| 1 | @string{arfm    = {Annu.~Rev.~Fluid Mech.}} | 
| 2 | @string{bams    = {Bull.~Am.~Met.~Soc.}} | 
| 3 | @string{blm     = {Bound.~Layer~Meteorol.}} | 
| 4 | @string{jgr     = {J.~Geophys.~Res.}} | 
| 5 | @string{ijrs    = {Int.~J.~Remote Sensing}} | 
| 6 | @string{jas     = {J.~Atmos.~Sci.}} | 
| 7 | @string{jpo     = {J.~Phys.~Oceanogr.}} | 
| 8 | @string{jclim   = {J.~Clim.}} | 
| 9 | @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}} | 
| 10 | @string{jfm     = {J.~Fluid Mech.}} | 
| 11 | @string{jaot    = {J.~Atmos.~Ocean.~Technol.}} | 
| 12 | @string{jms     = {J.~Mar.~Sys.}} | 
| 13 | @string{gaos    = {Global Atmos.~Ocean System}} | 
| 14 | @string{grl     = {Geophys.~Res.~Lett.}} | 
| 15 | @string{dsr     = {Deep Sea Res.}} | 
| 16 | @string{dao     = {Dyn.~Atmos.~Oceans}} | 
| 17 | @string{mwr     = {Mon.~Wea.~Rev.}} | 
| 18 | @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}} | 
| 19 | @string{tel     = {Tellus}} | 
| 20 | @string{cup     = {Cambridge University Press}} | 
| 21 | @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}} | 
| 22 | @string{ifremer = {IFREMER/CERSAT}} | 
| 23 | @string{igarss  = {IEEE Press, Piscataway, N.J., USA}} | 
| 24 | @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}} | 
| 25 | @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}} | 
| 26 | @string{mpi     = {MPI f\"ur Meteorologie}} | 
| 27 | @string{ecmwf   = {ECMWF}} | 
| 28 | @string{estec   = {European Space Research and Technology Centre | 
| 29 | (ESTEC)}} | 
| 30 | @string{esa     = {European Space Agency (ESA)}} | 
| 31 |  | 
| 32 | @Article{bis-eta:92, | 
| 33 | author         = {C.H. Bishof and G.F. Corliss and L. Green and | 
| 34 | A. Griewank and K. Haigler and P. Newman}, | 
| 35 | year           = 1992, | 
| 36 | title          = {Automatic differentiation of advanced GFD codes | 
| 37 | for multidisciplinary design}, | 
| 38 | journal        = {Journal on Computing Systems in Engineering}, | 
| 39 | volume         = {3}, | 
| 40 | pages          = {625--638}, | 
| 41 | } | 
| 42 |  | 
| 43 | @incollection{bis:94, | 
| 44 | author         = {C.H. Bishof}, | 
| 45 | year           = 1994, | 
| 46 | title          = {Automatic differentiation, tangent linear models | 
| 47 | and pseudo-adjoints}, | 
| 48 | booktitle      = {High Performance Computing in the Geosciences}, | 
| 49 | series         = {Series C: Mathematical and Physical Sciences}, | 
| 50 | pages          = {59--80}, | 
| 51 | editor         = {F.X. {Le Dimet}}, | 
| 52 | publisher      = {Kluwer}, | 
| 53 | address        = {Dordrecht, NL}, | 
| 54 | } | 
| 55 |  | 
| 56 | @techreport{bis-eta:94, | 
| 57 | author         = {C. Bishof and A. Carle and P. Khademi and | 
| 58 | A. Maurer}, | 
| 59 | year           = 1994, | 
| 60 | title          = {The ADIFOR 2.0 system for the automatic | 
| 61 | differentiation of FORTRAN 77 programs}, | 
| 62 | institution    = {Argonne National Laboratory, Mathematics and | 
| 63 | Computer Science Division}, | 
| 64 | type           = {Argonne Preprint}, | 
| 65 | number         = {ANL-MCS-P981-1194}, | 
| 66 | address        = {ANL; 9700 South Cass Ave.; | 
| 67 | Argonne (ILL), 90439; USA}, | 
| 68 | note           = {http://www.mcs.anl.gov/autodiff/}, | 
| 69 | } | 
| 70 |  | 
| 71 | @techreport{bis-roh:97, | 
| 72 | author         = {C. Bishof and L. Roh}, | 
| 73 | year           = 1997, | 
| 74 | title          = {ADIC: An extensible automatic differentiation tool | 
| 75 | for ANSI-C}, | 
| 76 | institution    = {Argonne National Laboratory, Mathematics and | 
| 77 | Computer Science Division}, | 
| 78 | type           = {Argonne Preprint}, | 
| 79 | number         = {ANL-MCS-P626-1196}, | 
| 80 | address        = {ANL; 9700 South Cass Ave.; | 
| 81 | Argonne (ILL), 90439; USA}, | 
| 82 | note           = {http://www.mcs.anl.gov/autodiff/}, | 
| 83 | } | 
| 84 |  | 
| 85 | @Article{cou-tal:87, | 
| 86 | author         = {P. Courtier and O. Talagrand}, | 
| 87 | year           = 1987, | 
| 88 | title          = {Variational assimilation of meteorological | 
| 89 | observations with the adjoint vorticity equation. | 
| 90 | II: Numerical results}, | 
| 91 | journal        = qjrms, | 
| 92 | volume         = {113}, | 
