| 1 | @string{arfm    = {Annu.~Rev.~Fluid Mech.}} | 
| 2 | @string{bams    = {Bull.~Am.~Met.~Soc.}} | 
| 3 | @string{blm     = {Bound.~Layer~Meteorol.}} | 
| 4 | @string{climd   = {Clim.~Dynamics}} | 
| 5 | @string{jgr     = {J.~Geophys.~Res.}} | 
| 6 | @string{ijrs    = {Int.~J.~Remote Sensing}} | 
| 7 | @string{jas     = {J.~Atmos.~Sci.}} | 
| 8 | @string{jpo     = {J.~Phys.~Oceanogr.}} | 
| 9 | @string{jclim   = {J.~Clim.}} | 
| 10 | @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}} | 
| 11 | @string{jfm     = {J.~Fluid Mech.}} | 
| 12 | @string{jaot    = {J.~Atmos.~Ocean.~Technol.}} | 
| 13 | @string{jms     = {J.~Mar.~Sys.}} | 
| 14 | @string{om      = {Ocean Modelling}} | 
| 15 | @string{gaos    = {Global Atmos.~Ocean System}} | 
| 16 | @string{grl     = {Geophys.~Res.~Lett.}} | 
| 17 | @string{dsr     = {Deep Sea Res.}} | 
| 18 | @string{dao     = {Dyn.~Atmos.~Oceans}} | 
| 19 | @string{mwr     = {Mon.~Wea.~Rev.}} | 
| 20 | @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}} | 
| 21 | @string{tel     = {Tellus}} | 
| 22 | @string{cup     = {Cambridge University Press}} | 
| 23 | @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}} | 
| 24 | @string{ifremer = {IFREMER/CERSAT}} | 
| 25 | @string{igarss  = {IEEE Press, Piscataway, N.J., USA}} | 
| 26 | @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}} | 
| 27 | @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}} | 
| 28 | @string{mpi     = {MPI f\"ur Meteorologie}} | 
| 29 | @string{ecmwf   = {ECMWF}} | 
| 30 | @string{estec   = {European Space Research and Technology Centre | 
| 31 | (ESTEC)}} | 
| 32 | @string{esa     = {European Space Agency (ESA)}} | 
| 33 |  | 
| 34 | @Article{bis-eta:92, | 
| 35 | author         = {C.H. Bishof and G.F. Corliss and L. Green and | 
| 36 | A. Griewank and K. Haigler and P. Newman}, | 
| 37 | year           = 1992, | 
| 38 | title          = {Automatic differentiation of advanced GFD codes | 
| 39 | for multidisciplinary design}, | 
| 40 | journal        = {Journal on Computing Systems in Engineering}, | 
| 41 | volume         = {3}, | 
| 42 | pages          = {625--638}, | 
| 43 | } | 
| 44 |  | 
| 45 | @incollection{bis:94, | 
| 46 | author         = {C.H. Bishof}, | 
| 47 | year           = 1994, | 
| 48 | title          = {Automatic differentiation, tangent linear models | 
| 49 | and pseudo-adjoints}, | 
| 50 | booktitle      = {High Performance Computing in the Geosciences}, | 
| 51 | series         = {Series C: Mathematical and Physical Sciences}, | 
| 52 | pages          = {59--80}, | 
| 53 | editor         = {F.X. {Le Dimet}}, | 
| 54 | publisher      = {Kluwer}, | 
| 55 | address        = {Dordrecht, NL}, | 
| 56 | } | 
| 57 |  | 
| 58 | @techreport{bis-eta:94, | 
| 59 | author         = {C. Bishof and A. Carle and P. Khademi and | 
| 60 | A. Maurer}, | 
| 61 | year           = 1994, | 
| 62 | title          = {The ADIFOR 2.0 system for the automatic | 
| 63 | differentiation of FORTRAN 77 programs}, | 
| 64 | institution    = {Argonne National Laboratory, Mathematics and | 
| 65 | Computer Science Division}, | 
| 66 | type           = {Argonne Preprint}, | 
| 67 | number         = {ANL-MCS-P981-1194}, | 
| 68 | address        = {ANL; 9700 South Cass Ave.; | 
| 69 | Argonne (ILL), 90439; USA}, | 
| 70 | note           = {http://www.mcs.anl.gov/autodiff/}, | 
| 71 | } | 
| 72 |  | 
| 73 | @techreport{bis-roh:97, | 
| 74 | author         = {C. Bishof and L. Roh}, | 
| 75 | year           = 1997, | 
| 76 | title          = {ADIC: An extensible automatic differentiation tool | 
