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revision 1.40 by jmc, Mon Aug 30 23:01:09 2010 UTC revision 1.49 by jmc, Fri Aug 29 17:05:57 2014 UTC
# Line 4  Line 4 
4  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
5  @string{climd   = {Clim.~Dynamics}}  @string{climd   = {Clim.~Dynamics}}
6  @string{cch     = {Clim.\ Change}}  @string{cch     = {Clim.\ Change}}
7  @string{jgr     = {J.~Geophys.~Res.}}  @string{cup     = {Cambridge University Press}}
8  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{dao     = {Dyn.~Atmos.~Oceans}}
9  @string{jas     = {J.~Atmos.~Sci.}}  @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}
10    @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}
11    @string{dsr     = {Deep Sea Res.}}
12    @string{ecmwf   = {ECMWF}}
13    @string{eos     = {Eos~Trans.\ AGU}}
14    @string{esa     = {European Space Agency (ESA)}}
15    @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16    @string{estec   = {European Space Research and Technology Centre (ESTEC)}}
17    @string{gaos    = {Global Atmos.~Ocean System}}
18    @string{grl     = {Geophys.~Res.~Lett.}}
19    @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}
20    @string{ifremer = {IFREMER/CERSAT}}
21    @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}
22  @string{jam     = {J.~Appl.~Meteor.}}  @string{jam     = {J.~Appl.~Meteor.}}
23  @string{jpo     = {J.~Phys.~Oceanogr.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
24    @string{jas     = {J.~Atmos.~Sci.}}
25  @string{jclim   = {J.~Clim.}}  @string{jclim   = {J.~Clim.}}
26  @string{jcp     = {J.~Comput.~Phys.}}  @string{jcp     = {J.~Comput.~Phys.}}
 @string{ieee    = {IEEE Trans.~Geosci. Remote Sensing}}  
27  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
28  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jgr     = {J.~Geophys.~Res.}}
29    @string{ijrs    = {Int.~J.~Remote Sensing}}
30  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
31  @string{om      = {Ocean Modelling}}  @string{jpo     = {J.~Phys.~Oceanogr.}}
32  @string{gaos    = {Global Atmos.~Ocean System}}  @string{mpi     = {MPI f\"ur Meteorologie}}
 @string{grl     = {Geophys.~Res.~Lett.}}  
 @string{dsr     = {Deep Sea Res.}}  
 @string{dao     = {Dyn.~Atmos.~Oceans}}  
33  @string{mwr     = {Mon.~Wea.~Rev.}}  @string{mwr     = {Mon.~Wea.~Rev.}}
34    @string{om      = {Ocean Modelling}}
35    @string{ptrsl   = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}  @string{qjrms   = {{Q.~J.~R.~Meteorol.~Soc.}}}
37    @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38  @string{tel     = {Tellus}}  @string{tel     = {Tellus}}
 @string{cup     = {Cambridge University Press}}  
 @string{esapub  = {ESA Publications Division, ESTEC, Noordwijk (NL)}}  
 @string{ifremer = {IFREMER/CERSAT}}  
 @string{igarss  = {IEEE Press, Piscataway, N.J., USA}}  
 @string{dnmi    = {The Norwegian Meteorological Institute (DNMI)}}  
 @string{dkrz    = {Deutsches Klimarechenzentrum (DKRZ)}}  
 @string{mpi     = {MPI f\"ur Meteorologie}}  
 @string{ecmwf   = {ECMWF}}  
 @string{estec   = {European Space Research and Technology Centre  
                         (ESTEC)}}  
 @string{esa     = {European Space Agency (ESA)}}  
 @string{eos     = {Eos~Trans.\ AGU}}  
39    
40  @Article{bis-eta:92,  @Article{bis-eta:92,
41   author         = {C.H. Bishof and G.F. Corliss and L. Green and   author         = {C.H. Bishof and G.F. Corliss and L. Green and
# Line 46  Line 47 
47   volume         = {3},   volume         = {3},
48   pages          = {625--638},   pages          = {625--638},
49                    }                    }
50    
51  @incollection{bis:94,  @incollection{bis:94,
52   author         = {C.H. Bishof},   author         = {C.H. Bishof},
53   year           = 1994,   year           = 1994,
# Line 59  Line 60 
60   publisher      = {Kluwer},   publisher      = {Kluwer},
61   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
62                    }                    }
63    
64  @techreport{bis-eta:94,  @techreport{bis-eta:94,
65   author         = {C. Bishof and A. Carle and P. Khademi and   author         = {C. Bishof and A. Carle and P. Khademi and
66                    A. Maurer},                    A. Maurer},
# Line 70  Line 71 
71                    Computer Science Division},                    Computer Science Division},
72   type           = {Argonne Preprint},   type           = {Argonne Preprint},
73   number         = {ANL-MCS-P981-1194},   number         = {ANL-MCS-P981-1194},
74   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
75                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
76   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
77                    }                    }
78    
79    @ARTICLE{bryan:84,
80      author = {Kirk Bryan},
81      title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
82      journal = jpo,
83      year = {1984},
84      volume = {14},
85      number = {4},
86      pages = {666-673},
87    }
88    
89  @ARTICLE{bugi-hill:06,  @ARTICLE{bugi-hill:06,
90    author = {V. Bugnion and C. Hill},    author = {V. Bugnion and C. Hill},
91    title = {Equilibration mechanisms in an adjoint ocean general    title = {Equilibration mechanisms in an adjoint ocean general
# Line 86  Line 97 
97    pages = {51-61},    pages = {51-61},
98    doi   = {10.1007/s10236-005-0052-z},    doi   = {10.1007/s10236-005-0052-z},
99  }  }
100    
101  @techreport{bis-roh:97,  @techreport{bis-roh:97,
102   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
103   year           = 1997,   year           = 1997,
# Line 96  Line 107 
107                    Computer Science Division},                    Computer Science Division},
108   type           = {Argonne Preprint},   type           = {Argonne Preprint},
109   number         = {ANL-MCS-P626-1196},   number         = {ANL-MCS-P626-1196},
110   address        = {ANL; 9700 South Cass Ave.;   address        = {ANL; 9700 South Cass Ave.;
111                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
112   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
113                    }                    }
114    
115  @Article{cou-tal:87,  @Article{cou-tal:87,
116   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
117   year           = 1987,   year           = 1987,
118   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
119                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
120                    II: Numerical results},                    II: Numerical results},
121   journal        = qjrms,   journal        = qjrms,
122   volume         = {113},   volume         = {113},
123   pages          = {1329--1347},   pages          = {1329--1347},
