| 1 | @string{arfm    = {Annu.~Rev.~Fluid Mech.}} | 
| 2 | @string{bams    = {Bull.~Am.~Met.~Soc.}} | 
| 3 | @string{blm     = {Bound.~Layer~Meteorol.}} | 
| 4 | @string{climd   = {Clim.~Dynamics}} | 
| 5 | @string{jgr     = {J.~Geophys.~Res.}} | 
| 6 | @string{ijrs    = {Int.~J.~Remote Sensing}} | 
| 7 | @string{jas     = {J.~Atmos.~Sci.}} | 
| 8 | @string{jam     = {J.~Appl.~Meteor.}} | 
| 9 | @string{jpo     = {J.~Phys.~Oceanogr.}} | 
| 10 | @string{jclim   = {J.~Clim.}} | 
| 11 | @string{jcp     = {J.~Comput.~Phys.}} | 
| 12 | @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}} | 
| 13 | @string{jfm     = {J.~Fluid Mech.}} | 
| 14 | @string{jaot    = {J.~Atmos.~Ocean.~Technol.}} | 
| 15 | @string{jms     = {J.~Mar.~Sys.}} | 
| 16 | @string{om      = {Ocean Modelling}} | 
| 17 | @string{gaos    = {Global Atmos.~Ocean System}} | 
| 18 | @string{grl     = {Geophys.~Res.~Lett.}} | 
| 19 | @string{dsr     = {Deep Sea Res.}} | 
| 20 | @string{dao     = {Dyn.~Atmos.~Oceans}} | 
| 21 | @string{mwr     = {Mon.~Wea.~Rev.}} | 
| 22 | @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}} | 
| 23 | @string{tel     = {Tellus}} | 
| 24 | @string{cup     = {Cambridge University Press}} | 
| 25 | @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}} | 
| 26 | @string{ifremer = {IFREMER/CERSAT}} | 
| 27 | @string{igarss  = {IEEE Press, Piscataway, N.J., USA}} | 
| 28 | @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}} | 
| 29 | @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}} | 
| 30 | @string{mpi     = {MPI f\"ur Meteorologie}} | 
| 31 | @string{ecmwf   = {ECMWF}} | 
| 32 | @string{estec   = {European Space Research and Technology Centre | 
| 33 | (ESTEC)}} | 
| 34 | @string{esa     = {European Space Agency (ESA)}} | 
| 35 |  | 
| 36 | @Article{bis-eta:92, | 
| 37 | author         = {C.H. Bishof and G.F. Corliss and L. Green and | 
| 38 | A. Griewank and K. Haigler and P. Newman}, | 
| 39 | year           = 1992, | 
| 40 | title          = {Automatic differentiation of advanced GFD codes | 
| 41 | for multidisciplinary design}, | 
| 42 | journal        = {Journal on Computing Systems in Engineering}, | 
| 43 | volume         = {3}, | 
| 44 | pages          = {625--638}, | 
| 45 | } | 
| 46 |  | 
| 47 | @incollection{bis:94, | 
| 48 | author         = {C.H. Bishof}, | 
| 49 | year           = 1994, | 
| 50 | title          = {Automatic differentiation, tangent linear models | 
| 51 | and pseudo-adjoints}, | 
| 52 | booktitle      = {High Performance Computing in the Geosciences}, | 
| 53 | series         = {Series C: Mathematical and Physical Sciences}, | 
| 54 | pages          = {59--80}, | 
| 55 | editor         = {F.X. {Le Dimet}}, | 
| 56 | publisher      = {Kluwer}, | 
| 57 | address        = {Dordrecht, NL}, | 
| 58 | } | 
| 59 |  | 
| 60 | @techreport{bis-eta:94, | 
| 61 | author         = {C. Bishof and A. Carle and P. Khademi and | 
| 62 | A. Maurer}, | 
| 63 | year           = 1994, | 
| 64 | title          = {The ADIFOR 2.0 system for the automatic | 
| 65 | differentiation of FORTRAN 77 programs}, | 
| 66 | institution    = {Argonne National Laboratory, Mathematics and | 
| 67 | Computer Science Division}, | 
| 68 | type           = {Argonne Preprint}, | 
| 69 | number         = {ANL-MCS-P981-1194}, | 
| 70 | address        = {ANL; 9700 South Cass Ave.; | 
| 71 | Argonne (ILL), 90439; USA}, | 
| 72 | note           = {http://www.mcs.anl.gov/autodiff/}, | 
| 73 | } | 
| 74 |  | 
| 75 | @ARTICLE{bugi-hill:06, | 
| 76 | author = {V. Bugnion and C. Hill}, | 
| 77 | title = {Equilibration mechanisms in an adjoint ocean general | 
| 78 | circulation model}, | 
| 79 | journal = {Ocean Dynamics}, | 
| 80 | year = {2006}, | 
| 81 | volume = {56}, | 
| 82 | number = {1}, | 
| 83 | pages = {51-61}, | 
| 84 | doi   = {10.1007/s10236-005-0052-z}, | 
| 85 | } | 
| 86 |  | 
| 87 | @techreport{bis-roh:97, | 
| 88 | author         = {C. Bishof and L. Roh}, | 
| 89 | year           = 1997, | 
| 90 | title          = {ADIC: An extensible automatic differentiation tool | 
| 91 | for ANSI-C}, | 
| 92 | institution    = {Argonne National Laboratory, Mathematics and | 
| 93 | Computer Science Division}, | 
| 94 | type           = {Argonne Preprint}, | 
| 95 | number         = {ANL-MCS-P626-1196}, | 
| 96 | address        = {ANL; 9700 South Cass Ave.; | 
| 97 | Argonne (ILL), 90439; USA}, | 
| 98 | note           = {http://www.mcs.anl.gov/autodiff/}, | 
| 99 | } | 
| 100 |  | 
| 101 | @Article{cou-tal:87, | 
| 102 | author         = {P. Courtier and O. Talagrand}, | 
| 103 | year           = 1987, | 
| 104 | title          = {Variational assimilation of meteorological | 
| 105 | observations with the adjoint vorticity equation. | 
| 106 | II: Numerical results}, | 
| 107 | journal        = qjrms, | 
| 108 | volume         = {113}, | 
| 109 | pages          = {1329--1347}, | 
| 110 | } | 
| 111 |  | 
| 112 | @Article{cou-tal:90, | 
| 113 | author         = {P. Courtier and O. Talagrand}, | 
| 114 | year           = 1990, | 
| 115 | title          = {Variational assimilation of meteorological | 
| 116 | observations with direct and adjoint shallow-water | 
| 117 | equations}, | 
| 118 | journal        = tel, | 
| 119 | volume         = {42A}, | 
| 120 | pages          = {531--549}, | 
| 121 | } | 
| 122 |  | 
| 123 | @Article{cou-eta:94, | 
| 124 | author         = {P. Courtier and J.-N. Th{\'e}paut and | 
| 125 | A. Hollingsworth}, | 