| 93 | pages          = {1329--1347}, | 
| 94 | } | 
| 95 |  | 
| 96 | @Article{cou-tal:90, | 
| 97 | author         = {P. Courtier and O. Talagrand}, | 
| 98 | year           = 1990, | 
| 99 | title          = {Variational assimilation of meteorological | 
| 100 | observations with direct and adjoint shallow-water | 
| 101 | equations}, | 
| 102 | journal        = tel, | 
| 103 | volume         = {42A}, | 
| 104 | pages          = {531--549}, | 
| 105 | } | 
| 106 |  | 
| 107 | @Article{cou-eta:94, | 
| 108 | author         = {P. Courtier and J.-N. Th{\'e}paut and | 
| 109 | A. Hollingsworth}, | 
| 110 | year           = 1994, | 
| 111 | title          = {A strategy for operational implementation of | 
| 112 | 4-D-VAR using an incremental approach}, | 
| 113 | journal        = qjrms, | 
| 114 | volume         = {120}, | 
| 115 | pages          = {1367--1387}, | 
| 116 | } | 
| 117 |  | 
| 118 | @Article{err:97, | 
| 119 | author         = {R.M. Errico}, | 
| 120 | year           = 1997, | 
| 121 | title          = {What is an adjoint model}, | 
| 122 | journal        = bams, | 
| 123 | volume         = {78}, | 
| 124 | pages          = {2577--2591}, | 
| 125 | } | 
| 126 |  | 
| 127 | @Article{far-moo:92, | 
| 128 | author         = {B.F. Farrell and A.M. Moore}, | 
| 129 | year           = {1992}, | 
| 130 | title          = {An adjoint method for obtaining the most rapidly | 
| 131 | growing perturbation to oceanic flows}, | 
| 132 | journal        = jpo, | 
| 133 | volume         = {22}, | 
| 134 | pages          = {338--349}, | 
| 135 | } | 
| 136 |  | 
| 137 | @Article{far-ioa:96a, | 
| 138 | author         = {B.F. Farrell and P. Ioannou}, | 
| 139 | year           = {1996a}, | 
| 140 | title          = {Generalized stability theory. Part I: | 
| 141 | Autonomous operators}, | 
| 142 | journal        = jas, | 
| 143 | volume         = {53}, | 
| 144 | pages          = {2025--2040}, | 
| 145 | } | 
| 146 |  | 
| 147 | @Article{far-ioa:96b, | 
| 148 | author         = {B.F. Farrell and P. Ioannou}, | 
| 149 | year           = {1996b}, | 
| 150 | title          = {Generalized stability theory. Part I: | 
| 151 | Nonautonomous operators}, | 
| 152 | journal        = jas, | 
| 153 | volume         = {53}, | 
| 154 | pages          = {2041--2053}, | 
| 155 | } | 
| 156 |  | 
| 157 | @techreport{fau-pap:98, | 
| 158 | author         = {C. Faure and Y. Papegay}, | 
| 159 | year           = 1998, | 
| 160 | title          = {Odyss{\'e}e User's Guide. Version 1.7}, | 
| 161 | institution    = {Institut National de Recherche en Informatique | 
| 162 | et en Automatique}, | 
| 163 | type           = {Rapport Technique}, | 
| 164 | number         = {0224}, | 
| 165 | address        = {INRIA; 2004, route des Luciolis, B.P. 93; | 
| 166 | 06902 Sophia Antipolis Cedex; France}, | 
| 167 | note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html}, | 
| 168 | } | 
| 169 |  | 
| 170 | @Article{fau:00, | 
| 171 | author         = {C. Faure}, | 
| 172 | year           = {2000}, | 
| 173 | title          = {Adjoining strategies for multi-layered programs}, | 
| 174 | journal        = {Optimisation Methods and Software}, | 
| 175 | note           = {in press}, | 
| 176 | } | 
| 177 |  | 
| 178 | @Article{gen-mcw:90, | 
| 179 | author         = {P.R. Gent and J.C. McWilliams}, | 
| 180 | year           = 1990, | 
| 181 | title          = {Isopycnal mixing in ocean circulation models}, | 
| 182 | journal        = jpo, | 
| 183 | volume         = {20}, | 
| 184 | pages          = {150--155}, | 
| 185 | } | 
| 186 |  | 
| 187 | @Article{gen-eta:95, | 
| 188 | author         = {P.R. Gent and J. Willebrand and T.J. McDougall | 
| 189 | and J.C. McWilliams}, | 
| 190 | year           = 1995, | 
| 191 | title          = {Parameterizing eddy-induced tracer transports in | 
| 192 | ocean circulation models}, | 
| 193 | journal        = jpo, | 
| 194 | volume         = {25}, | 
| 195 | pages          = {463--474}, | 
| 196 | } | 
| 197 |  | 
| 198 | @Article{gie-kam:98, | 
| 199 | author         = {R. Giering and T. Kaminski}, | 
| 200 | year           = 1998, | 
| 201 | title          = {Recipes for adjoint code construction}, | 