124                    }                    }
125    
126  @Article{cou-tal:90,  @Article{cou-tal:90,
127   author         = {P. Courtier and O. Talagrand},   author         = {P. Courtier and O. Talagrand},
128   year           = 1990,   year           = 1990,
# Line 122  Line 133 
133   volume         = {42A},   volume         = {42A},
134   pages          = {531--549},   pages          = {531--549},
135                    }                    }
136    
137  @Article{cou-eta:94,  @Article{cou-eta:94,
138   author         = {P. Courtier and J.-N. Th{\'e}paut and   author         = {P. Courtier and J.-N. Th{\'e}paut and
139                    A. Hollingsworth},                    A. Hollingsworth},
# Line 143  Line 154 
154    volume = {119},    volume = {119},
155    pages  = {702-720},    pages  = {702-720},
156  }  }
157    
158    
159  @ARTICLE{dutk-etal:06,  @ARTICLE{dutk-etal:06,
160    author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},    author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
# Line 155  Line 166 
166    pages  = {L02603},    pages  = {L02603},
167    doi    = {10.1029/2005GL024987},    doi    = {10.1029/2005GL024987},
168  }  }
169    
170  @Article{err:97,  @Article{err:97,
171   author         = {R.M. Errico},   author         = {R.M. Errico},
172   year           = 1997,   year           = 1997,
# Line 164  Line 175 
175   volume         = {78},   volume         = {78},
176   pages          = {2577--2591},   pages          = {2577--2591},
177                    }                    }
178    
179  @Article{far-moo:92,  @Article{far-moo:92,
180   author         = {B.F. Farrell and A.M. Moore},   author         = {B.F. Farrell and A.M. Moore},
181   year           = {1992},   year           = {1992},
# Line 174  Line 185 
185   volume         = {22},   volume         = {22},
186   pages          = {338--349},   pages          = {338--349},
187                    }                    }
188    
189  @Article{far-ioa:96a,  @Article{far-ioa:96a,
190   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
191   year           = {1996a},   year           = {1996a},
# Line 184  Line 195 
195   volume         = {53},   volume         = {53},
196   pages          = {2025--2040},   pages          = {2025--2040},
197                    }                    }
198    
199  @Article{far-ioa:96b,  @Article{far-ioa:96b,
200   author         = {B.F. Farrell and P. Ioannou},   author         = {B.F. Farrell and P. Ioannou},
201   year           = {1996b},   year           = {1996b},
# Line 194  Line 205 
205   volume         = {53},   volume         = {53},
206   pages          = {2041--2053},   pages          = {2041--2053},
207                    }                    }
208    
209  @techreport{fau-pap:98,  @techreport{fau-pap:98,
210   author         = {C. Faure and Y. Papegay},   author         = {C. Faure and Y. Papegay},
211   year           = 1998,   year           = 1998,
# Line 207  Line 218 
218                    06902 Sophia Antipolis Cedex; France},                    06902 Sophia Antipolis Cedex; France},
219   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},   note           = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
220                    }                    }
221    
222  @Article{fau:00,  @Article{fau:00,
223   author         = {C. Faure},   author         = {C. Faure},
224   year           = {2000},   year           = {2000},
# Line 215  Line 226 
226   journal        = {Optimisation Methods and Software},   journal        = {Optimisation Methods and Software},
227   note           = {in press},   note           = {in press},
228                    }                    }
229    
230  @Article{fer-eta:05,  @Article{fer-eta:05,
231   author         = {D. Ferreira and J. Marshall and P. Heimbach},   author         = {D. Ferreira and J. Marshall and P. Heimbach},
232   year           = 2005,   year           = 2005,
# Line 227  Line 238 
238                    }                    }
239    
240  @Article{gas-eta:90,  @Article{gas-eta:90,
241   author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},   author         = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
242   year           = 1990,   year           = 1990,
243   title          = {A Simple Eddy Kinetic Energy Model for Simulations of the   title          = {A Simple Eddy Kinetic Energy Model for Simulations of the
244                     Oceanic Vertical Mixing: Tests at Station Papa and Long-Term                     Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
245                     Upper Ocean Study Site},                     Upper Ocean Study Site},
246   journal        = jgr,   journal        = jgr,
247   volume         = {95 (C9)},   volume         = {95 (C9)},
# Line 238  Line 249 
249                    }                    }
250    
251  @Article{gen-mcw:90,  @Article{gen-mcw:90,
252   author         = {P.R. Gent and J.C. McWilliams},   author         = {P. R. Gent and J. C. McWilliams},
253   year           = 1990,   year           = 1990,
254   title          = {Isopycnal mixing in ocean circulation models},   title          = {Isopycnal mixing in ocean circulation models},
255   journal        = jpo,   journal        = jpo,
256   volume         = {20},   volume         = {20},
257   pages          = {150--155},   pages          = {150--155},
258                    }                    }
259    
260  @Article{gen-eta:95,  @Article{gen-eta:95,
261   author         = {P.R. Gent and J. Willebrand and T.J. McDougall   author         = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
                   and J.C. McWilliams},  
262   year           = 1995,   year           = 1995,
263   title          = {Parameterizing eddy-induced tracer transports in   title          = {Parameterizing eddy-induced tracer transports in ocean circulation models},
                   ocean circulation models},  
264   journal        = jpo,   journal        = jpo,
265   volume         = {25},   volume         = {25},
266   pages          = {463--474},   pages          = {463--474},
267                    }                    }
268    
269  @Article{gie-kam:98,  @Article{gie-kam:98,
270   author         = {R. Giering and T. Kaminski},   author         = {R. Giering and T. Kaminski},
271   year           = 1998,   year           = 1998,
# Line 269  Line 278 
278  @techreport{gie:99,  @techreport{gie:99,
279   author         = {R. Giering},   author         = {R. Giering},
280   year           = 1999,   year           = 1999,
281   title          = {Tangent linear and Adjoint Model Compiler.   title          = {Tangent linear and Adjoint Model Compiler.