| 77 | for ANSI-C}, | 
| 78 | institution    = {Argonne National Laboratory, Mathematics and | 
| 79 | Computer Science Division}, | 
| 80 | type           = {Argonne Preprint}, | 
| 81 | number         = {ANL-MCS-P626-1196}, | 
| 82 | address        = {ANL; 9700 South Cass Ave.; | 
| 83 | Argonne (ILL), 90439; USA}, | 
| 84 | note           = {http://www.mcs.anl.gov/autodiff/}, | 
| 85 | } | 
| 86 |  | 
| 87 | @Article{cou-tal:87, | 
| 88 | author         = {P. Courtier and O. Talagrand}, | 
| 89 | year           = 1987, | 
| 90 | title          = {Variational assimilation of meteorological | 
| 91 | observations with the adjoint vorticity equation. | 
| 92 | II: Numerical results}, | 
| 93 | journal        = qjrms, | 
| 94 | volume         = {113}, | 
| 95 | pages          = {1329--1347}, | 
| 96 | } | 
| 97 |  | 
| 98 | @Article{cou-tal:90, | 
| 99 | author         = {P. Courtier and O. Talagrand}, | 
| 100 | year           = 1990, | 
| 101 | title          = {Variational assimilation of meteorological | 
| 102 | observations with direct and adjoint shallow-water | 
| 103 | equations}, | 
| 104 | journal        = tel, | 
| 105 | volume         = {42A}, | 
| 106 | pages          = {531--549}, | 
| 107 | } | 
| 108 |  | 
| 109 | @Article{cou-eta:94, | 
| 110 | author         = {P. Courtier and J.-N. Th{\'e}paut and | 
| 111 | A. Hollingsworth}, | 
| 112 | year           = 1994, | 
| 113 | title          = {A strategy for operational implementation of | 
| 114 | 4-D-VAR using an incremental approach}, | 
| 115 | journal        = qjrms, | 
| 116 | volume         = {120}, | 
| 117 | pages          = {1367--1387}, | 
| 118 | } | 
| 119 |  | 
| 120 | @Article{err:97, | 
| 121 | author         = {R.M. Errico}, | 
| 122 | year           = 1997, | 
| 123 | title          = {What is an adjoint model}, | 
| 124 | journal        = bams, | 
| 125 | volume         = {78}, | 
| 126 | pages          = {2577--2591}, | 
| 127 | } | 
| 128 |  | 
| 129 | @Article{far-moo:92, | 
| 130 | author         = {B.F. Farrell and A.M. Moore}, | 
| 131 | year           = {1992}, | 
| 132 | title          = {An adjoint method for obtaining the most rapidly | 
| 133 | growing perturbation to oceanic flows}, | 
| 134 | journal        = jpo, | 
| 135 | volume         = {22}, | 
| 136 | pages          = {338--349}, | 
| 137 | } | 
| 138 |  | 
| 139 | @Article{far-ioa:96a, | 
| 140 | author         = {B.F. Farrell and P. Ioannou}, | 
| 141 | year           = {1996a}, | 
| 142 | title          = {Generalized stability theory. Part I: | 
| 143 | Autonomous operators}, | 
| 144 | journal        = jas, | 
| 145 | volume         = {53}, | 
| 146 | pages          = {2025--2040}, | 
| 147 | } | 
| 148 |  | 
| 149 | @Article{far-ioa:96b, | 
| 150 | author         = {B.F. Farrell and P. Ioannou}, | 
| 151 | year           = {1996b}, | 
| 152 | title          = {Generalized stability theory. Part I: | 
| 153 | Nonautonomous operators}, | 
| 154 | journal        = jas, | 
| 155 | volume         = {53}, | 
| 156 | pages          = {2041--2053}, | 
| 157 | } | 
| 158 |  | 
| 159 | @techreport{fau-pap:98, | 
| 160 | author         = {C. Faure and Y. Papegay}, | 
| 161 | year           = 1998, | 
| 162 | title          = {Odyss{\'e}e User's Guide. Version 1.7}, | 
| 163 | institution    = {Institut National de Recherche en Informatique | 
| 164 | et en Automatique}, | 
| 165 | type           = {Rapport Technique}, | 
| 166 | number         = {0224}, | 
| 167 | address        = {INRIA; 2004, route des Luciolis, B.P. 93; | 
| 168 | 06902 Sophia Antipolis Cedex; France}, | 