| 126 | year           = 1994, | 
| 127 | title          = {A strategy for operational implementation of | 
| 128 | 4-D-VAR using an incremental approach}, | 
| 129 | journal        = qjrms, | 
| 130 | volume         = {120}, | 
| 131 | pages          = {1367--1387}, | 
| 132 | } | 
| 133 |  | 
| 134 | @ARTICLE{durr:91, | 
| 135 | author = {Dale R. Durran}, | 
| 136 | title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative | 
| 137 | to Leapfrog Time Differencing}, | 
| 138 | journal = mwr, | 
| 139 | year = {1991}, | 
| 140 | volume = {119}, | 
| 141 | pages  = {702-720}, | 
| 142 | } | 
| 143 |  | 
| 144 |  | 
| 145 | @ARTICLE{dutk-etal:06, | 
| 146 | author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall}, | 
| 147 | title = {Controls on ocean productivity and air-sea carbon flux: | 
| 148 | An adjoint model sensitivity study}, | 
| 149 | journal = grl, | 
| 150 | year = {2006}, | 
| 151 | volume = {33}, | 
| 152 | pages  = {L02603}, | 
| 153 | doi    = {10.1029/2005GL024987}, | 
| 154 | } | 
| 155 |  | 
| 156 | @Article{err:97, | 
| 157 | author         = {R.M. Errico}, | 
| 158 | year           = 1997, | 
| 159 | title          = {What is an adjoint model}, | 
| 160 | journal        = bams, | 
| 161 | volume         = {78}, | 
| 162 | pages          = {2577--2591}, | 
| 163 | } | 
| 164 |  | 
| 165 | @Article{far-moo:92, | 
| 166 | author         = {B.F. Farrell and A.M. Moore}, | 
| 167 | year           = {1992}, | 
| 168 | title          = {An adjoint method for obtaining the most rapidly | 
| 169 | growing perturbation to oceanic flows}, | 
| 170 | journal        = jpo, | 
| 171 | volume         = {22}, | 
| 172 | pages          = {338--349}, | 
| 173 | } | 
| 174 |  | 
| 175 | @Article{far-ioa:96a, | 
| 176 | author         = {B.F. Farrell and P. Ioannou}, | 
| 177 | year           = {1996a}, | 
| 178 | title          = {Generalized stability theory. Part I: | 
| 179 | Autonomous operators}, | 
| 180 | journal        = jas, | 
| 181 | volume         = {53}, | 
| 182 | pages          = {2025--2040}, | 
| 183 | } | 
| 184 |  | 
| 185 | @Article{far-ioa:96b, | 
| 186 | author         = {B.F. Farrell and P. Ioannou}, | 
| 187 | year           = {1996b}, | 
| 188 | title          = {Generalized stability theory. Part I: | 
| 189 | Nonautonomous operators}, | 
| 190 | journal        = jas, | 
| 191 | volume         = {53}, | 
| 192 | pages          = {2041--2053}, | 
| 193 | } | 
| 194 |  | 
| 195 | @techreport{fau-pap:98, | 
| 196 | author         = {C. Faure and Y. Papegay}, | 
| 197 | year           = 1998, | 
| 198 | title          = {Odyss{\'e}e User's Guide. Version 1.7}, | 
| 199 | institution    = {Institut National de Recherche en Informatique | 
| 200 | et en Automatique}, | 
| 201 | type           = {Rapport Technique}, | 
| 202 | number         = {0224}, | 
| 203 | address        = {INRIA; 2004, route des Luciolis, B.P. 93; | 
| 204 | 06902 Sophia Antipolis Cedex; France}, | 
| 205 | note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html}, | 
| 206 | } | 
| 207 |  | 
| 208 | @Article{fau:00, | 
| 209 | author         = {C. Faure}, | 
| 210 | year           = {2000}, | 
| 211 | title          = {Adjoining strategies for multi-layered programs}, | 
| 212 | journal        = {Optimisation Methods and Software}, | 
| 213 | note           = {in press}, | 
| 214 | } | 
| 215 |  | 
| 216 | @Article{gen-mcw:90, | 
| 217 | author         = {P.R. Gent and J.C. McWilliams}, | 
| 218 | year           = 1990, | 
| 219 | title          = {Isopycnal mixing in ocean circulation models}, | 
| 220 | journal        = jpo, | 
| 221 | volume         = {20}, | 
| 222 | pages          = {150--155}, | 
| 223 | } | 
| 224 |  | 
| 225 | @Article{gen-eta:95, | 
| 226 | author         = {P.R. Gent and J. Willebrand and T.J. McDougall | 
| 227 | and J.C. McWilliams}, | 
| 228 | year           = 1995, | 
| 229 | title          = {Parameterizing eddy-induced tracer transports in | 
| 230 | ocean circulation models}, | 
| 231 | journal        = jpo, | 
| 232 | volume         = {25}, | 
| 233 | pages          = {463--474}, | 
| 234 | } | 
| 235 |  | 
| 236 | @Article{gie-kam:98, | 
| 237 | author         = {R. Giering and T. Kaminski}, | 
| 238 | year           = 1998, | 
| 239 | title          = {Recipes for adjoint code construction}, | 
| 240 | journal        = {ACM Transactions on Mathematical Software}, | 
| 241 | volume         = 24, | 
| 242 | pages          = {437--474}, | 
| 243 | } | 
| 244 |  | 
| 245 | @techreport{gie:99, | 
| 246 | author         = {R. Giering}, | 
| 247 | year           = 1999, | 
| 248 | title          = {Tangent linear and Adjoint Model Compiler. | 
| 249 | Users manual 1.4 (TAMC Version 5.2)}, | 
| 250 | institution    = {Massachusetts Institute of Technology}, | 
| 251 | type           = {Report}, | 
| 252 | number         = {~}, | 
| 253 | address        = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA) | 
| 254 | 02139; USA}, | 
| 255 | note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html}, | 
| 256 | } | 
| 257 |  | 
| 258 | @incollection{gie:00, | 
| 259 | author         = {R. Giering}, | 
| 260 | editor         = {P. Kasibhatla and M. Heimann and P. Rayner and | 
| 261 | N. Mahowald and R.G. Prinn and D.E. Hartley}, | 
| 262 | year           = 2000, | 
| 263 | booktitle      = {Inverse methods in global biogeochemical cycles}, | 
| 264 | title          = {Tangent linear and adjoint biogeochemical models}, | 