282                    Users manual 1.4 (TAMC Version 5.2)},                    Users manual 1.4 (TAMC Version 5.2)},
283   institution    = {Massachusetts Institute of Technology},   institution    = {Massachusetts Institute of Technology},
284   type           = {Report},   type           = {Report},
# Line 278  Line 287 
287                    02139; USA},                    02139; USA},
288   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},   note           = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
289                    }                    }
290    
291  @incollection{gie:00,  @incollection{gie:00,
292   author         = {R. Giering},   author         = {R. Giering},
293   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and   editor         = {P. Kasibhatla and M. Heimann and P. Rayner and
# Line 302  Line 311 
311   volume         = {45},   volume         = {45},
312   pages          = {407--435},   pages          = {407--435},
313                    }                    }
314    
315  @book{gil-eta:81,  @book{gil-eta:81,
316   author         = {P.E. Gill and W. Murray and M.H. Wright},   author         = {P.E. Gill and W. Murray and M.H. Wright},
317   title          = {Practical optimization},   title          = {Practical optimization},
318   year           = 1981,   year           = 1981,
319   publisher      = {Academic Press},   publisher      = {Academic Press},
320   address        = {London},   address        = {London},
321   pages          = {401 pp.},   pages          = {401 pp.},
322                    }                    }
323                                                                      
324  @incollection{gri:89,  @incollection{gri:89,
325   author         = {A. Griewank},   author         = {A. Griewank},
326   year           = 1989,   year           = 1989,
# Line 323  Line 332 
332   publisher      = {Kluwer},   publisher      = {Kluwer},
333   address        = {Dordrecht, NL},   address        = {Dordrecht, NL},
334                    }                    }
335    
336  @Article{gri:92,  @Article{gri:92,
337    author =       {A.~Griewank},    author =       {A.~Griewank},
338    title =        {Achieving logarithmic growth of temporal and spatial    title =        {Achieving logarithmic growth of temporal and spatial
# Line 342  Line 351 
351   series         = {Frontiers in Applied Mathematics},   series         = {Frontiers in Applied Mathematics},
352   volume         = {19},   volume         = {19},
353   publisher      = {SIAM},   publisher      = {SIAM},
354   address        = {Philadelphia},   address        = {Philadelphia},
355   pages          = {369 pp.},   pages          = {369 pp.},
356                    }                    }
357                                                                      
358  @Article{hal-eta:82,  @Article{hal-eta:82,
359   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},   author         = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
360   year           = 1982,   year           = 1982,
# Line 365  Line 374 
374    volume =       1,    volume =       1,
375    pages =        {241--248}    pages =        {241--248}
376  }  }
377    
378  @Article{held-suar:94,  @Article{held-suar:94,
379   author         = {I.M. Held and M.J. Suarez},   author         = {I.M. Held and M.J. Suarez},
380   year           = {1994},   year           = {1994},
# Line 374  Line 383 
383   volume         = {75(10)},   volume         = {75(10)},
384   pages          = {1825-1830}   pages          = {1825-1830}
385  }  }
386    
387  @Article{hil-eta:01,  @Article{hil-eta:01,
388   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
389                    J. Marshall},                    J. Marshall},
390   year           = {2002},   year           = {2002},
391   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
392                    circulation on carbon sequestration},                    circulation on carbon sequestration},
393   journal        = {Global Biogeochemical Cycles},   journal        = {Global Biogeochemical Cycles},
394   note           = {submitted},   note           = {submitted},
# Line 397  Line 406 
406  @Article{Holland75,  @Article{Holland75,
407   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
408   year           = {1975a},   year           = {1975a},
409   title          = {On the origin of mesoscale eddies and their contribution   title          = {On the origin of mesoscale eddies and their contribution
410                     to the general circulation of the ocean. I. A preliminary                     to the general circulation of the ocean. I. A preliminary
411                     numerical experiment},                     numerical experiment},
412   journal        = jpo,   journal        = jpo,
413   volume         = {5},   volume         = {5},
# Line 408  Line 417 
417  @Article{hol-lin:75b,  @Article{hol-lin:75b,
418   author         = {W.R. Holland and L. B. Lin},   author         = {W.R. Holland and L. B. Lin},
419   year           = {1975b},   year           = {1975b},
420   title          = {On the origin of mesoscale eddies and their contribution   title          = {On the origin of mesoscale eddies and their contribution
421                     to the general circulation of the ocean. II. A parameter                     to the general circulation of the ocean. II. A parameter
422                     study},                     study},
423   journal        = jpo,   journal        = jpo,
# Line 417  Line 426 
426                    }                    }
427    
428  @Article{jam-oze:86,  @Article{jam-oze:86,
429   author         = {B.M. Jamart and J. Ozer},   author         = {B.M. Jamart and J. Ozer},
430   year           = {1986},   year           = {1986},
431   title          = {Numerical boundary layers and spurious residual flows},   title          = {Numerical boundary layers and spurious residual flows},
432   journal        = jgr,   journal        = jgr,
433   volume         = {91},   volume         = {91},
434   pages          = {10,621-10,631}   pages          = {10,621-10,631}
# Line 440  Line 449 
449  @Article{lar-eta:94,  @Article{lar-eta:94,
450   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},   author         = {W.G. Large and J.C. McWilliams and S.C. Doney},
451   year           = 1994,   year           = 1994,
452   title          = {Oceanic vertical mixing: A review and a model   title          = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
                   with nonlocal boundary layer parameterization},  