| 169 | note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html}, | 
| 170 | } | 
| 171 |  | 
| 172 | @Article{fau:00, | 
| 173 | author         = {C. Faure}, | 
| 174 | year           = {2000}, | 
| 175 | title          = {Adjoining strategies for multi-layered programs}, | 
| 176 | journal        = {Optimisation Methods and Software}, | 
| 177 | note           = {in press}, | 
| 178 | } | 
| 179 |  | 
| 180 | @Article{gen-mcw:90, | 
| 181 | author         = {P.R. Gent and J.C. McWilliams}, | 
| 182 | year           = 1990, | 
| 183 | title          = {Isopycnal mixing in ocean circulation models}, | 
| 184 | journal        = jpo, | 
| 185 | volume         = {20}, | 
| 186 | pages          = {150--155}, | 
| 187 | } | 
| 188 |  | 
| 189 | @Article{gen-eta:95, | 
| 190 | author         = {P.R. Gent and J. Willebrand and T.J. McDougall | 
| 191 | and J.C. McWilliams}, | 
| 192 | year           = 1995, | 
| 193 | title          = {Parameterizing eddy-induced tracer transports in | 
| 194 | ocean circulation models}, | 
| 195 | journal        = jpo, | 
| 196 | volume         = {25}, | 
| 197 | pages          = {463--474}, | 
| 198 | } | 
| 199 |  | 
| 200 | @Article{gie-kam:98, | 
| 201 | author         = {R. Giering and T. Kaminski}, | 
| 202 | year           = 1998, | 
| 203 | title          = {Recipes for adjoint code construction}, | 
| 204 | journal        = {ACM Transactions on Mathematical Software}, | 
| 205 | volume         = 24, | 
| 206 | pages          = {437--474}, | 
| 207 | } | 
| 208 |  | 
| 209 | @techreport{gie:99, | 
| 210 | author         = {R. Giering}, | 
| 211 | year           = 1999, | 
| 212 | title          = {Tangent linear and Adjoint Model Compiler. | 
| 213 | Users manual 1.4 (TAMC Version 5.2)}, | 
| 214 | institution    = {Massachusetts Institute of Technology}, | 
| 215 | type           = {Report}, | 
| 216 | number         = {~}, | 
| 217 | address        = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA) | 
| 218 | 02139; USA}, | 
| 219 | note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html}, | 
| 220 | } | 
| 221 |  | 
| 222 | @incollection{gie:00, | 
| 223 | author         = {R. Giering}, | 
| 224 | editor         = {P. Kasibhatla and M. Heimann and P. Rayner and | 
| 225 | N. Mahowald and R.G. Prinn and D.E. Hartley}, | 
| 226 | year           = 2000, | 
| 227 | booktitle      = {Inverse methods in global biogeochemical cycles}, | 
| 228 | title          = {Tangent linear and adjoint biogeochemical models}, | 
| 229 | publisher      = {American Geophysical Union}, | 
| 230 | series         = {Geophysical Monograph}, | 
| 231 | volume         = {114}, | 
| 232 | address        = {Washington, DC}, | 
| 233 | pages          = {33--48}, | 
| 234 | } | 
| 235 |  | 
| 236 | @Article{gil-lem:89, | 
| 237 | author         = {J.C. Gilbert and C. Lemar\'echal}, | 
| 238 | year           = 1989, | 
| 239 | title          = {Some numerical experiments with variable-storage | 
| 240 | quasi-Newton algorithms}, | 
| 241 | journal        = {Math. Programming}, | 
| 242 | volume         = {45}, | 
| 243 | pages          = {407--435}, | 
| 244 | } | 
| 245 |  | 
| 246 | @book{gil-eta:81, | 
| 247 | author         = {P.E. Gill and W. Murray and M.H. Wright}, | 
| 248 | title          = {Practical optimization}, | 
| 249 | year           = 1981, | 
| 250 | publisher      = {Academic Press}, | 
| 251 | address        = {London}, | 
| 252 | pages          = {401 pp.}, | 
| 253 | } | 
| 254 |  | 
| 255 | @incollection{gri:89, | 