| 265 | publisher      = {American Geophysical Union}, | 
| 266 | series         = {Geophysical Monograph}, | 
| 267 | volume         = {114}, | 
| 268 | address        = {Washington, DC}, | 
| 269 | pages          = {33--48}, | 
| 270 | } | 
| 271 |  | 
| 272 | @Article{gil-lem:89, | 
| 273 | author         = {J.C. Gilbert and C. Lemar\'echal}, | 
| 274 | year           = 1989, | 
| 275 | title          = {Some numerical experiments with variable-storage | 
| 276 | quasi-Newton algorithms}, | 
| 277 | journal        = {Math. Programming}, | 
| 278 | volume         = {45}, | 
| 279 | pages          = {407--435}, | 
| 280 | } | 
| 281 |  | 
| 282 | @book{gil-eta:81, | 
| 283 | author         = {P.E. Gill and W. Murray and M.H. Wright}, | 
| 284 | title          = {Practical optimization}, | 
| 285 | year           = 1981, | 
| 286 | publisher      = {Academic Press}, | 
| 287 | address        = {London}, | 
| 288 | pages          = {401 pp.}, | 
| 289 | } | 
| 290 |  | 
| 291 | @incollection{gri:89, | 
| 292 | author         = {A. Griewank}, | 
| 293 | year           = 1989, | 
| 294 | title          = {On automatic differentiation}, | 
| 295 | booktitle      = {Mathematical Programming: Recent Developments and | 
| 296 | Applications}, | 
| 297 | pages          = {83--108}, | 
| 298 | editor         = {M. Iri and K. Tanabe}, | 
| 299 | publisher      = {Kluwer}, | 
| 300 | address        = {Dordrecht, NL}, | 
| 301 | } | 
| 302 |  | 
| 303 | @Article{gri:92, | 
| 304 | author =       {A.~Griewank}, | 
| 305 | title =        {Achieving logarithmic growth of temporal and spatial | 
| 306 | complexity in reverse {A}utomatic {D}ifferentiation}, | 
| 307 | journal       = {Optimization Methods and Software}, | 
| 308 | year          = {1992}, | 
| 309 | volume        = {1}, | 
| 310 | pages         = {35--54} | 
| 311 | } | 
| 312 |  | 
| 313 | @book{gri:00, | 
| 314 | author         = {A. Griewank}, | 
| 315 | title          = {Evaluating Derivatives. Principles and Techniques | 
| 316 | of Algorithmic Differentiation}, | 
| 317 | year           = 2000, | 
| 318 | series         = {Frontiers in Applied Mathematics}, | 
| 319 | volume         = {19}, | 
| 320 | publisher      = {SIAM}, | 
| 321 | address        = {Philadelphia}, | 
| 322 | pages          = {369 pp.}, | 
| 323 | } | 
| 324 |  | 
| 325 | @Article{hal-eta:82, | 
| 326 | author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger}, | 
| 327 | year           = 1982, | 
| 328 | title          = {Sensitivity analysis of a radiative-convective | 
| 329 | model by the adjoint method}, | 
| 330 | journal        = jas, | 
| 331 | volume         = {39}, | 
| 332 | pages          = {2038--3050}, | 
| 333 | } | 
| 334 |  | 
| 335 | @Article{Haney, | 
| 336 | author =       {R.L. Haney}, | 
| 337 | title =        {Surface thermal boundary conditions for ocean | 
| 338 | circulation models}, | 
| 339 | journal =      jpo, | 
| 340 | year =         1971, | 
| 341 | volume =       1, | 
| 342 | pages =        {241--248} | 
| 343 | } | 
| 344 |  | 
| 345 | @Article{held-suar:94, | 
| 346 | author         = {I.M. Held and M.J. Suarez}, | 
| 347 | year           = {1994}, | 
| 348 | title          = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models}, | 
| 349 | journal        = {Bulletin of the American Meteorological Society}, | 
| 350 | volume         = {75(10)}, | 
| 351 | pages          = {1825-1830} | 
| 352 | } | 
| 353 |  | 
| 354 | @Article{hil-eta:01, | 
| 355 | author         = {C. Hill and M. Follows and V. Bugnion and | 
| 356 | J. Marshall}, | 
| 357 | year           = {2002}, | 
| 358 | title          = {Spatial and Temporal Impacts of ocean general | 
| 359 | circulation on carbon sequestration}, | 
| 360 | journal        = {Global Biogeochemical Cycles}, | 
| 361 | note           = {submitted}, | 
| 362 | } | 
| 363 |  | 
| 364 | @ARTICLE{hib80, | 
| 365 | AUTHOR      = "W. D. {Hibler, III}", | 
| 366 | TITLE       = "Modeling a Variable Thickness Sea Ice Cover", | 
| 367 | JOURNAL     = mwr, | 
| 368 | YEAR        = 1980, | 
| 369 | VOLUME      = 1, | 
| 370 | PAGES       = "1943-1973" | 
| 371 | } | 
| 372 |  | 
| 373 | @Article{Holland75, | 
| 374 | author         = {W.R. Holland and L. B. Lin}, | 
| 375 | year           = {1975a}, | 
| 376 | title          = {On the origin of mesoscale eddies and their contribution | 
| 377 | to the general circulation of the ocean. I. A preliminary | 
| 378 | numerical experiment}, | 
| 379 | journal        = jpo, | 
| 380 | volume         = {5}, | 
| 381 | pages          = {642-657} | 
| 382 | } | 
| 383 |  | 
| 384 | @Article{hol-lin:75b, | 
| 385 | author         = {W.R. Holland and L. B. Lin}, | 
| 386 | year           = {1975b}, | 
| 387 | title          = {On the origin of mesoscale eddies and their contribution | 
| 388 | to the general circulation of the ocean. II. A parameter | 
| 389 | study}, | 
| 390 | journal        = jpo, | 
| 391 | volume         = {5}, | 
| 392 | pages          = {658-669} | 
| 393 | } | 
| 394 |  | 
| 395 | @Article{jam-oze:86, | 
| 396 | author         = {B.M. Jamart and J. Ozer}, | 
| 397 | year           = {1986}, | 
| 398 | title          = {Numerical boundary layers and spurious residual flows}, | 
| 399 | journal        = jgr, | 
| 400 | volume         = {91}, | 
| 401 | pages          = {10,621-10,631} | 
| 402 | } | 
| 403 |  | 
| 404 | @book{kas-eta:00, | 