453   journal        = {Rev.~Geophys.},   journal        = {Rev.~Geophys.},
454   volume         = {32},   volume         = {32},
455   pages          = {363--403},   pages          = {363--403},
456                    }                    }
457    
458  @Article{lar-eta:97,  @Article{lar-eta:97,
459   author         = {W.G. Large and G. Danabasoglu and S.C. Doney   author         = {W. G. Large and G. Danabasoglu and S. C. Doney
460                    and J.C. McWilliams},                    and J. C. McWilliams},
461   year           = 1997,   year           = 1997,
462   title          = {Sensitivity to surface forcing and boundary layer   title          = {Sensitivity to surface forcing and boundary layer
463                    mixing in a global ocean model: annual-mean                    mixing in a global ocean model: Annual-mean climatology},
                   climatology},  
464   journal        = jpo,   journal        = jpo,
465   volume         = {27},   volume         = {27},
466     number         = 11,
467   pages          = {2418--2447},   pages          = {2418--2447},
468                    }                    }
469    
470  @Article{led-tal:86,  @Article{led-tal:86,
471   author         = {F.-X. {Le Dimet} and O. Talagrand},   author         = {F.-X. {Le Dimet} and O. Talagrand},
472   year           = 1986,   year           = 1986,
# Line 499  Line 507 
507    OPTannote =    {}    OPTannote =    {}
508  }  }
509    
510    
511  @Article{lew-der:85,  @Article{lew-der:85,
512   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
513   year           = {1985},   year           = {1985},
# Line 509  Line 517 
517   volume         = {37A},   volume         = {37A},
518   pages          = {309--322},   pages          = {309--322},
519                    }                    }
520    
521  @techreport{lon:88,  @techreport{lon:88,
522   author         = {R.B. Long},   author         = {R.B. Long},
523   year           = 1988,   year           = 1988,
# Line 523  Line 531 
531                    }                    }
532    
533  @ARTICLE{losc-heim:06,  @ARTICLE{losc-heim:06,
534    author = {M. Losch and P. Heimbach},    author =       {Martin Losch and Patrick Heimbach},
535    title = {Adjoint sensitivity of an ocean general circulation model    title =        {Adjoint Sensitivity of an Ocean General Circulation
536             to bottom topography},                    Model to Bottom Topography},
537    journal = jpo,    journal =      jpo,
538    year = {2006},    year =         2007,
539    volume = {{in press}},    volume =       37,
540      doi =          {10.1175/JPO3017.1},
541      number =       2,
542      pages =        {377--393},
543    url    = {http://mitgcm.org/pdfs/Los2006a.pdf},    url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
544  }  }
545    
546    
547  @Article{maro-wun:93,  @Article{maro-wun:93,
548   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
549   year           = 1993,   year           = 1993,
# Line 543  Line 554 
554   volume         = {98, C11},   volume         = {98, C11},
555   pages          = {20,149--20,167},   pages          = {20,149--20,167},
556                    }                    }
557    
558  @Article{maro-eta:99,  @Article{maro-eta:99,
559   author         = {J. Marotzke and R. Giering and K.Q. Zhang and   author         = {J. Marotzke and R. Giering and K.Q. Zhang and
560                    D. Stammer and C. Hill and T. Lee},                    D. Stammer and C. Hill and T. Lee},
561   year           = 1999,   year           = 1999,
562   title          = {Construction of the adjoint MIT ocean general   title          = {Construction of the adjoint MIT ocean general
# Line 555  Line 566 
566   volume         = {104, C12},   volume         = {104, C12},
567   pages          = {29,529--29,547},   pages          = {29,529--29,547},
568                    }                    }
569    
570  @Article{mars-eta:97a,  @Article{mars-eta:97a,
571   author         = {J. Marshall and C. Hill and L. Perelman and   author         = {J. Marshall and C. Hill and L. Perelman and
572                    A. Adcroft},                    A. Adcroft},
# Line 566  Line 577 
577   volume         = {102, C3},   volume         = {102, C3},
578   pages          = {5,733--5,752},   pages          = {5,733--5,752},
579                    }                    }
580    
581  @Article{mars-eta:97b,  @Article{mars-eta:97b,
582   author         = {J. Marshall and A. Adcroft and C. Hill and   author         = {J. Marshall and A. Adcroft and C. Hill and
583                    L. Perelman and C. Heisey},                    L. Perelman and C. Heisey},
584   year           = {1997b},   year           = {1997b},
585   title          = {Hydrostatic, quasi-hydrostatic and   title          = {Hydrostatic, quasi-hydrostatic and
# Line 577  Line 588 
588   volume         = {102, C3},   volume         = {102, C3},
589   pages          = {5,753--5,766},   pages          = {5,753--5,766},
590                    }                    }
591    
592  @Article{mars-eta:98,  @Article{mars-eta:98,
593   author         = {J. Marshall and H. Jones and C. Hill},   author         = {J. Marshall and H. Jones and C. Hill},
594   year           = 1998,   year           = 1998,
# Line 589  Line 600 
600   url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},   url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
601   doi            = {10.1016/S0924-7963\%2898\%2900008-6},   doi            = {10.1016/S0924-7963\%2898\%2900008-6},
602                    }                    }
603    
604  @Article{mol:09,  @Article{mol:09,
605   author         = {Andrea Molod},   author         = {Andrea Molod},
606   year           = 2009,   year           = 2009,
# Line 602  Line 613 
613    
614  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies  %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
615  %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.  %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
616  %% (Available from Unidata or in PostScript form by anonymous FTP from  %% (Available from Unidata or in PostScript form by anonymous FTP from
617  %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also  %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
618  %%   a hypertext version of the User's Guide available at  %%   a hypertext version of the User's Guide available at
619  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's  %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
620  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
621  %%   also available.  %%   also available.