| 256 | author         = {A. Griewank}, | 
| 257 | year           = 1989, | 
| 258 | title          = {On automatic differentiation}, | 
| 259 | booktitle      = {Mathematical Programming: Recent Developments and | 
| 260 | Applications}, | 
| 261 | pages          = {83--108}, | 
| 262 | editor         = {M. Iri and K. Tanabe}, | 
| 263 | publisher      = {Kluwer}, | 
| 264 | address        = {Dordrecht, NL}, | 
| 265 | } | 
| 266 |  | 
| 267 | @Article{gri:92, | 
| 268 | author =       {A.~Griewank}, | 
| 269 | title =        {Achieving logarithmic growth of temporal and spatial | 
| 270 | complexity in reverse {A}utomatic {D}ifferentiation}, | 
| 271 | journal       = {Optimization Methods and Software}, | 
| 272 | year          = {1992}, | 
| 273 | volume        = {1}, | 
| 274 | pages         = {35--54} | 
| 275 | } | 
| 276 |  | 
| 277 | @book{gri:00, | 
| 278 | author         = {A. Griewank}, | 
| 279 | title          = {Evaluating Derivatives. Principles and Techniques | 
| 280 | of Algorithmic Differentiation}, | 
| 281 | year           = 2000, | 
| 282 | series         = {Frontiers in Applied Mathematics}, | 
| 283 | volume         = {19}, | 
| 284 | publisher      = {SIAM}, | 
| 285 | address        = {Philadelphia}, | 
| 286 | pages          = {369 pp.}, | 
| 287 | } | 
| 288 |  | 
| 289 | @Article{hal-eta:82, | 
| 290 | author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger}, | 
| 291 | year           = 1982, | 
| 292 | title          = {Sensitivity analysis of a radiative-convective | 
| 293 | model by the adjoint method}, | 
| 294 | journal        = jas, | 
| 295 | volume         = {39}, | 
| 296 | pages          = {2038--3050}, | 
| 297 | } | 
| 298 |  | 
| 299 | @Article{Haney, | 
| 300 | author =       {R.L. Haney}, | 
| 301 | title =        {Surface thermal boundary conditions for ocean | 
| 302 | circulation models}, | 
| 303 | journal =      jpo, | 
| 304 | year =         1971, | 
| 305 | volume =       1, | 
| 306 | pages =        {241--248} | 
| 307 | } | 
| 308 |  | 
| 309 | @Article{held-suar:94, | 
| 310 | author         = {I.M. Held and M.J. Suarez}, | 
| 311 | year           = {1994}, | 
| 312 | title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models}, | 
| 313 | journal        = {Bulletin of the American Meteorological Society}, | 
| 314 | volume         = {75(10)}, | 
| 315 | pages          = {1825-1830} | 
| 316 | } | 
| 317 |  | 
| 318 | @Article{hil-eta:01, | 
| 319 | author         = {C. Hill and M. Follows and V. Bugnion and | 
| 320 | J. Marshall}, | 
| 321 | year           = {2002}, | 
| 322 | title          = {Spatial and Temporal Impacts of ocean general | 
| 323 | circulation on carbon sequestration}, | 
| 324 | journal        = {Global Biogeochemical Cycles}, | 
| 325 | note           = {submitted}, | 
| 326 | } | 
| 327 |  | 
| 328 | @ARTICLE{hib80, | 
| 329 | AUTHOR      = "W. D. {Hibler, III}", | 
| 330 | TITLE       = "Modeling a Variable Thickness Sea Ice Cover", | 
| 331 | JOURNAL     = mwr, | 
| 332 | YEAR        = 1980, | 
| 333 | VOLUME      = 1, | 
| 334 | PAGES       = "1943-1973" | 
| 335 | } | 
| 336 |  | 
| 337 | @Article{Holland75, | 
| 338 | author         = {W.R. Holland and L. B. Lin}, | 
| 339 | year           = {1975a}, | 
| 340 | title          = {On the origin of mesoscale eddies and their contribution | 
| 341 | to the general circulation of the ocean. I. A preliminary | 
| 342 | numerical experiment}, | 
| 343 | journal        = jpo, | 
| 344 | volume         = {5}, | 
| 345 | pages          = {642-657} | 
| 346 | } | 
| 347 |  | 