| 405 | author         = {P. Kasibhatla and M. Heimann and P. Rayner and | 
| 406 | N. Mahowald and R.G. Prinn and D.E. Hartley}, | 
| 407 | year           = 2000, | 
| 408 | title          = {Inverse methods in global biogeochemical cycles}, | 
| 409 | publisher      = {American Geophysical Union}, | 
| 410 | series         = {Geophysical Monograph}, | 
| 411 | volume         = {114}, | 
| 412 | address        = {Washington, DC}, | 
| 413 | pages          = {324 pp.}, | 
| 414 | } | 
| 415 |  | 
| 416 | @Article{lar-eta:94, | 
| 417 | author         = {W.G. Large and J.C. McWilliams and S.C. Doney}, | 
| 418 | year           = 1994, | 
| 419 | title          = {Oceanic vertical mixing: A review and a model | 
| 420 | with nonlocal boundary layer parameterization}, | 
| 421 | journal        = {Rev.~Geophys.}, | 
| 422 | volume         = {32}, | 
| 423 | pages          = {363--403}, | 
| 424 | } | 
| 425 |  | 
| 426 | @Article{lar-eta:97, | 
| 427 | author         = {W.G. Large and G. Danabasoglu and S.C. Doney | 
| 428 | and J.C. McWilliams}, | 
| 429 | year           = 1997, | 
| 430 | title          = {Sensitivity to surface forcing and boundary layer | 
| 431 | mixing in a global ocean model: annual-mean | 
| 432 | climatology}, | 
| 433 | journal        = jpo, | 
| 434 | volume         = {27}, | 
| 435 | pages          = {2418--2447}, | 
| 436 | } | 
| 437 |  | 
| 438 | @Article{led-tal:86, | 
| 439 | author         = {F.-X. {Le Dimet} and O. Talagrand}, | 
| 440 | year           = 1986, | 
| 441 | title          = {Variational algorithms for analysis and | 
| 442 | assimilation of meteorological observations: | 
| 443 | theoretical aspects}, | 
| 444 | journal        = tel, | 
| 445 | volume         = {38A}, | 
| 446 | pages          = {97--110}, | 
| 447 | } | 
| 448 |  | 
| 449 | @TechReport{lev:94a, | 
| 450 | author =       {S. Levitus and T.P.Boyer}, | 
| 451 | title =        {{World Ocean Atlas 1994 Volume 3: Salinity}}, | 
| 452 | institution =  {NOAA Atlas NESDIS 3}, | 
| 453 | year =         1994, | 
| 454 | OPTkey =       {}, | 
| 455 | OPTtype =      {}, | 
| 456 | OPTnumber =    {}, | 
| 457 | OPTaddress =   {U.S. Department of Commerce, Washington D.C.}, | 
| 458 | OPTmonth =     {}, | 
| 459 | OPTnote =      {}, | 
| 460 | OPTannote =    {} | 
| 461 | } | 
| 462 |  | 
| 463 |  | 
| 464 | @TechReport{Levitus94, | 
| 465 | author =       {S. Levitus and T.P.Boyer}, | 
| 466 | title =        {{World Ocean Atlas 1994 Volume 4: Temperature}}, | 
| 467 | institution =  {NOAA Atlas NESDIS 4}, | 
| 468 | year =         1994, | 
| 469 | OPTkey =       {}, | 
| 470 | OPTtype =      {}, | 
| 471 | OPTnumber =    {}, | 
| 472 | OPTaddress =   {U.S. Department of Commerce, Washington D.C.}, | 
| 473 | OPTmonth =     {}, | 
| 474 | OPTnote =      {}, | 
| 475 | OPTannote =    {} | 
| 476 | } | 
| 477 |  | 
| 478 |  | 
| 479 | @Article{lew-der:85, | 
| 480 | author         = {J. Lewis and J. Derber}, | 
| 481 | year           = {1985}, | 
| 482 | title          = {The use of adjoint equations to solve a variational | 
| 483 | adjustment problem with advective constraints}, | 
| 484 | journal        = {Tellus}, | 
| 485 | volume         = {37A}, | 
| 486 | pages          = {309--322}, | 
| 487 | } | 
| 488 |  | 
| 489 | @techreport{lon:88, | 
| 490 | author         = {R.B. Long}, | 
| 491 | year           = 1988, | 
| 492 | title          = {Notes on assimilating observations into | 
| 493 | numerical models}, | 
| 494 | institution    = {Delft Hydraulics}, | 
| 495 | type           = {Report}, | 
| 496 | number         = {~}, | 
| 497 | pages          = {38 pp.}, | 
| 498 | address        = {Delft (NL)}, | 
| 499 | } | 
| 500 |  | 
| 501 | @ARTICLE{losc-heim:06, | 
| 502 | author = {M. Losch and P. Heimbach}, | 
| 503 | title = {Adjoint sensitivity of an ocean general circulation model | 
| 504 | to bottom topography}, | 
| 505 | journal = jpo, | 
| 506 | year = {2006}, | 
| 507 | volume = {{in press}}, | 
| 508 | url    = {http://mitgcm.org/pdfs/Los2006a.pdf}, | 
| 509 | } | 
| 510 |  | 
| 511 |  | 
| 512 | @Article{maro-wun:93, | 
| 513 | author         = {J. Marotzke and C. Wunsch}, | 
| 514 | year           = 1993, | 
| 515 | title          = {Finding the steady state of a general circulation | 
| 516 | model through data assimilation: | 
| 517 | Application to the North Atlantic Ocean}, | 
| 518 | journal        = jgr, | 
| 519 | volume         = {98, C11}, | 
| 520 | pages          = {20,149--20,167}, | 
| 521 | } | 
| 522 |  | 
| 523 | @Article{maro-eta:99, | 
| 524 | author         = {J. Marotzke and R. Giering and K.Q. Zhang and | 
| 525 | D. Stammer and C. Hill and T. Lee}, | 
| 526 | year           = 1999, | 
| 527 | title          = {Construction of the adjoint MIT ocean general | 
| 528 | circulation model and application to Atlantic heat | 
| 529 | transport variability}, | 
| 530 | journal        = jgr, | 
| 531 | volume         = {104, C12}, | 
| 532 | pages          = {29,529--29,547}, | 
| 533 | } | 
| 534 |  | 
| 535 | @Article{mars-eta:97a, | 
| 536 | author         = {J. Marshall and C. Hill and L. Perelman and | 
| 537 | A. Adcroft}, | 
| 538 | year           = {1997a}, | 
| 539 | title          = {Hydrostatic, quasi-hydrostatic and | 
| 540 | nonhydrostatic ocean modeling}, | 
| 541 | journal        = jgr, | 
| 542 | volume         = {102, C3}, | 
| 543 | pages          = {5,733--5,752}, | 
| 544 | } | 