622      
623  @incollection{naum-etal:06,  @incollection{naum-etal:06,
624          Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},          Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
625          Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},          Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
# Line 639  Line 650 
650    
651  @TechReport{rew:97,  @TechReport{rew:97,
652    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
653    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
654                    An Interface for Data Access, Version 3},                    An Interface for Data Access, Version 3},
655    institution =  {Unidata Program Center},    institution =  {Unidata Program Center},
656    type =         {Report},    type =         {Report},
# Line 658  Line 669 
669   volume         = {19},   volume         = {19},
670   pages          = {1586--1605},   pages          = {1586--1605},
671                    }                    }
672    
673  @Article{ros-eta:93,  @Article{ros-eta:93,
674   author         = {N. Rostaing and S. Dalmas and A. Galligo},   author         = {N. Rostaing and S. Dalmas and A. Galligo},
675   year           = 1993,   year           = 1993,
# Line 667  Line 678 
678   volume         = {45A},   volume         = {45A},
679   pages          = {558--568},   pages          = {558--568},
680                    }                    }
681    
682  @incollection{she-and:89,  @incollection{she-and:89,
683   author         = {J. Sheinbaum and D.L.T. Anderson},   author         = {J. Sheinbaum and D.L.T. Anderson},
684   year           = 1989,   year           = 1989,
685   title          = {Assimilation of XBT data using a variational   title          = {Assimilation of XBT data using a variational
686                    technique},                    technique},
687   booktitle      = {Oceanic circulation models:   booktitle      = {Oceanic circulation models:
688                    Combining data and dynamics},                    Combining data and dynamics},
# Line 684  Line 695 
695                    }                    }
696    
697  @article{utke-etal:08,  @article{utke-etal:08,
698          Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},    Author =       {J. Utke and U. Naumann and M. Fagan and N. Tallent
699          Date-Modified = {2007-11-19 10:15:08 -0500},                    and M. Strout and P. Heimbach and C. Hill and
700          Journal = {{ACM} Transactions on Mathematical Software},                    D. Ozyurt and C. Wunsch},
701          Pages = {~},    Date-Modified ={2007-11-19 10:15:08 -0500},
702          Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},    Journal =      {{ACM} Transactions on Mathematical Software},
703          Volume = {34(4)},    Pages =        {~},
704          Year = {2008}}    Title =        {OpenAD/F: A modular open source tool for automatic
705                      differentiation of Fortran codes},
706      Volume =       {34(4)},
707      Year =         2008
708    }
709    
710  @Article{DaSilva94,  @Article{DaSilva94,
711   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
# Line 703  Line 718 
718   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
719   url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
720                    }                    }
721    
722  @techreport{stam-etal:97,  @techreport{stam-etal:97,
723   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
724                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
725                    C. Hill},                    C. Hill},
726   year           = 1997,   year           = 1997,
727   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
728                    TOPEX/POSEIDON altimetry and a general circulation                    TOPEX/POSEIDON altimetry and a general circulation
729                    model},                    model},
730   institution    = {Center for Global Change Science, Massachusetts   institution    = {Center for Global Change Science, Massachusetts
# Line 719  Line 734 
734   pages          = {40 pp.},   pages          = {40 pp.},
735   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
736                    }                    }
737    
738  @ARTICLE{stam-etal:02,  @article{stam-etal:02,
739    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},    author =       {D. Stammer and C. Wunsch and R. Giering and
740    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},                    C. Eckert and P. Heimbach and J. Marotzke and
741    journal = jgr,                    A. Adcroft and C.N. Hill and J. Marshall},
742    year = {2002a},    title =        {The global ocean circulation and transports during
743    volume = {107(C9)},                    1992 -- 1997, estimated from ocean observations and
744    pages = {3118},                    a general circulation model.},
745    doi   = {10.1029/2001JC000888},    journal =      jgr,
746      year =         {2002a},
747      volume =       {107(C9)},
748      pages =        {3118},
749      doi =          {10.1029/2001JC000888},
750  }  }
751    
752    
# Line 743  Line 762 
762  @Article{tal-cou:87,  @Article{tal-cou:87,
763   author         = {O. Talagrand and P. Courtier},   author         = {O. Talagrand and P. Courtier},
764   year           = 1987,   year           = 1987,
765   title          = {Variational assimilation of meteorological   title          = {Variational assimilation of meteorological
766                    observations with the adjoint vorticity equation.                    observations with the adjoint vorticity equation.