| 348 | @Article{hol-lin:75b, | 
| 349 | author         = {W.R. Holland and L. B. Lin}, | 
| 350 | year           = {1975b}, | 
| 351 | title          = {On the origin of mesoscale eddies and their contribution | 
| 352 | to the general circulation of the ocean. II. A parameter | 
| 353 | study}, | 
| 354 | journal        = jpo, | 
| 355 | volume         = {5}, | 
| 356 | pages          = {658-669} | 
| 357 | } | 
| 358 |  | 
| 359 | @book{kas-eta:00, | 
| 360 | author         = {P. Kasibhatla and M. Heimann and P. Rayner and | 
| 361 | N. Mahowald and R.G. Prinn and D.E. Hartley}, | 
| 362 | year           = 2000, | 
| 363 | title          = {Inverse methods in global biogeochemical cycles}, | 
| 364 | publisher      = {American Geophysical Union}, | 
| 365 | series         = {Geophysical Monograph}, | 
| 366 | volume         = {114}, | 
| 367 | address        = {Washington, DC}, | 
| 368 | pages          = {324 pp.}, | 
| 369 | } | 
| 370 |  | 
| 371 | @Article{lar-eta:94, | 
| 372 | author         = {W.G. Large and J.C. McWilliams and S.C. Doney}, | 
| 373 | year           = 1994, | 
| 374 | title          = {Oceanic vertical mixing: A review and a model | 
| 375 | with nonlocal boundary layer parameterization}, | 
| 376 | journal        = {Rev.~Geophys.}, | 
| 377 | volume         = {32}, | 
| 378 | pages          = {363--403}, | 
| 379 | } | 
| 380 |  | 
| 381 | @Article{lar-eta:97, | 
| 382 | author         = {W.G. Large and G. Danabasoglu and S.C. Doney | 
| 383 | and J.C. McWilliams}, | 
| 384 | year           = 1997, | 
| 385 | title          = {Sensitivity to surface forcing and boundary layer | 
| 386 | mixing in a global ocean model: annual-mean | 
| 387 | climatology}, | 
| 388 | journal        = jpo, | 
| 389 | volume         = {27}, | 
| 390 | pages          = {2418--2447}, | 
| 391 | } | 
| 392 |  | 
| 393 | @Article{led-tal:86, | 
| 394 | author         = {F.-X. {Le Dimet} and O. Talagrand}, | 
| 395 | year           = 1986, | 
| 396 | title          = {Variational algorithms for analysis and | 
| 397 | assimilation of meteorological observations: | 
| 398 | theoretical aspects}, | 
| 399 | journal        = tel, | 
| 400 | volume         = {38A}, | 
| 401 | pages          = {97--110}, | 
| 402 | } | 
| 403 |  | 
| 404 | @TechReport{lev:94a, | 
| 405 | author =       {S. Levitus and T.P.Boyer}, | 
| 406 | title =        {{World Ocean Atlas 1994 Volume 3: Salinity}}, | 
| 407 | institution =  {NOAA Atlas NESDIS 3}, | 
| 408 | year =         1994, | 
| 409 | OPTkey =       {}, | 
| 410 | OPTtype =      {}, | 
| 411 | OPTnumber =    {}, | 
| 412 | OPTaddress =   {U.S. Department of Commerce, Washington D.C.}, | 
| 413 | OPTmonth =     {}, | 
| 414 | OPTnote =      {}, | 
| 415 | OPTannote =    {} | 
| 416 | } | 
| 417 |  | 
| 418 |  | 
| 419 | @TechReport{Levitus94, | 
| 420 | author =       {S. Levitus and T.P.Boyer}, | 
| 421 | title =        {{World Ocean Atlas 1994 Volume 4: Temperature}}, | 
| 422 | institution =  {NOAA Atlas NESDIS 4}, | 
| 423 | year =         1994, | 
| 424 | OPTkey =       {}, | 
| 425 | OPTtype =      {}, | 
| 426 | OPTnumber =    {}, | 
| 427 | OPTaddress =   {U.S. Department of Commerce, Washington D.C.}, | 
| 428 | OPTmonth =     {}, | 
| 429 | OPTnote =      {}, | 
| 430 | OPTannote =    {} | 
| 431 | } | 
| 432 |  | 
| 433 |  | 
| 434 | @Article{lew-der:85, | 
| 435 | author         = {J. Lewis and J. Derber}, | 
| 436 | year           = {1985}, | 
| 437 | title          = {The use of adjoint equations to solve a variational | 
| 438 | adjustment problem with advective constraints}, | 