| 202 | journal        = {ACM Transactions on Mathematical Software}, | 
| 203 | volume         = 24, | 
| 204 | pages          = {437--474}, | 
| 205 | } | 
| 206 |  | 
| 207 | @techreport{gie:99, | 
| 208 | author         = {R. Giering}, | 
| 209 | year           = 1999, | 
| 210 | title          = {Tangent linear and Adjoint Model Compiler. | 
| 211 | Users manual 1.4 (TAMC Version 5.2)}, | 
| 212 | institution    = {Massachusetts Institute of Technology}, | 
| 213 | type           = {Report}, | 
| 214 | number         = {~}, | 
| 215 | address        = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA) | 
| 216 | 02139; USA}, | 
| 217 | note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html}, | 
| 218 | } | 
| 219 |  | 
| 220 | @incollection{gie:00, | 
| 221 | author         = {R. Giering}, | 
| 222 | editor         = {P. Kasibhatla and M. Heimann and P. Rayner and | 
| 223 | N. Mahowald and R.G. Prinn and D.E. Hartley}, | 
| 224 | year           = 2000, | 
| 225 | booktitle      = {Inverse methods in global biogeochemical cycles}, | 
| 226 | title          = {Tangent linear and adjoint biogeochemical models}, | 
| 227 | publisher      = {American Geophysical Union}, | 
| 228 | series         = {Geophysical Monograph}, | 
| 229 | volume         = {114}, | 
| 230 | address        = {Washington, DC}, | 
| 231 | pages          = {33--48}, | 
| 232 | } | 
| 233 |  | 
| 234 | @Article{gil-lem:89, | 
| 235 | author         = {J.C. Gilbert and C. Lemar\'echal}, | 
| 236 | year           = 1989, | 
| 237 | title          = {Some numerical experiments with variable-storage | 
| 238 | quasi-Newton algorithms}, | 
| 239 | journal        = {Math. Programming}, | 
| 240 | volume         = {45}, | 
| 241 | pages          = {407--435}, | 
| 242 | } | 
| 243 |  | 
| 244 | @book{gil-eta:81, | 
| 245 | author         = {P.E. Gill and W. Murray and M.H. Wright}, | 
| 246 | title          = {Practical optimization}, | 
| 247 | year           = 1981, | 
| 248 | publisher      = {Academic Press}, | 
| 249 | address        = {London}, | 
| 250 | pages          = {401 pp.}, | 
| 251 | } | 
| 252 |  | 
| 253 | @book{gri:00, | 
| 254 | author         = {A. Griewank}, | 
| 255 | title          = {Evaluating Derivatives. Principles and Techniques | 
| 256 | of Algorithmic Differentiation}, | 
| 257 | year           = 2000, | 
| 258 | series         = {Frontiers in Applied Mathematics}, | 
| 259 | volume         = {19}, | 
| 260 | publisher      = {SIAM}, | 
| 261 | address        = {Philadelphia}, | 
| 262 | pages          = {369 pp.}, | 
| 263 | } | 
| 264 |  | 
| 265 | @Article{hal-eta:82, | 
| 266 | author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger}, | 
| 267 | year           = 1982, | 
| 268 | title          = {Sensitivity analysis of a radiative-convective | 
| 269 | model by the adjoint method}, | 
| 270 | journal        = jas, | 
| 271 | volume         = {39}, | 
| 272 | pages          = {2038--3050}, | 
| 273 | } | 
| 274 |  | 
| 275 | @Article{hil-eta:01, | 
| 276 | author         = {C. Hill and M. Follows and V. Bugnion and | 
| 277 | J. Marshall}, | 
| 278 | year           = {2001}, | 
| 279 | title          = {Spatial and Temporal Impacts of ocean general | 
| 280 | circulation on carbon sequestration}, | 
| 281 | journal        = {journal ???}, | 
| 282 | note           = {submitted}, | 
| 283 | } | 
| 284 |  | 
| 285 | @book{kas-eta:00, | 
| 286 | author         = {P. Kasibhatla and M. Heimann and P. Rayner and | 
| 287 | N. Mahowald and R.G. Prinn and D.E. Hartley}, | 
| 288 | year           = 2000, | 
| 289 | title          = {Inverse methods in global biogeochemical cycles}, | 
| 290 | publisher      = {American Geophysical Union}, | 
| 291 | series         = {Geophysical Monograph}, | 
| 292 | volume         = {114}, | 
| 293 | address        = {Washington, DC}, | 
| 294 | pages          = {324 pp.}, | 
| 295 | } | 
| 296 |  | 
| 297 | @Article{lar-eta:94, | 
| 298 | author         = {W.G. Large and J.C. McWilliams and S.C. Doney}, | 
| 299 | year           = 1994, | 
| 300 | title          = {Oceanic vertical mixing: A review and a model | 
| 301 | with nonlocal boundary layer parameterization}, | 
| 302 | journal        = {Rev.~Geophys.}, | 
| 303 | volume         = {32}, | 