| 545 |  | 
| 546 | @Article{mars-eta:97b, | 
| 547 | author         = {J. Marshall and A. Adcroft and C. Hill and | 
| 548 | L. Perelman and C. Heisey}, | 
| 549 | year           = {1997b}, | 
| 550 | title          = {Hydrostatic, quasi-hydrostatic and | 
| 551 | nonhydrostatic ocean modeling}, | 
| 552 | journal        = jgr, | 
| 553 | volume         = {102, C3}, | 
| 554 | pages          = {5,753--5,766}, | 
| 555 | } | 
| 556 |  | 
| 557 | @Article{mars-eta:98, | 
| 558 | author         = {J. Marshall and H. Jones and C. Hill}, | 
| 559 | year           = 1998, | 
| 560 | title          = {Efficient ocean modeling using | 
| 561 | non-hydrostatic algorithms}, | 
| 562 | journal        = jms, | 
| 563 | volume         = {18}, | 
| 564 | pages          = {115--134}, | 
| 565 | url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf}, | 
| 566 | doi            = {10.1016/S0924-7963\%2898\%2900008-6}, | 
| 567 | } | 
| 568 |  | 
| 569 | @Article{mcw:96, | 
| 570 | author         = {J. McWilliams}, | 
| 571 | year           = 1996, | 
| 572 | title          = {Modeling the oceanic general circulation}, | 
| 573 | journal        = arfm, | 
| 574 | volume         = {28}, | 
| 575 | pages          = {215--248}, | 
| 576 | } | 
| 577 |  | 
| 578 | %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies | 
| 579 | %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997. | 
| 580 | %% (Available from Unidata or in PostScript form by anonymous FTP from | 
| 581 | %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also | 
| 582 | %%   a hypertext version of the User's Guide available at | 
| 583 | %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's | 
| 584 | %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are | 
| 585 | %%   also available. | 
| 586 |  | 
| 587 | @incollection{naum-etal:06, | 
| 588 | Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout}, | 
| 589 | Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006}, | 
| 590 | Editor = {{P. Wesseling, E. O~nate and J. Periaux}}, | 
| 591 | Pages = {~}, | 
| 592 | Publisher = {TU Delft}, | 
| 593 | Title = {Adjoint code by source transformation with OpenAD/F}, | 
| 594 | Year = {2006}} | 
| 595 |  | 
| 596 | @TechReport{rew:97, | 
| 597 | author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies}, | 
| 598 | title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90}, | 
| 599 | An Interface for Data Access, Version 3}, | 
| 600 | institution =  {Unidata Program Center}, | 
| 601 | type =         {Report}, | 
| 602 | address =      {Boulder, Colorado}, | 
| 603 | year =         1997, | 
| 604 | note =         {http://www.unidata.ucar.edu/packages/netcdf/}, | 
| 605 | } | 
| 606 |  | 
| 607 |  | 
| 608 | @Article{res-eta:98, | 
| 609 | author         = {J.M. Restrepo and G.K. Leaf and A. Griewank}, | 
| 610 | year           = 1998, | 
| 611 | title          = {Circumventing storage limitations in variational | 
| 612 | data assimilation studies}, | 
| 613 | journal        = {SIAM J. Sci. Comput.}, | 
| 614 | volume         = {19}, | 
| 615 | pages          = {1586--1605}, | 
| 616 | } | 
| 617 |  | 
| 618 | @Article{ros-eta:93, | 
| 619 | author         = {N. Rostaing and S. Dalmas and A. Galligo}, | 
| 620 | year           = 1993, | 
| 621 | title          = {Automatic differentiation in Odyss{\'e}e}, | 
| 622 | journal        = {Tellus}, | 
| 623 | volume         = {45A}, | 
| 624 | pages          = {558--568}, | 
| 625 | } | 
| 626 |  | 
| 627 | @incollection{she-and:89, | 
| 628 | author         = {J. Sheinbaum and D.L.T. Anderson}, | 
| 629 | year           = 1989, | 
| 630 | title          = {Assimilation of XBT data using a variational | 
| 631 | technique}, | 
| 632 | booktitle      = {Oceanic circulation models: | 
| 633 | Combining data and dynamics}, | 
| 634 | pages          = {257--285}, | 
| 635 | series         = {NATO ASI Series}, | 
| 636 | volume         = {C 284}, | 
| 637 | editor         = {{D.L.T. Anderson and J. Willebrand}}, | 
| 638 | publisher      = {Springer-Verlag}, | 
| 639 | address        = {Berlin (Germany)}, | 
| 640 | } | 
| 641 |  | 
| 642 | @article{utke-etal:08, | 
| 643 | Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch}, | 
| 644 | Date-Modified = {2007-11-19 10:15:08 -0500}, | 
| 645 | Journal = {{ACM} Transactions on Mathematical Software}, | 
| 646 | Pages = {~}, | 
| 647 | Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes}, | 
| 648 | Volume = {34(4)}, | 
| 649 | Year = {2008}} | 
| 650 |  | 
| 651 | @Article{DaSilva94, | 
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| 653 | year           = 1994, | 
| 654 | title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures}, | 
| 655 | journal        = {NOAA Atlas NESDIS}, | 
| 656 | volume         = {6}, | 
| 657 | publisher      = {U.S. Department of Commerce}, | 
| 658 | address        = {Washington, D.C. (USA)}, | 
| 659 | note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, | 
| 660 | url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/}, | 
| 661 | } | 
| 662 |  | 
| 663 | @techreport{stam-etal:97, | 
| 664 | author         = {D. Stammer and C. Wunsch and R. Giering and | 
| 665 | Q. Zhang and J. Marotzke and J. Marshall and | 
| 666 | C. Hill}, | 
| 667 | year           = 1997, | 
| 668 | title          = {The global ocean circulation estimated from | 
| 669 | TOPEX/POSEIDON altimetry and a general circulation | 
| 670 | model}, | 