767                    I: Theory},                    I: Theory},
768   journal        = qjrms,   journal        = qjrms,
769   volume         = {113},   volume         = {113},
770   pages          = {1311--1328},   pages          = {1311--1328},
771                    }                    }
772    
773  @Article{tal:97,  @Article{tal:97,
774   author         = {O. Talagrand},   author         = {O. Talagrand},
775   year           = 1997,   year           = 1997,
# Line 759  Line 778 
778   volume         = {75},   volume         = {75},
779   pages          = {191--209},   pages          = {191--209},
780                    }                    }
781    
782  @book{tar:87,  @book{tar:87,
783   author         = {A. Tarantola},   author         = {A. Tarantola},
784   title          = {Inverse Problem Theory: Methods for data fitting   title          = {Inverse Problem Theory: Methods for data fitting
785                    and model parameter estimation},                    and model parameter estimation},
786   year           = 1987,   year           = 1987,
787   publisher      = {Elsevier},   publisher      = {Elsevier},
788   address        = {Amsterdam},   address        = {Amsterdam},
789   pages          = {629 pp.},   pages          = {629 pp.},
790                    }                    }
791                                                                      
792  @techreport{tha:87,  @techreport{tha:87,
793   author         = {W.C. Thacker},   author         = {W.C. Thacker},
794   year           = 1987,   year           = 1987,
# Line 781  Line 800 
800   pages          = {64 pp.},   pages          = {64 pp.},
801   address        = {Geesthacht (D)},   address        = {Geesthacht (D)},
802                    }                    }
803    
804  @Article{tha-lon:88,  @Article{tha-lon:88,
805   author         = {W.C. Thacker and R.B. Long},   author         = {W.C. Thacker and R.B. Long},
806   year           = 1988,   year           = 1988,
# Line 790  Line 809 
809   volume         = {93, C2},   volume         = {93, C2},
810   pages          = {1,227--1,240},   pages          = {1,227--1,240},
811                    }                    }
812    
813  @Article{tha:88,  @Article{tha:88,
814   author         = {W.C. Thacker},   author         = {W.C. Thacker},
815   year           = 1988,   year           = 1988,
# Line 800  Line 819 
819   volume         = {93},   volume         = {93},
820   pages          = {10,655--10,665},   pages          = {10,655--10,665},
821                    }                    }
822    
823  @Article{tha:89,  @Article{tha:89,
824   author         = {W.C. Thacker},   author         = {W.C. Thacker},
825   year           = 1989,   year           = 1989,
# Line 810  Line 829 
829   volume         = {94, C5},   volume         = {94, C5},
830   pages          = {6,177--6,196},   pages          = {6,177--6,196},
831                    }                    }
832    
833  @Article{tha-rag:94,  @Article{tha-rag:94,
834   author         = {W.C. Thacker and R. Raghunath},   author         = {W.C. Thacker and R. Raghunath},
835   year           = 1994,   year           = 1994,
# Line 820  Line 839 
839   volume         = {99, C5},   volume         = {99, C5},
840   pages          = {10,131--10,141},   pages          = {10,131--10,141},
841                    }                    }
842    
843  @Article{tzi-tha:89,  @Article{tzi-tha:89,
844   author         = {E. Tziperman and W.C. Thacker},   author         = {E. Tziperman and W.C. Thacker},
845   year           = {1989},   year           = {1989},
# Line 830  Line 849 
849   volume         = {19},   volume         = {19},
850   pages          = {1471--1485},   pages          = {1471--1485},
851                    }                    }
852    
853  @Article{tzi-eta:92a,  @Article{tzi-eta:92a,
854   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
855                    S. Hwang},                    S. Hwang},
# Line 841  Line 860 
860   volume         = {22},   volume         = {22},
861   pages          = {1434--1457},   pages          = {1434--1457},
862                    }                    }
863    
864  @Article{tzi-eta:92b,  @Article{tzi-eta:92b,
865   author         = {E. Tziperman and W.C. Thacker and R.B. Long and   author         = {E. Tziperman and W.C. Thacker and R.B. Long and
866                    S. Hwang and S.R. Rintoul},                    S. Hwang and S.R. Rintoul},
# Line 852  Line 871 
871   volume         = {22},   volume         = {22},
872   pages          = {1458--1485},   pages          = {1458--1485},
873                    }                    }
874    
875  @book{wun:96,  @book{wun:96,
876   author         = {C. Wunsch},   author         = {C. Wunsch},
877   title          = {The ocean circulation inverse problem},   title          = {The ocean circulation inverse problem},
878   year           = 1996,   year           = 1996,
879   publisher      = cup,   publisher      = cup,
880   address        = {Cambridge (UK)},   address        = {Cambridge (UK)},
881   pages          = {442 pp.},   pages          = {442 pp.},
882                    }                    }
883                                                                      
884  @Article{zha-mar:99,  @Article{zha-mar:99,
885   author         = {K.Q. Zhang and J. Marotzke},   author         = {K.Q. Zhang and J. Marotzke},
886   year           = 1999,   year           = 1999,
# Line 947  Line 966 
966  }  }
967    
968  @inproceedings{adcroft:04c,  @inproceedings{adcroft:04c,
969    author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall    author =       {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
970                    and P. Heimbach},                    and P. Heimbach},
971    title =        {Overview of the Formulation and Numerics of the {MIT}GCM},    title =        {Overview of the Formulation and Numerics of the {MIT}GCM},
972    booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,    booktitle =   {Proceedings of the ECMWF seminar series on Numerical Methods,
973                   Recent developments in numerical methods for atmosphere and                   Recent developments in numerical methods for atmosphere and
974                   ocean modelling},                   ocean modelling},
975    year =         2004,    year =         2004,
976    pages =        {139-149},    pages =        {139-149},
# Line 971  Line 990 
990  }  }
991    
992  @Article{visbeck:97,  @Article{visbeck:97,
993    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {M. Visbeck and J. Marshall and T. Haine and M. Spall},
994    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
                   coarse-resolution ocean circulation models},  
995    journal =      jpo,    journal =      jpo,
996    year =         1997,    year =         1997,
997    volume =       27,    volume =       27,
# Line 1113  Line 1131 
1131    
1132  @Article{griffies:00,  @Article{griffies:00,
1133    author =       {Griffies, S.,M. and Hallberg, R.,W.},    author =       {Griffies, S.,M. and Hallberg, R.,W.},