| 304 | pages          = {363--403}, | 
| 305 | } | 
| 306 |  | 
| 307 | @Article{lar-eta:97, | 
| 308 | author         = {W.G. Large and G. Danabasoglu and S.C. Doney | 
| 309 | and J.C. McWilliams}, | 
| 310 | year           = 1997, | 
| 311 | title          = {Sensitivity to surface forcing and boundary layer | 
| 312 | mixing in a global ocean model: annual-mean | 
| 313 | climatology}, | 
| 314 | journal        = jpo, | 
| 315 | volume         = {27}, | 
| 316 | pages          = {2418--2447}, | 
| 317 | } | 
| 318 |  | 
| 319 | @Article{led-tal:86, | 
| 320 | author         = {F.-X. {Le Dimet} and O. Talagrand}, | 
| 321 | year           = 1986, | 
| 322 | title          = {Variational algorithms for analysis and | 
| 323 | assimilation of meteorological observations: | 
| 324 | theoretical aspects}, | 
| 325 | journal        = tel, | 
| 326 | volume         = {38A}, | 
| 327 | pages          = {97--110}, | 
| 328 | } | 
| 329 |  | 
| 330 | @Article{lew-der:85, | 
| 331 | author         = {J. Lewis and J. Derber}, | 
| 332 | year           = {1985}, | 
| 333 | title          = {The use of adjoint equations to solve a variational | 
| 334 | adjustment problem with advective constraints}, | 
| 335 | journal        = {Tellus}, | 
| 336 | volume         = {37A}, | 
| 337 | pages          = {309--322}, | 
| 338 | } | 
| 339 |  | 
| 340 | @techreport{lon:88, | 
| 341 | author         = {R.B. Long}, | 
| 342 | year           = 1988, | 
| 343 | title          = {Notes on assimilating observations into | 
| 344 | numerical models}, | 
| 345 | institution    = {Delft Hydraulics}, | 
| 346 | type           = {Report}, | 
| 347 | number         = {~}, | 
| 348 | pages          = {38 pp.}, | 
| 349 | address        = {Delft (NL)}, | 
| 350 | } | 
| 351 |  | 
| 352 | @Article{maro-wun:93, | 
| 353 | author         = {J. Marotzke and C. Wunsch}, | 
| 354 | year           = 1993, | 
| 355 | title          = {Finding the steady state of a general circulation | 
| 356 | model through data assimilation: | 
| 357 | Application to the North Atlantic Ocean}, | 
| 358 | journal        = jgr, | 
| 359 | volume         = {98, C11}, | 
| 360 | pages          = {20,149--20,167}, | 
| 361 | } | 
| 362 |  | 
| 363 | @Article{maro-eta:99, | 
| 364 | author         = {J. Marotzke and R. Giering and K.Q. Zhang and | 
| 365 | D. Stammer and C. Hill and T. Lee}, | 
| 366 | year           = 1999, | 
| 367 | title          = {Construction of the adjoint MIT ocean general | 
| 368 | circulation model and application to Atlantic heat | 
| 369 | transport variability}, | 
| 370 | journal        = jgr, | 
| 371 | volume         = {104, C12}, | 
| 372 | pages          = {29,529--29,547}, | 
| 373 | } | 
| 374 |  | 
| 375 | @Article{mars-eta:97a, | 
| 376 | author         = {J. Marshall and C. Hill and L. Perelman and | 
| 377 | A. Adcroft}, | 
| 378 | year           = {1997a}, | 
| 379 | title          = {Hydrostatic, quasi-hydrostatic and | 
| 380 | nonhydrostatic ocean modeling}, | 
| 381 | journal        = jgr, | 
| 382 | volume         = {102, C3}, | 
| 383 | pages          = {5,733--5,752}, | 
| 384 | } | 
| 385 |  | 
| 386 | @Article{mars-eta:97b, | 
| 387 | author         = {J. Marshall and A. Adcroft and C. Hill and | 
| 388 | L. Perelman and C. Heisey}, | 
| 389 | year           = {1997b}, | 
| 390 | title          = {Hydrostatic, quasi-hydrostatic and | 
| 391 | nonhydrostatic ocean modeling}, | 
| 392 | journal        = jgr, | 
| 393 | volume         = {102, C3}, | 
| 394 | pages          = {5,753--5,766}, | 
| 395 | } | 
| 396 |  | 
| 397 | @Article{mars-sha:98, | 
| 398 | author         = {J. Marshall and H. Jones and C. Hill}, | 
| 399 | year           = 1998, | 
| 400 | title          = {Efficient ocean modeling using | 
| 401 | non-hydrostatic algorithms}, | 
| 402 | journal        = jms, | 
| 403 | volume         = {18}, | 
| 404 | pages          = {115--134}, | 
| 405 | } | 
| 406 |  | 
| 407 | @Article{mcw:96, | 
| 408 | author         = {J. McWilliams}, | 
| 409 | year           = 1996, | 
| 410 | title          = {Modeling the oceanic general circulation}, | 
| 411 | journal        = arfm, | 
| 412 | volume         = {28}, | 
| 413 | pages          = {215--248}, | 
