = jaot, + year = {2003}, + OPTkey = {}, + OPTvolume = {}, + OPTnumber = {}, + OPTpages = {}, + OPTmonth = {}, + OPTnote = {{\textup{In press}}}, + OPTannote = {} +} + +@TechReport{fofonoff83, + author = "Fofonoff, P. and Millard, Jr., R.C.", + title = "Algorithms for Computation of Fundamental Properties + of Seawater", + institution = "Unesco", + year = 1983, + type = "Unesco Technical Papers in Marine Science", + number = 44, + pages = {53 pp.} +} + +@ARTICLE{zha98a, + AUTHOR = "J. Zhang and W. D. {Hibler, III} and M. Steele + and D. A. Rothrock", + TITLE = "Arctic ice-ocean modeling with and without climate restoring", + JOURNAL = jpo, + YEAR = 1998, + VOLUME = 28, + PAGES = "191-217" +} + +@ARTICLE{sem76, + AUTHOR = "Semtner, Jr., Albert J.", + TITLE = "A model for the thermodynamic growth of sea ice in + numerical investigations of climate", + JOURNAL = jpo, + YEAR = 1976, + VOLUME = 6, + PAGES = "379-389" +} + +@ARTICLE{win00, + AUTHOR = "M. Winton", + TITLE = "A reformulated three-layer sea ice model", + JOURNAL = jaot, + YEAR = 2000, + VOLUME = 17, + PAGES = "525-531" +} + +@ARTICLE{hib79, + AUTHOR = "W. D. {Hibler, III}", + TITLE = "A Dynamic Thermodynamic Sea Ice Model", + JOURNAL = jpo, + YEAR = 1979, + VOLUME = 9, + PAGES = "815-846" +} + +@ARTICLE{fla92, + AUTHOR = "G. M. Flato and W. D. {Hibler, III}", + TITLE = "Modeling pack ice as a cavitating fluid", + JOURNAL = jpo, + YEAR = 1992, + VOLUME = 22, + PAGES = "626-651" +} + +@ARTICLE{hun97, + AUTHOR = "E. C. Hunke and J. K. Dukowicz", + TITLE = "An elastic-viscous-plastic model for sea ice dynamics", + JOURNAL = jpo, + YEAR = 1997, + VOLUME = 27, + PAGES = "1849-1867" +} + +@ARTICLE{zha00, + AUTHOR = "Jinlun Zhang and Drew Rothrock", + TITLE = "Modeling Arctic Sea Ice with an Efficient Plastic Solution", + JOURNAL = jgr, + YEAR = 2000, + VOLUME = 105, + PAGES = "3325-3338" +} + +@Article{Shapiro_70, + author = {Shapiro, R.}, + title = {Smoothing, filtering, and boundary effects}, + journal = {Reviews of Geophysics and Space Physics}, + year = {1970}, + volume = {8}, + number = {2}, + pages = {359--387}, +} + +@TechReport{Dutkiewicz_etal_05, + author = {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone}, + title = {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and + its Coupling to a Two-Dimensional Atmospheric Model: Uses + in Climate Change Studies, Report 122}, + institution = {MIT Joint Program of the Science and Policy of Global Change}, + year = {2005}, + OPTnumber = {122}, + address = {Cambridge, MA}, + note = {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf}, +} + +@Article{Follows_etal_05, + author = {M. Follows and T. Ito and S. Dutkiewicz}, + title = {A Compact and Accurate Carbonate Chemistry Solver for Ocean + Biogeochemistry Models}, + journal = {Ocean Modeling}, + year = {{in press}}, + OPTkey = {}, + OPTvolume = {}, + OPTnumber = {}, + OPTpages = {}, +} + +@Article{McKinley_etal_04, + author = {G. McKinley and M. J. Follows and J. C. Marshall}, + title = {Mechanisms of air-sea CO$_2$ flux variability in the + Equatorial Pacific and the North Atlantic}, + journal = {Global Biogeochemical Cycles}, + year = {}, + OPTkey = {}, + volume = {18}, + number = {doi:10.1029/2003GB002179}, + OPTpages = {}, +} + +@TechReport{Trenberth_etal_89, + author = {K. Trenberth and J. Olson and W. Large}, + title = {A global wind stress climatology based on ECMWF analyses}, + institution = {NCAR}, + year = {1989}, + OPTkey = {}, + OPTtype = {}, + number = {NCAR/TN-338+STR}, + address = {Boulder, CO}, + OPTmonth = {}, +} + +@Article{Wanninkhof_92, + author = {R. Wanninkhof}, + title = {Relationship between wind speed and gas exchange over the ocean}, + journal = jgr, + year = {1992}, + OPTkey = {}, + volume = {97}, + OPTnumber = {}, + pages = {7373--7382}, + OPTmonth = {}, }