| 439 | journal        = {Tellus}, | 
| 440 | volume         = {37A}, | 
| 441 | pages          = {309--322}, | 
| 442 | } | 
| 443 |  | 
| 444 | @techreport{lon:88, | 
| 445 | author         = {R.B. Long}, | 
| 446 | year           = 1988, | 
| 447 | title          = {Notes on assimilating observations into | 
| 448 | numerical models}, | 
| 449 | institution    = {Delft Hydraulics}, | 
| 450 | type           = {Report}, | 
| 451 | number         = {~}, | 
| 452 | pages          = {38 pp.}, | 
| 453 | address        = {Delft (NL)}, | 
| 454 | } | 
| 455 |  | 
| 456 | @Article{maro-wun:93, | 
| 457 | author         = {J. Marotzke and C. Wunsch}, | 
| 458 | year           = 1993, | 
| 459 | title          = {Finding the steady state of a general circulation | 
| 460 | model through data assimilation: | 
| 461 | Application to the North Atlantic Ocean}, | 
| 462 | journal        = jgr, | 
| 463 | volume         = {98, C11}, | 
| 464 | pages          = {20,149--20,167}, | 
| 465 | } | 
| 466 |  | 
| 467 | @Article{maro-eta:99, | 
| 468 | author         = {J. Marotzke and R. Giering and K.Q. Zhang and | 
| 469 | D. Stammer and C. Hill and T. Lee}, | 
| 470 | year           = 1999, | 
| 471 | title          = {Construction of the adjoint MIT ocean general | 
| 472 | circulation model and application to Atlantic heat | 
| 473 | transport variability}, | 
| 474 | journal        = jgr, | 
| 475 | volume         = {104, C12}, | 
| 476 | pages          = {29,529--29,547}, | 
| 477 | } | 
| 478 |  | 
| 479 | @Article{mars-eta:97a, | 
| 480 | author         = {J. Marshall and C. Hill and L. Perelman and | 
| 481 | A. Adcroft}, | 
| 482 | year           = {1997a}, | 
| 483 | title          = {Hydrostatic, quasi-hydrostatic and | 
| 484 | nonhydrostatic ocean modeling}, | 
| 485 | journal        = jgr, | 
| 486 | volume         = {102, C3}, | 
| 487 | pages          = {5,733--5,752}, | 
| 488 | } | 
| 489 |  | 
| 490 | @Article{mars-eta:97b, | 
| 491 | author         = {J. Marshall and A. Adcroft and C. Hill and | 
| 492 | L. Perelman and C. Heisey}, | 
| 493 | year           = {1997b}, | 
| 494 | title          = {Hydrostatic, quasi-hydrostatic and | 
| 495 | nonhydrostatic ocean modeling}, | 
| 496 | journal        = jgr, | 
| 497 | volume         = {102, C3}, | 
| 498 | pages          = {5,753--5,766}, | 
| 499 | } | 
| 500 |  | 
| 501 | @Article{mars-sha:98, | 
| 502 | author         = {J. Marshall and H. Jones and C. Hill}, | 
| 503 | year           = 1998, | 
| 504 | title          = {Efficient ocean modeling using | 
| 505 | non-hydrostatic algorithms}, | 
| 506 | journal        = jms, | 
| 507 | volume         = {18}, | 
| 508 | pages          = {115--134}, | 
| 509 | } | 
| 510 |  | 
| 511 | @Article{mcw:96, | 
| 512 | author         = {J. McWilliams}, | 
| 513 | year           = 1996, | 
| 514 | title          = {Modeling the oceanic general circulation}, | 
| 515 | journal        = arfm, | 
| 516 | volume         = {28}, | 
| 517 | pages          = {215--248}, | 
| 518 | } | 
| 519 |  | 
| 520 | %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies | 
| 521 | %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997. | 
| 522 | %% (Available from Unidata or in PostScript form by anonymous FTP from | 
| 523 | %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also | 
| 524 | %%   a hypertext version of the User's Guide available at | 
| 525 | %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's | 
| 526 | %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are | 