| 414 | } | 
| 415 |  | 
| 416 | @Article{res-eta:98, | 
| 417 | author         = {J.M. Restrepo and G.K. Leaf and A. Griewank}, | 
| 418 | year           = 1998, | 
| 419 | title          = {Circumventing storage limitations in variational | 
| 420 | data assimilation studies}, | 
| 421 | journal        = {SIAM J. Sci. Comput.}, | 
| 422 | volume         = {19}, | 
| 423 | pages          = {1586--1605}, | 
| 424 | } | 
| 425 |  | 
| 426 | @Article{ros-eta:93, | 
| 427 | author         = {N. Rostaing and S. Dalmas and A. Galligo}, | 
| 428 | year           = 1993, | 
| 429 | title          = {Automatic differentiation in Odyss{\'e}e}, | 
| 430 | journal        = {Tellus}, | 
| 431 | volume         = {45A}, | 
| 432 | pages          = {558--568}, | 
| 433 | } | 
| 434 |  | 
| 435 | @incollection{she-and:89, | 
| 436 | author         = {J. Sheinbaum and D.L.T. Anderson}, | 
| 437 | year           = 1989, | 
| 438 | title          = {Assimilation of XBT data using a variational | 
| 439 | technique}, | 
| 440 | booktitle      = {Oceanic circulation models: | 
| 441 | Combining data and dynamics}, | 
| 442 | pages          = {257--285}, | 
| 443 | series         = {NATO ASI Series}, | 
| 444 | volume         = {C 284}, | 
| 445 | editor         = {{D.L.T. Anderson and J. Willebrand}}, | 
| 446 | publisher      = {Springer-Verlag}, | 
| 447 | address        = {Berlin (Germany)}, | 
| 448 | } | 
| 449 |  | 
| 450 | @techreport{sta-eta:97, | 
| 451 | author         = {D. Stammer and C. Wunsch and R. Giering and | 
| 452 | Q. Zhang and J. Marotzke an J. Marshall and | 
| 453 | C. Hill}, | 
| 454 | year           = 1997, | 
| 455 | title          = {The global ocean circulation estimated from | 
| 456 | TOPEX/POSEIDON altimetry and a general circulation | 
| 457 | model}, | 
| 458 | institution    = {Center for Global Change Science, Massachusetts | 
| 459 | Institute of Technology}, | 
| 460 | type           = {Technical Report}, | 
| 461 | number         = {49}, | 
| 462 | pages          = {40 pp.}, | 
| 463 | address        = {Cambridge (MA), USA}, | 
| 464 | } | 
| 465 |  | 
| 466 | @Article{sta-eta:01, | 
| 467 | author         = {D. Stammer and C. Wunsch and R. Giering and | 
| 468 | C. Eckert and P. Heimbach and J. Marotzke and | 
| 469 | A. Adcroft and C. Hill and J. Marshall}, | 
| 470 | year           = 2001, | 
| 471 | title          = {The global ocean circulation during 1992 -- 1997, | 
| 472 | estimated from ocean observations and a general | 
| 473 | circulation model}, | 
| 474 | journal        = jgr, | 
| 475 | note           = {submitted}, | 
| 476 | } | 
| 477 |  | 
| 478 | @Article{tal-cou:87, | 
| 479 | author         = {O. Talagrand and P. Courtier}, | 
| 480 | year           = 1987, | 
| 481 | title          = {Variational assimilation of meteorological | 
| 482 | observations with the adjoint vorticity equation. | 
| 483 | I: Theory}, | 
| 484 | journal        = qjrms, | 
| 485 | volume         = {113}, | 
| 486 | pages          = {1311--1328}, | 
| 487 | } | 
| 488 |  | 
| 489 | @Article{tal:97, | 
| 490 | author         = {O. Talagrand}, | 
| 491 | year           = 1997, | 
| 492 | title          = {Assimilation of observations, an introduction}, | 
| 493 | journal        = {J.~Meteor.~Soc.~Japan}, | 
| 494 | volume         = {75}, | 
| 495 | pages          = {191--209}, | 
| 496 | } | 
| 497 |  | 
| 498 | @book{tar:87, | 
| 499 | author         = {A. Tarantola}, | 
| 500 | title          = {Inverse Problem Theory: Methods for data fitting | 
| 501 | and model parameter estimation}, | 
| 502 | year           = 1987, | 
| 503 | publisher      = {Elsevier}, | 
| 504 | address        = {Amsterdam}, | 
| 505 | pages          = {629 pp.}, | 
| 506 | } | 
| 507 |  | 
| 508 | @techreport{tha:87, | 
| 509 | author         = {W.C. Thacker}, | 
| 510 | year           = 1987, | 
| 511 | title          = {Three lectures on fitting numerical models to | 
| 512 | observations}, | 
| 513 | institution    = {GKSS}, | 
| 514 | type           = {Report}, | 
| 515 | number         = {87/E/65}, | 
| 516 | pages          = {64 pp.}, | 
| 517 | address        = {Geesthacht (D)}, | 
| 518 | } | 
| 519 |  | 
| 520 | @Article{tha-lon:88, | 