| 671 | institution    = {Center for Global Change Science, Massachusetts | 
| 672 | Institute of Technology}, | 
| 673 | type           = {Technical Report}, | 
| 674 | number         = {49}, | 
| 675 | pages          = {40 pp.}, | 
| 676 | address        = {Cambridge (MA), USA}, | 
| 677 | } | 
| 678 |  | 
| 679 | @ARTICLE{stam-etal:02, | 
| 680 | author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall}, | 
| 681 | title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.}, | 
| 682 | journal = jgr, | 
| 683 | year = {2002a}, | 
| 684 | volume = {107(C9)}, | 
| 685 | pages = {3118}, | 
| 686 | doi   = {10.1029/2001JC000888}, | 
| 687 | } | 
| 688 |  | 
| 689 |  | 
| 690 | @Article{Stommel66, | 
| 691 | author         = {H. Stommel}, | 
| 692 | year           = 1948, | 
| 693 | title          = {The western intensification of wind-driven ocean currents}, | 
| 694 | journal        = {Trans. Am. Geophys. Union}, | 
| 695 | volume         = {29}, | 
| 696 | pages          = {206}, | 
| 697 | } | 
| 698 |  | 
| 699 | @Article{tal-cou:87, | 
| 700 | author         = {O. Talagrand and P. Courtier}, | 
| 701 | year           = 1987, | 
| 702 | title          = {Variational assimilation of meteorological | 
| 703 | observations with the adjoint vorticity equation. | 
| 704 | I: Theory}, | 
| 705 | journal        = qjrms, | 
| 706 | volume         = {113}, | 
| 707 | pages          = {1311--1328}, | 
| 708 | } | 
| 709 |  | 
| 710 | @Article{tal:97, | 
| 711 | author         = {O. Talagrand}, | 
| 712 | year           = 1997, | 
| 713 | title          = {Assimilation of observations, an introduction}, | 
| 714 | journal        = {J.~Meteor.~Soc.~Japan}, | 
| 715 | volume         = {75}, | 
| 716 | pages          = {191--209}, | 
| 717 | } | 
| 718 |  | 
| 719 | @book{tar:87, | 
| 720 | author         = {A. Tarantola}, | 
| 721 | title          = {Inverse Problem Theory: Methods for data fitting | 
| 722 | and model parameter estimation}, | 
| 723 | year           = 1987, | 
| 724 | publisher      = {Elsevier}, | 
| 725 | address        = {Amsterdam}, | 
| 726 | pages          = {629 pp.}, | 
| 727 | } | 
| 728 |  | 
| 729 | @techreport{tha:87, | 
| 730 | author         = {W.C. Thacker}, | 
| 731 | year           = 1987, | 
| 732 | title          = {Three lectures on fitting numerical models to | 
| 733 | observations}, | 
| 734 | institution    = {GKSS}, | 
| 735 | type           = {Report}, | 
| 736 | number         = {87/E/65}, | 
| 737 | pages          = {64 pp.}, | 
| 738 | address        = {Geesthacht (D)}, | 
| 739 | } | 
| 740 |  | 
| 741 | @Article{tha-lon:88, | 
| 742 | author         = {W.C. Thacker and R.B. Long}, | 
| 743 | year           = 1988, | 
| 744 | title          = {Fitting dynamics to data}, | 
| 745 | journal        = jgr, | 
| 746 | volume         = {93, C2}, | 
| 747 | pages          = {1,227--1,240}, | 
| 748 | } | 
| 749 |  | 
| 750 | @Article{tha:88, | 
| 751 | author         = {W.C. Thacker}, | 
| 752 | year           = 1988, | 
| 753 | title          = {Fitting models to inadequate data by enforcing | 
| 754 | spatial and temporal smoothness}, | 
| 755 | journal        = jgr, | 
| 756 | volume         = {93}, | 
| 757 | pages          = {10,655--10,665}, | 
| 758 | } | 
| 759 |  | 
| 760 | @Article{tha:89, | 
| 761 | author         = {W.C. Thacker}, | 
| 762 | year           = 1989, | 
| 763 | title          = {The role of the Hessian matrix in fitting models | 
| 764 | to measurements}, | 
| 765 | journal        = jgr, | 
| 766 | volume         = {94, C5}, | 
| 767 | pages          = {6,177--6,196}, | 
| 768 | } | 
| 769 |  | 
| 770 | @Article{tha-rag:94, | 
| 771 | author         = {W.C. Thacker and R. Raghunath}, | 
| 772 | year           = 1994, | 
| 773 | title          = {The rigid lid's contribution to the ill-conditioning | 
| 774 | of oceanic inverse problems}, | 
| 775 | journal        = jgr, | 
| 776 | volume         = {99, C5}, | 
| 777 | pages          = {10,131--10,141}, | 
| 778 | } | 
| 779 |  | 
| 780 | @Article{tzi-tha:89, | 
| 781 | author         = {E. Tziperman and W.C. Thacker}, | 
| 782 | year           = {1989}, | 
| 783 | title          = {An optimal control / adjoint equation approach | 
| 784 | to studying the ocean general circulation}, | 
| 785 | journal        = jpo, | 
| 786 | volume         = {19}, | 
| 787 | pages          = {1471--1485}, | 
| 788 | } | 
| 789 |  | 
| 790 | @Article{tzi-eta:92a, | 
| 791 | author         = {E. Tziperman and W.C. Thacker and R.B. Long and | 
| 792 | S. Hwang}, | 
| 793 | year           = {1992a}, | 
| 794 | title          = {Oceanic data analysis using a general circulation | 
| 795 | model. I: Simulations}, | 
| 796 | journal        = jpo, | 
| 797 | volume         = {22}, | 
| 798 | pages          = {1434--1457}, | 
| 799 | } | 
| 800 |  | 
| 801 | @Article{tzi-eta:92b, | 
| 802 | author         = {E. Tziperman and W.C. Thacker and R.B. Long and | 
| 803 | S. Hwang and S.R. Rintoul}, | 
| 804 | year           = {1992b}, | 
| 805 | title          = {Oceanic data analysis using a general circulation | 
| 806 | model. I: A North Atlantic model}, | 
| 807 | journal        = jpo, | 
| 808 | volume         = {22}, | 
| 809 | pages          = {1458--1485}, | 
| 810 | } | 
| 811 |  | 
| 812 | @book{wun:96, | 
| 813 | author         = {C. Wunsch}, | 
| 814 | title          = {The ocean circulation inverse problem}, | 
| 815 | year           = 1996, | 