1134    title =        {Biharmonic friction with a Smagorinsky-like viscosity for    title =        {Biharmonic friction with a {Smagorinsky}-like viscosity for
1135                    use in large-scale eddy-permitting ocean models},                    use in large-scale eddy-permitting ocean models},
1136    journal =      mwr,    journal =      mwr,
1137    year =         2000,    year =         2000,
# Line 1142  Line 1160 
1160    pages =        {221-244}    pages =        {221-244}
1161  }  }
1162    
1163    @Article{Cox87,
1164      author =       {M. D. Cox},
1165      title =        {An isopycnal diffusion in a z-coordinate ocean model},
1166      journal =      {Ocean modelling},
1167      year =         1987,
1168      volume =       74,
1169      pages =        {1-5 (Unpublished manuscript)}
1170    }
1171    
1172    @Article{gretal:98,
1173      author =       {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J.  K. Dukowicz and R. D. Smith},
1174      title =        {Isoneutral diffusion in a z-coordinate ocean model},
1175      journal =      jpo,
1176      year =         1998,
1177      volume =       28,
1178      pages =        {805-830}
1179    }
1180    
1181    @ARTICLE{gr:98,
1182      author =       {S. M. Griffies},
1183      title =        {The {Gent-McWilliams} Skew Flux},
1184      journal =      jpo,
1185      year =         1998,
1186      volume =       28,
1187      pages =        {831-841}
1188    }
1189    
1190    
1191    @Article{gkw:91,
1192      author =       {R. Gerdes and C. Koberle and J. Willebrand},
1193      title =        {The influence of numerical advection schemes on the results of ocean general circulation models},
1194      journal =      climd,
1195      year =         1991,
1196      volume =       5,
1197      number =       4,
1198      pages =        {211-226},
1199      doi   =        {10.1007/BF00210006}
1200    }
1201    
1202  @Article{dm:95,  @Article{dm:95,
1203    author =       {Danabasoglu, G. and McWilliams J.C.},    author =       {G. Danabasoglu and J. C. McWilliams},
1204    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},    title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1205    journal =      jclim,    journal =      jclim,
1206    year =         1995,    year =         1995,
# Line 1152  Line 1209 
1209    pages =        {2967-2987}    pages =        {2967-2987}
1210  }  }
1211    
 @Article{ldd:97,  
   author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},  
   title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},  
   journal =      jpo,  
   year =         1997,  
   volume =       27,  
   number =       11,  
   pages =        {2418-2447}  
 }  
   
1212  @Article{gkw:99,  @Article{gkw:99,
1213    author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},    author =       {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1214    title =        {Mechanisms for spreading of Mediterranean water in    title =        {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
                   coarse-resolution numerical models},  
1215    journal =      jpo,    journal =      jpo,
1216    year =         1999,    year =         1999,
1217    volume =       29,    volume =       29,
# Line 1199  Line 1245 
1245  @Article{molteni:03,  @Article{molteni:03,
1246    author =       {F. Molteni},    author =       {F. Molteni},
1247    title =        {Atmospheric simulations using a {GCM} with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1248                    parametrization, {I}: Model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1249                    multidecadal experiments},                    multidecadal experiments},
1250    journal =      climd,    journal =      climd,
1251    year =         2003,    year =         2003,
# Line 1297  Line 1343 
1343    PAGES       = "525-531"    PAGES       = "525-531"
1344  }  }
1345    
1346  @ARTICLE{hib79,  @ARTICLE{hib79,
1347    author =       {Hibler, III, W. D.},    author =       {Hibler, III, W. D.},
1348    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",    TITLE       = "A Dynamic Thermodynamic Sea Ice Model",
1349    JOURNAL     = jpo,    JOURNAL     = jpo,
# Line 1321  Line 1367 
1367    JOURNAL     = jpo,    JOURNAL     = jpo,
1368    YEAR        = 1997,    YEAR        = 1997,
1369    VOLUME      = 27,    VOLUME      = 27,
1370    PAGES       = "1849-1867"    PAGES       = "1849--1867"
1371    }
1372    
1373    @Article{hun01,
1374      author =       {Elizabeth C. Hunke},
1375      title =        {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1376                      Model: Linearization Issues},
1377      journal =      jcp,
1378      year =         2001,
1379      volume =       170,
1380      pages =        {18--38},
1381      doi =          {10.1006/jcph.2001.6710}
1382  }  }
1383    
1384  @ARTICLE{zha00,  @ARTICLE{zha00,
# Line 1330  Line 1387 
1387    JOURNAL     = jgr,    JOURNAL     = jgr,
1388    YEAR        = 2000,    YEAR        = 2000,
1389    VOLUME      = 105,    VOLUME      = 105,
1390    PAGES       = "3325-3338"    PAGES       = "3325--3338"
1391  }  }
1392    
1393  @Article{Shapiro_70,  @Article{Shapiro_70,
# Line 1345  Line 1402 
1402    
1403  @TechReport{Dutkiewicz_etal_05,  @TechReport{Dutkiewicz_etal_05,
1404    author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},    author =       {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1405    title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and    title =        {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1406                    its Coupling to a Two-Dimensional Atmospheric Model: Uses                    its Coupling to a Two-Dimensional Atmospheric Model: Uses
1407                    in Climate Change Studies, Report 122},                    in Climate Change Studies, Report 122},
1408    institution =  {MIT Joint Program of the Science and Policy of Global Change},    institution =  {MIT Joint Program of the Science and Policy of Global Change},
1409    year =         {2005},    year =         {2005},
# Line 1369  Line 1426 
1426    
1427  @Article{McKinley_etal_04,  @Article{McKinley_etal_04,
1428    author =       {G. McKinley and M. J. Follows and J. C. Marshall},    author =       {G. McKinley and M. J. Follows and J. C. Marshall},
1429    title =        {Mechanisms of air-sea CO$_2$ flux variability in the    title =        {Mechanisms of air-sea CO$_2$ flux variability in the
1430                    Equatorial Pacific and the North Atlantic},                    Equatorial Pacific and the North Atlantic},
1431    journal =      {Global Biogeochemical Cycles},    journal =      {Global Biogeochemical Cycles},
1432    year =         {2004},    year =         {2004},
# Line 1411  Line 1468 
1468   editor       = {Pfafflin and Zeigler},   editor       = {Pfafflin and Zeigler},
1469   publisher    = {Gordon and Breach, Scientific Publishers}   publisher    = {Gordon and Breach, Scientific Publishers}
1470  }  }
1471    