| 521 | author         = {W.C. Thacker and R.B. Long}, | 
| 522 | year           = 1988, | 
| 523 | title          = {Fitting dynamics to data}, | 
| 524 | journal        = jgr, | 
| 525 | volume         = {93, C2}, | 
| 526 | pages          = {1,227--1,240}, | 
| 527 | } | 
| 528 |  | 
| 529 | @Article{tha:88, | 
| 530 | author         = {W.C. Thacker}, | 
| 531 | year           = 1988, | 
| 532 | title          = {Fitting models to inadequate data by enforcing | 
| 533 | spatial and temporal smoothness}, | 
| 534 | journal        = jgr, | 
| 535 | volume         = {93}, | 
| 536 | pages          = {10,655--10,665}, | 
| 537 | } | 
| 538 |  | 
| 539 | @Article{tha:89, | 
| 540 | author         = {W.C. Thacker}, | 
| 541 | year           = 1989, | 
| 542 | title          = {The role of the Hessian matrix in fitting models | 
| 543 | to measurements}, | 
| 544 | journal        = jgr, | 
| 545 | volume         = {94, C5}, | 
| 546 | pages          = {6,177--6,196}, | 
| 547 | } | 
| 548 |  | 
| 549 | @Article{tha-rag:94, | 
| 550 | author         = {W.C. Thacker and R. Raghunath}, | 
| 551 | year           = 1994, | 
| 552 | title          = {The rigid lid's contribution to the ill-conditioning | 
| 553 | of oceanic inverse problems}, | 
| 554 | journal        = jgr, | 
| 555 | volume         = {99, C5}, | 
| 556 | pages          = {10,131--10,141}, | 
| 557 | } | 
| 558 |  | 
| 559 | @Article{tzi-tha:89, | 
| 560 | author         = {E. Tziperman and W.C. Thacker}, | 
| 561 | year           = {1989}, | 
| 562 | title          = {An optimal control / adjoint equation approach | 
| 563 | to studying the ocean general circulation}, | 
| 564 | journal        = jpo, | 
| 565 | volume         = {19}, | 
| 566 | pages          = {1471--1485}, | 
| 567 | } | 
| 568 |  | 
| 569 | @Article{tzi-eta:92a, | 
| 570 | author         = {E. Tziperman and W.C. Thacker and R.B. Long and | 
| 571 | S. Hwang}, | 
| 572 | year           = {1992a}, | 
| 573 | title          = {Oceanic data analysis using a general circulation | 
| 574 | model. I: Simulations}, | 
| 575 | journal        = jpo, | 
| 576 | volume         = {22}, | 
| 577 | pages          = {1434--1457}, | 
| 578 | } | 
| 579 |  | 
| 580 | @Article{tzi-eta:92b, | 
| 581 | author         = {E. Tziperman and W.C. Thacker and R.B. Long and | 
| 582 | S. Hwang and S.R. Rintoul}, | 
| 583 | year           = {1992b}, | 
| 584 | title          = {Oceanic data analysis using a general circulation | 
| 585 | model. I: A North Atlantic model}, | 
| 586 | journal        = jpo, | 
| 587 | volume         = {22}, | 
| 588 | pages          = {1458--1485}, | 
| 589 | } | 
| 590 |  | 
| 591 | @book{wun:96, | 
| 592 | author         = {C. Wunsch}, | 
| 593 | title          = {The ocean circulation inverse problem}, | 
| 594 | year           = 1996, | 
| 595 | publisher      = cup, | 
| 596 | address        = {Cambridge (UK)}, | 
| 597 | pages          = {442 pp.}, | 
| 598 | } | 
| 599 |  | 
| 600 | @Article{zha-mar:99, | 
| 601 | author         = {K.Q. Zhang and J. Marotzke}, | 
| 602 | year           = 1999, | 
| 603 | title          = {The importance of open-boundary estimation for an | 
| 604 | Indian Ocean GCM-data synthesis}, | 
| 605 | journal        = {J.~Marine Res.}, | 
| 606 | volume         = {57}, | 
| 607 | pages          = {305--334}, | 
| 608 | } | 
| 609 |  | 
| 610 |  | 
| 611 | @InCollection{hill:95, | 
| 612 | author =       {Hill, C. and J. Marshall}, | 
| 613 | title =        {Application of a Parallel Navier-Stokes Model to | 
| 614 | Ocean Circulation in Parallel Computational Fluid | 
| 615 | Dynamics}, | 
| 616 | booktitle =    {Implementations and Results Using Parallel | 
| 617 | Computers}, | 
| 618 | pages =        {545-552}, | 
| 619 | publisher =    {Elsevier Science B.V.: New York}, | 
| 620 | year =         1995, | 
| 621 | editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor} | 
| 622 | } | 
| 623 |  | 
| 624 |  | 
| 625 | @Article{marshall:97a, | 
| 626 | author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, | 
| 627 | title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean | 
| 628 | modeling}, | 
| 629 | journal =      {JGR}, | 
| 630 | year =         1997, | 