| 527 | %%   also available. | 
| 528 |  | 
| 529 | @TechReport{rew:97, | 
| 530 | author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies}, | 
| 531 | title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90}, | 
| 532 | An Interface for Data Access, Version 3}, | 
| 533 | institution =  {Unidata Program Center}, | 
| 534 | type =         {Report}, | 
| 535 | address =      {Boulder, Colorado}, | 
| 536 | year =         1997, | 
| 537 | note =         {http://www.unidata.ucar.edu/packages/netcdf/}, | 
| 538 | } | 
| 539 |  | 
| 540 |  | 
| 541 | @Article{res-eta:98, | 
| 542 | author         = {J.M. Restrepo and G.K. Leaf and A. Griewank}, | 
| 543 | year           = 1998, | 
| 544 | title          = {Circumventing storage limitations in variational | 
| 545 | data assimilation studies}, | 
| 546 | journal        = {SIAM J. Sci. Comput.}, | 
| 547 | volume         = {19}, | 
| 548 | pages          = {1586--1605}, | 
| 549 | } | 
| 550 |  | 
| 551 | @Article{ros-eta:93, | 
| 552 | author         = {N. Rostaing and S. Dalmas and A. Galligo}, | 
| 553 | year           = 1993, | 
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| 570 | editor         = {{D.L.T. Anderson and J. Willebrand}}, | 
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| 585 |  | 
| 586 | @techreport{sta-eta:97, | 
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| 590 | year           = 1997, | 
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| 594 | institution    = {Center for Global Change Science, Massachusetts | 
| 595 | Institute of Technology}, | 
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| 598 | pages          = {40 pp.}, | 
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| 606 | year           = 2001, | 
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| 689 | journal        = jgr, | 
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| 698 | of oceanic inverse problems}, | 
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| 740 | publisher      = cup, | 
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| 754 |  | 
| 755 |  | 
| 756 | @InCollection{hill:95, | 
| 757 | author =       {Hill, C. and J. Marshall}, | 
| 758 | title =        {Application of a Parallel Navier-Stokes Model to | 
| 759 | Ocean Circulation in Parallel Computational Fluid | 
| 760 | Dynamics}, | 
| 761 | booktitle =    {Implementations and Results Using Parallel | 
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| 765 | year =         1995, | 
| 766 | editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor} | 
| 767 | } | 
| 768 |  | 
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| 770 | @Article{marshall:97a, | 
| 771 | author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, | 
| 772 | title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean | 
| 773 | modeling}, | 
| 774 | journal =      {JGR}, | 
| 775 | year =         1997, | 
| 776 | volume =       102, | 
| 777 | number =       {C3}, | 
| 778 | pages =        {5733-5752} | 
| 779 | } | 
| 780 |  | 
| 781 | @Article{marshall:97b, | 
| 782 | author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, | 
| 783 | title =        {A finite-volume, incompressible Navier Stokes model for | 
| 784 | studies of the ocean on parallel computers}, | 
| 785 | journal =      {JGR}, | 
| 786 | year =         1997, | 
| 787 | volume =       102, | 
| 788 | number =       {C3}, | 
| 789 | pages =        {5753-5766} | 
| 790 | } | 
| 791 |  | 
| 792 | @Article{adcroft:97, | 
| 793 | author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall}, | 