| 816 | publisher      = cup, | 
| 817 | address        = {Cambridge (UK)}, | 
| 818 | pages          = {442 pp.}, | 
| 819 | } | 
| 820 |  | 
| 821 | @Article{zha-mar:99, | 
| 822 | author         = {K.Q. Zhang and J. Marotzke}, | 
| 823 | year           = 1999, | 
| 824 | title          = {The importance of open-boundary estimation for an | 
| 825 | Indian Ocean GCM-data synthesis}, | 
| 826 | journal        = {J.~Marine Res.}, | 
| 827 | volume         = {57}, | 
| 828 | pages          = {305--334}, | 
| 829 | } | 
| 830 |  | 
| 831 |  | 
| 832 | @InCollection{hill:95, | 
| 833 | author =       {Hill, C. and J. Marshall}, | 
| 834 | title =        {Application of a Parallel Navier-Stokes Model to | 
| 835 | Ocean Circulation in Parallel Computational Fluid | 
| 836 | Dynamics}, | 
| 837 | booktitle =    {Implementations and Results Using Parallel | 
| 838 | Computers}, | 
| 839 | pages =        {545-552}, | 
| 840 | publisher =    {Elsevier Science B.V.: New York}, | 
| 841 | year =         1995, | 
| 842 | editor =       {A. Ecer, J. Periaux, N. Satofuka and S. Taylor} | 
| 843 | } | 
| 844 |  | 
| 845 |  | 
| 846 | @Article{marshall:97a, | 
| 847 | author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, | 
| 848 | title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean | 
| 849 | modeling}, | 
| 850 | journal =      jgr, | 
| 851 | year =         1997, | 
| 852 | volume =       102, | 
| 853 | number =       {C3}, | 
| 854 | pages =        {5733-5752}, | 
| 855 | url      =     {http://mitgcm.org/pdfs/96JC02775.pdf}, | 
| 856 | } | 
| 857 |  | 
| 858 | @Article{marshall:97b, | 
| 859 | author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, | 
| 860 | title =        {A finite-volume, incompressible Navier Stokes model for | 
| 861 | studies of the ocean on parallel computers}, | 
| 862 | journal =      jgr, | 
| 863 | year =         1997, | 
| 864 | volume =       102, | 
| 865 | number =       {C3}, | 
| 866 | pages =        {5753-5766}, | 
| 867 | url      =     {http://mitgcm.org/pdfs/96JC02776.pdf}, | 
| 868 | } | 
| 869 |  | 
| 870 | @Article{adcroft:97, | 
| 871 | author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall}, | 
| 872 | title =        {Representation of topography by shaved cells in a height | 
| 873 | coordinate ocean model}, | 
| 874 | journal =      mwr, | 
| 875 | year =         1997, | 
| 876 | volume =       125, | 
| 877 | pages =        {2293-2315}, | 
| 878 | url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf}, | 
| 879 | doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2}, | 
| 880 | } | 
| 881 |  | 
| 882 | @Article{adcroft:04a, | 
| 883 | author =       {Adcroft, A. and J.-M. Campin}, | 
| 884 | title =        {Re-scaled height coordinates for accurate representation | 
| 885 | of free-surface flows in ocean circulation models}, | 
| 886 | journal =      om, | 
| 887 | year =         2004, | 
| 888 | volume =       7, | 
| 889 | pages =        {269-284}, | 
| 890 | doi   =        {10.1016/j.ocemod.2003.09.003}, | 
| 891 | } | 
| 892 |  | 
| 893 | @Article{adcroft:04b, | 
| 894 | author =       {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall}, | 
| 895 | title =        {Implementation of an Atmosphere-Ocean General Circulation Model | 
| 896 | on the Expanded Spherical Cube}, | 
| 897 | journal =      mwr, | 
| 898 | year =         2004, | 
| 899 | volume =       132, | 
| 900 | pages =        {2845-2863}, | 
| 901 | url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf}, | 
| 902 | doi     =      {10.1175/MWR2823.1}, | 
| 903 | } | 
| 904 |  | 
| 905 | @inproceedings{adcroft:04c, | 
| 906 | author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall | 
| 907 | and P. Heimbach}, | 
| 908 | title =        {Overview of the Formulation and Numerics of the MIT GCM}, | 
| 909 | booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods, | 
| 910 | Recent developments in numerical methods for atmosphere and | 
| 911 | ocean modelling}, | 
| 912 | year =         2004, | 
| 913 | pages =        {139-149}, | 
| 914 | url   =        {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf}, | 
| 915 | publisher =     ecmwf | 
| 916 | } | 
| 917 |  | 
| 918 | @Article{marshall:04, | 
| 919 | author =       {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White}, | 
| 920 | title =        {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms}, | 
| 921 | journal =      mwr, | 
| 922 | year =         2004, | 
| 923 | volume =       132, | 
| 924 | pages =        {2882-2894}, | 
| 925 | url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf}, | 
| 926 | doi    =       {10.1175/MWR2835.1}, | 
| 927 | } | 
| 928 |  | 
| 929 | @Article{visbeck:97, | 
| 930 | author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall}, | 
| 931 | title =        {Specification of eddy transfer coefficients in | 
| 932 | coarse-resolution ocean circulation models}, | 
| 933 | journal =      jpo, | 
| 934 | year =         1997, | 
| 935 | volume =       27, | 
| 936 | number =       3, | 
| 937 | pages =        {381-402} | 
| 938 | } | 
| 939 |  | 
| 940 | @Article{shaw:98, | 
| 941 | author =       {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P. | 
| 942 | and Marshall, J.}, | 
| 943 | title =        {A comparison of implicitly parallel multi-threaded and | 
| 944 | data-parallel implementations of an ocean model based | 
| 945 | on the Navier-Stokes equations}, | 