| 631 | volume =       102, | 
| 632 | number =       {C3}, | 
| 633 | pages =        {5733-5752} | 
| 634 | } | 
| 635 |  | 
| 636 | @Article{marshall:97b, | 
| 637 | author =       {Marshall, J., A. Adcroft, C. Hill, L. Perelman, and C. Heise}, | 
| 638 | title =        {A finite-volume, incompressible Navier Stokes model for | 
| 639 | studies of the ocean on parallel computers}, | 
| 640 | journal =      {JGR}, | 
| 641 | year =         1997, | 
| 642 | volume =       102, | 
| 643 | number =       {C3}, | 
| 644 | pages =        {5753-5766} | 
| 645 | } | 
| 646 |  | 
| 647 | @Article{adcroft:97, | 
| 648 | author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall}, | 
| 649 | title =        {Representation of topography by shaved cells in a height | 
| 650 | coordinate ocean model}, | 
| 651 | journal =      {MWR}, | 
| 652 | year =         1997, | 
| 653 | volume =       125, | 
| 654 | pages =        {2293-2315} | 
| 655 | } | 
| 656 |  | 
| 657 | @Article{visbeck:97, | 
| 658 | author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, | 
| 659 | title =        {Specification of eddy transfer coefficients in | 
| 660 | coarse-resolution ocean circulation models}, | 
| 661 | journal =      {JPO}, | 
| 662 | year =         1997, | 
| 663 | volume =       27, | 
| 664 | number =       3, | 
| 665 | pages =        {381-402} | 
| 666 | } | 
| 667 |  | 
| 668 | @Article{shaw:98, | 
| 669 | author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P. | 
| 670 | and Marshall, J.}, | 
| 671 | title =        {A comparison of implicitly parallel multi-threaded and | 
| 672 | data-parallel implementations of an ocean model based | 
| 673 | on the Navier-Stokes equations}, | 
| 674 | journal =      {J. of Parallel and Distributed Computing}, | 
| 675 | year =         1998, | 
| 676 | volume =       48, | 
| 677 | number =       1, | 
| 678 | pages =        {1-51} | 
| 679 | } | 
| 680 |  | 
| 681 | @Article{marshall:98, | 
| 682 | author =       {Marshall, J., Jones, H. and C. Hill}, | 
| 683 | title =        {Efficient ocean modeling using non-hydrostatic algorithms}, | 
| 684 | journal =      {JMR}, | 
| 685 | year =         1998, | 
| 686 | volume =       18, | 
| 687 | pages =        {115-134} | 
| 688 | } | 
| 689 |  | 
| 690 | @Article{mjn:99, | 
| 691 | author =       {Marshall, J., Jamous, D and J. Nilsson}, | 
| 692 | title =        {Reconciling `thermodynamic' and `dynamic' methods of | 
| 693 | computation of water-mass transformation rates}, | 
| 694 | journal =      {DSR}, | 
| 695 | year =         1999, | 
| 696 | volume =       46, | 
| 697 | pages =        {545-572} | 
| 698 | } | 
| 699 |  | 
| 700 | @Article{ms:99, | 
| 701 | author =       {Marshall, J and F. Schott}, | 
| 702 | title =        {Open ocean deep convection: observations, models and theory}, | 
| 703 | journal =      {Rev. Geophys.}, | 
| 704 | year =         1999, | 
| 705 | volume =       37, | 
| 706 | number =       1, | 
| 707 | pages =        {1-64} | 
| 708 | } | 
| 709 |  | 
| 710 | @Article{adcroft:99, | 
| 711 | author =       {Adcroft, A., Hill C. and J. Marshall}, | 
| 712 | title =        {A new treatment of the Coriolis terms in C-grid models | 
| 713 | at both high and low resolutions}, | 
| 714 | journal =      {MWR}, | 
| 715 | year =         1999, | 
| 716 | volume =       127, | 
| 717 | pages =        {1928-1936} | 
| 718 | } | 
| 719 |  | 
| 720 | @InProceedings{hill:99, | 
| 721 | author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, | 
| 722 | title =        {A Strategy for Terascale Climate Modeling}, | 
| 723 | booktitle =    {In Proceedings of the Eight ECMWF Workshop on the Use of Parallel Processors in Meteorology}, | 
| 724 | year =         1999 | 
| 725 | } | 
| 726 |  | 
| 727 | @Article{wardle:00, | 
| 728 | author =       {Wardle R. and Marshall J.}, | 
| 729 | title =        {Representation of eddies in primitive equation models by a PV flux}, | 
| 730 | journal =      {JPO}, | 
| 731 | year =         2000, | 
| 732 | volume =       30, | 
| 733 | number =       10, | 
| 734 | pages =        {2481-2503} | 
| 735 | } | 
| 736 |  | 
| 737 | @Article{ac:02, | 
| 738 | author =       {Adcroft, A. and J.-M. Campin}, | 