| 794 | title =        {Representation of topography by shaved cells in a height | 
| 795 | coordinate ocean model}, | 
| 796 | journal =      {MWR}, | 
| 797 | year =         1997, | 
| 798 | volume =       125, | 
| 799 | pages =        {2293-2315} | 
| 800 | } | 
| 801 |  | 
| 802 | @Article{adcroft:04, | 
| 803 | author =       {Adcroft, A.J. and J.-M. Campin}, | 
| 804 | title =        {Re-scaled height coordinates for accurate representation | 
| 805 | of free-surface flows in ocean circulation models}, | 
| 806 | journal =      om, | 
| 807 | year =         2004, | 
| 808 | note =         {in press} | 
| 809 | } | 
| 810 |  | 
| 811 | @Article{visbeck:97, | 
| 812 | author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, | 
| 813 | title =        {Specification of eddy transfer coefficients in | 
| 814 | coarse-resolution ocean circulation models}, | 
| 815 | journal =      {JPO}, | 
| 816 | year =         1997, | 
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| 818 | number =       3, | 
| 819 | pages =        {381-402} | 
| 820 | } | 
| 821 |  | 
| 822 | @Article{shaw:98, | 
| 823 | author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P. | 
| 824 | and Marshall, J.}, | 
| 825 | title =        {A comparison of implicitly parallel multi-threaded and | 
| 826 | data-parallel implementations of an ocean model based | 
| 827 | on the Navier-Stokes equations}, | 
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| 830 | volume =       48, | 
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| 832 | pages =        {1-51} | 
| 833 | } | 
| 834 |  | 
| 835 | @Article{marshall:98, | 
| 836 | author =       {J. Marshall and H. Jones and C. Hill}, | 
| 837 | title =        {Efficient ocean modeling using non-hydrostatic algorithms}, | 
| 838 | journal =      {JMR}, | 
| 839 | year =         1998, | 
| 840 | volume =       18, | 
| 841 | pages =        {115-134} | 
| 842 | } | 
| 843 |  | 
| 844 | @Article{mjn:99, | 
| 845 | author =       {Marshall, J., Jamous, D and J. Nilsson}, | 
| 846 | title =        {Reconciling `thermodynamic' and `dynamic' methods of | 
| 847 | computation of water-mass transformation rates}, | 
| 848 | journal =      {DSR}, | 
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| 852 | } | 
| 853 |  | 
| 854 | @Article{ms:99, | 
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| 856 | title =        {Open ocean deep convection: observations, models and theory}, | 
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| 862 | } | 
| 863 |  | 
| 864 | @Article{adcroft:99, | 
| 865 | author =       {Adcroft, A., Hill C. and J. Marshall}, | 
| 866 | title =        {A new treatment of the Coriolis terms in C-grid models | 
| 867 | at both high and low resolutions}, | 
| 868 | journal =      {MWR}, | 
| 869 | year =         1999, | 
| 870 | volume =       127, | 
| 871 | pages =        {1928-1936} | 
| 872 | } | 
| 873 |  | 
| 874 | @InProceedings{hill:99, | 
| 875 | author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, | 
| 876 | title =        {A Strategy for Terascale Climate Modeling}, | 
| 877 | booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology}, | 
| 878 | year =         1999, | 
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| 880 | publisher =    {World Scientific}, | 
| 881 | } | 
| 882 |  | 
| 883 | @Article{wardle:00, | 
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| 934 | title =        {Numerical Algorithms for use in a Dynamical Model of the | 
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