| 946 | journal =      {J. of Parallel and Distributed Computing}, | 
| 947 | year =         1998, | 
| 948 | volume =       48, | 
| 949 | number =       1, | 
| 950 | pages =        {1-51} | 
| 951 | } | 
| 952 |  | 
| 953 | @Article{mjn:99, | 
| 954 | author =       {Marshall, J., Jamous, D and J. Nilsson}, | 
| 955 | title =        {Reconciling `thermodynamic' and `dynamic' methods of | 
| 956 | computation of water-mass transformation rates}, | 
| 957 | journal =      {DSR}, | 
| 958 | year =         1999, | 
| 959 | volume =       46, | 
| 960 | pages =        {545-572} | 
| 961 | } | 
| 962 |  | 
| 963 | @Article{ms:99, | 
| 964 | author =       {Marshall, J and F. Schott}, | 
| 965 | title =        {Open ocean deep convection: observations, models and theory}, | 
| 966 | journal =      {Rev. Geophys.}, | 
| 967 | year =         1999, | 
| 968 | volume =       37, | 
| 969 | number =       1, | 
| 970 | pages =        {1-64} | 
| 971 | } | 
| 972 |  | 
| 973 | @Article{adcroft:99, | 
| 974 | author =       {Adcroft, A., Hill C. and J. Marshall}, | 
| 975 | title =        {A new treatment of the Coriolis terms in C-grid models | 
| 976 | at both high and low resolutions}, | 
| 977 | journal =      mwr, | 
| 978 | year =         1999, | 
| 979 | volume =       127, | 
| 980 | pages =        {1928-1936}, | 
| 981 | url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf}, | 
| 982 | doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2}, | 
| 983 | } | 
| 984 |  | 
| 985 | @InProceedings{hill:99, | 
| 986 | author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall}, | 
| 987 | title =        {A Strategy for Terascale Climate Modeling}, | 
| 988 | booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology}, | 
| 989 | year =         1999, | 
| 990 | pages = {406-425}, | 
| 991 | publisher =    {World Scientific}, | 
| 992 | } | 
| 993 |  | 
| 994 | @Article{wardle:00, | 
| 995 | author =       {Wardle R. and Marshall J.}, | 
| 996 | title =        {Representation of eddies in primitive equation models by a PV flux}, | 
| 997 | journal =      jpo, | 
| 998 | year =         2000, | 
| 999 | volume =       30, | 
| 1000 | number =       10, | 
| 1001 | pages =        {2481-2503} | 
| 1002 | } | 
| 1003 |  | 
| 1004 | @Article{ac:02, | 
| 1005 | author =       {Adcroft, A. and J.-M. Campin}, | 
| 1006 | title =        {Comparison of finite volume schemes and direct-space-time | 
| 1007 | methods for ocean circulation models}, | 
| 1008 | journal =      om, | 
| 1009 | year =         2002, | 
| 1010 | note =         {in preparation} | 
| 1011 | } | 
| 1012 |  | 
| 1013 | @Article{adcroft:02, | 
| 1014 | author =       {Adcroft, A., et~al.}, | 
| 1015 | title =        {Energy conversion in discrete numerical models}, | 
| 1016 | journal =      om, | 
| 1017 | year =         2002, | 
| 1018 | note =         {in preparation} | 
| 1019 | } | 
| 1020 |  | 
| 1021 | @InCollection{arakawa:77, | 
| 1022 | author =       {Arakawa, A. and Lamb, V.}, | 
| 1023 | title =        {Computational Design of the Basic Dynamical Processes of | 
| 1024 | the UCLA General Circulation Model}, | 
| 1025 | booktitle =    {Methods in Computational Physics}, | 
| 1026 | pages =        {174-267}, | 
| 1027 | publisher =    {Academic Press}, | 
| 1028 | year =         1977, | 
| 1029 | volume =       17 | 
| 1030 | } | 
| 1031 |  | 
| 1032 | @Article{miller_white:84, | 
| 1033 | author =       {Miller, M. J. and White, A. A.}, | 
| 1034 | title =        {On the non-hydrostatic equations in pressure | 
| 1035 | and sigma coordiantes}, | 
| 1036 | journal =      qjrms, | 
| 1037 | year =         1984, | 
| 1038 | volume =       110, | 
| 1039 | pages =        {515-533} | 
| 1040 | } | 
| 1041 |  | 
| 1042 | @Article{white:89, | 
| 1043 | author =       {White, A. A.}, | 
| 1044 | title =        {An extended version of a nonhydrostatic, pressure coordiante model}, | 
| 1045 | journal =      qjrms, | 
| 1046 | year =         1989, | 
| 1047 | volume =       115, | 
| 1048 | pages =        {1243-1251} | 
| 1049 | } | 
| 1050 |  | 
| 1051 | @Article{adcroft:98, | 
| 1052 | author =       {Adcroft, A. and Marshall, D.}, | 
| 1053 | title =        {How slippery are piecewise-constant coastlines in numerical | 
| 1054 | ocean models?}, | 
| 1055 | journal =      {Tellus}, | 
| 1056 | year =         1998, | 
| 1057 | volume =       50, | 
| 1058 | number =       1, | 
| 1059 | pages =        {95-108} | 
| 1060 | } | 
| 1061 |  | 
| 1062 | @PhdThesis{adcroft:95, | 
| 1063 | author =       {Adcroft, A.}, | 
| 1064 | title =        {Numerical Algorithms for use in a Dynamical Model of the | 
| 1065 | Ocean}, | 
| 1066 | school =       {Imperial College, London}, | 
| 1067 | year =         1995 | 
| 1068 | } | 
| 1069 |  | 
| 1070 | @Article{griffies:00, | 
| 1071 | author =       {Griffies, S.,M. and Hallberg, R.,W.}, | 
| 1072 | title =        {Biharmonic friction with a Smagorinsky-like viscosity for | 
| 1073 | use in large-scale eddy-permitting ocean models}, | 
| 1074 | journal =      mwr, | 
| 1075 | year =         2000, | 
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| 1649 | @TechReport{MPI-std-20, | 
| 1650 | author =       {{Message Passing Interface Forum}}}, | 
| 1651 | title =        {{MPI}: A Message-Passing Interface standard (version 2.0)}, | 
| 1652 | institution =  {mpi-forum.org}, | 
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