| 739 | title =        {Comparison of finite volume schemes and direct-space-time | 
| 740 | methods for ocean circulation models}, | 
| 741 | journal =      {OM}, | 
| 742 | year =         2002, | 
| 743 | note =         {in preparation} | 
| 744 | } | 
| 745 |  | 
| 746 | @Article{adcroft:02, | 
| 747 | author =       {Adcroft et al.}, | 
| 748 | title =        {Energy conversion in discrete numerical models}, | 
| 749 | journal =      {OM}, | 
| 750 | year =         2002, | 
| 751 | note =         {in preparation} | 
| 752 | } | 
| 753 |  | 
| 754 | @InCollection{arakawa:77, | 
| 755 | author =       {Arakawa, A. and Lamb, V.}, | 
| 756 | title =        {Computational Design of the Basic Dynamical Processes of | 
| 757 | the UCLA General Circulation Model}, | 
| 758 | booktitle =    {Methods in Computational Physics}, | 
| 759 | pages =        {174-267}, | 
| 760 | publisher =    {Academic Press}, | 
| 761 | year =         1977, | 
| 762 | volume =       17 | 
| 763 | } | 
| 764 |  | 
| 765 | @Article{adcroft:98, | 
| 766 | author =       {Adcroft, A. and Marshall, D.}, | 
| 767 | title =        {How slippery are piecewise-constant coastlines in numerical | 
| 768 | ocean models?}, | 
| 769 | journal =      {Tellus}, | 
| 770 | year =         1998, | 
| 771 | volume =       50, | 
| 772 | number =       1, | 
| 773 | pages =        {95-108} | 
| 774 | } | 
| 775 |  | 
| 776 | @PhdThesis{adcroft:95, | 
| 777 | author =       {Adcroft, A.}, | 
| 778 | title =        {Numerical Algorithms for use in a Dynamical Model of the | 
| 779 | Ocean}, | 
| 780 | school =       {Imperial College, London}, | 
| 781 | year =         1995 | 
| 782 | } | 
| 783 |  | 
| 784 | @Article{griffies:00, | 
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| 786 | title =        {Biharmonic friction with a Smagorinsky-like viscosity for | 
| 787 | use in large-scale eddy-permitting ocean models}, | 
| 788 | journal =      {MWR}, | 
| 789 | year =         2000, | 
| 790 | volume =       128, | 
| 791 | number =       8, | 
| 792 | pages =        {2935-2946} | 
| 793 | } | 
| 794 |  | 
| 795 | @Article{wajsowicz:93, | 
| 796 | author =       {Wajsowicz, R.}, | 
| 797 | title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR | 
| 798 | FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION}, | 
| 799 | journal =      {JCP}, | 
| 800 | year =         1993, | 
| 801 | volume =       105, | 
| 802 | number =       2, | 
| 803 | pages =        {333-338} | 
| 804 | } | 
| 805 |  | 
| 806 | @Article{campin:02, | 
| 807 | author =       {Campin et al.}, | 
| 808 | title =        {Conservation of properties in a free-surface model}, | 
| 809 | journal =      {OM}, | 
| 810 | year =         2002, | 
| 811 | note =         {in preparation} | 
| 812 | } | 
| 813 |  | 
| 814 | @Article{dm:95, | 
| 815 | author =       {Danabasoglu, G. and McWilliams J.C.}, | 
| 816 | title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports}, | 
| 817 | journal =      {JC}, | 
| 818 | year =         1995, | 
| 819 | volume =       8, | 
| 820 | number =       12, | 
| 821 | pages =        {2967-2987} | 
| 822 | } | 
| 823 |  | 
| 824 | @Article{ldd:97, | 
| 825 | author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.}, | 
| 826 | title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology}, | 
| 827 | journal =      {JPO}, | 
| 828 | year =         1997, | 
| 829 | volume =       27, | 
| 830 | number =       11, | 
| 831 | pages =        {2418-2447} | 
| 832 | } | 
| 833 |  | 
| 834 | @Article{gkw:99, | 
| 835 | author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.}, | 
| 836 | title =        {Mechanisms for spreading of Mediterranean water in | 
| 837 | coarse-resolution numerical models}, | 
| 838 | journal =      {JPO}, | 
| 839 | year =         1999, | 
| 840 | volume =       29, | 
| 841 | number =       8, | 
| 842 | pages =        {1682-1700} | 
| 843 | } | 
| 844 |  | 
| 845 | @Article{roe:85, | 
| 846 | author =       {Roe, P.L.}, | 
| 847 | title =        {Some contributions to the modeling of discontinuous flows}, | 
| 848 | journal =      {Lect. Notes Appl. Math.}, | 
| 849 | year =         1985, | 
| 850 | volume =       22, | 
| 851 | pages =        {163-193} | 
| 852 | } |