1472  @Article{chou:92,  @Article{chou:92,
1473   author       = {M-D. Chou},   author       = {M-D. Chou},
1474   year         = {1992},   year         = {1992},
1475   title        = {A solar radiation model for use in climate studies.},   title        = {A solar radiation model for use in climate studies.},
1476   journal      = jas,   journal      = jas,
1477   volume       = {49},   volume       = {49},
1478   pages        = {762-772}   pages        = {762-772}
1479  }  }
# Line 1436  Line 1493 
1493   year         = {1994},   year         = {1994},
1494   title        = {An efficient thermal infrared radiation parameterization   title        = {An efficient thermal infrared radiation parameterization
1495  for use in general circulation models},  for use in general circulation models},
1496   institution  = {National Aeronautics and Space Administration},   institution  = {National Aeronautics and Space Administration},
1497   type         = {NASA Technical Memorandum},   type         = {NASA Technical Memorandum},
1498   number       = {104606-Vol 3},   number       = {104606-Vol 3},
1499   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1500   note         = {http://www.gmao.nasa.gov/}   note         = {http://www.gmao.nasa.gov/}
1501  }  }
# Line 1447  for use in general circulation models}, Line 1504  for use in general circulation models},
1504   author       = {R. H. Clarke},   author       = {R. H. Clarke},
1505   year         = {1970},   year         = {1970},
1506   title        = {Observational studies in the atmospheric boundary layer.},   title        = {Observational studies in the atmospheric boundary layer.},
1507   journal      = qjrms,   journal      = qjrms,
1508   volume       = {96},   volume       = {96},
1509   pages        = {91-114}   pages        = {91-114}
1510  }  }
# Line 1458  for use in general circulation models}, Line 1515  for use in general circulation models},
1515   title        = {NDVI-derived Land Cover Classification at Global Scales. },   title        = {NDVI-derived Land Cover Classification at Global Scales. },
1516   journal      = {Int'l J. Rem. Sens.} ,   journal      = {Int'l J. Rem. Sens.} ,
1517   volume       = {15},   volume       = {15},
1518   pages        = {3567-3586}   pages        = {3567-3586}
1519  }  }
1520    
1521  @Article{dorsell:89,  @Article{dorsell:89,
1522   author       = { J. L. Dorman and P. J. Sellers},   author       = { J. L. Dorman and P. J. Sellers},
1523   year         = {1989},   year         = {1989},
1524   title        = {A global climatology of albedo, roughness length and stomatal   title        = {A global climatology of albedo, roughness length and stomatal
1525  resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},  resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1526   journal      = jam,   journal      = jam,
1527   volume       = {28},   volume       = {28},
1528   pages        = {833-855}   pages        = {833-855}
1529  }  }
# Line 1476  resistance for atmospheric general circu Line 1533  resistance for atmospheric general circu
1533   year         = {1988},   year         = {1988},
1534   title        = { Design of a non-singular level 2.5 second-order closure   title        = { Design of a non-singular level 2.5 second-order closure
1535  model for the prediction of atmospheric turbulence. },  model for the prediction of atmospheric turbulence. },
1536   journal      = jas,   journal      = jas,
1537   volume       = {45},   volume       = {45},
1538   pages        = {113-132}   pages        = {113-132}
1539  }  }
# Line 1506  Continental Moisture Budget of the Unite Line 1563  Continental Moisture Budget of the Unite
1563   author       = {J. Kondo},   author       = {J. Kondo},
1564   year         = {1975},   year         = {1975},
1565   title        = {Air-sea bulk transfer coefficients in diabatic conditions.},   title        = {Air-sea bulk transfer coefficients in diabatic conditions.},
1566   journal      = blm,   journal      = blm,
1567   volume       = {9},   volume       = {9},
1568   pages        = {91-112}   pages        = {91-112}
1569  }  }
# Line 1515  Continental Moisture Budget of the Unite Line 1572  Continental Moisture Budget of the Unite
1572   author       = { Randal D. Koster and Max J. Suarez},   author       = { Randal D. Koster and Max J. Suarez},
1573   year         = {1991},   year         = {1991},
1574   title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},   title        = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1575   institution  = {National Aeronautics and Space Administration},   institution  = {National Aeronautics and Space Administration},
1576   type         = {NASA Technical Memorandum},   type         = {NASA Technical Memorandum},
1577   number       = {104538},   number       = {104538},
1578   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1579   note         = {http://www.gmao.nasa.gov/},   note         = {http://www.gmao.nasa.gov/},
1580  }  }
# Line 1537  in Climate Models as a Composite of Inde Line 1594  in Climate Models as a Composite of Inde
1594   year         = {1974},   year         = {1974},
1595   title        = { A parameterization for the absorption of solar radiation   title        = { A parameterization for the absorption of solar radiation
1596  in the Earth's atmosphere.  },  in the Earth's atmosphere.  },
1597   journal      = jas,   journal      = jas,
1598   volume       = {31},   volume       = {31},
1599   pages        = {118-133}   pages        = {118-133}
1600  }  }
# Line 1546  in the Earth's atmosphere.  }, Line 1603  in the Earth's atmosphere.  },
1603   author       = {W. G. Large and S. Pond},   author       = {W. G. Large and S. Pond},
1604   year         = {1981},   year         = {1981},
1605   title        = {Open ocean momentum flux measurements in moderate to strong winds.},   title        = {Open ocean momentum flux measurements in moderate to strong winds.},
1606   journal      = jpo,   journal      = jpo,
1607   volume       = {11},   volume       = {11},
1608   pages        = {324-336}   pages        = {324-336}
1609  }  }
# Line 1556  in the Earth's atmosphere.  }, Line 1613  in the Earth's atmosphere.  },
1613   year         = {1992},   year         = {1992},
1614   title        = {  Relaxed Arakawa Schubert: A parameterization of moist   title        = {  Relaxed Arakawa Schubert: A parameterization of moist
1615  convection for general circulation models.},  convection for general circulation models.},
1616   journal      = mwr,   journal      = mwr,
1617   volume       = {120},   volume       = {120},
1618   pages        = {978-1002}   pages        = {978-1002}
1619  }  }
# Line 1574  convection for general circulation model Line 1631  convection for general circulation model
1631   author       = {R. W. Reynolds and T. M. Smith},   author       = {R. W. Reynolds and T. M. Smith},
1632   year         = {1994},   year         = {1994},
1633   title        = {Improved global sea surface temperature analyses using optimum interpolation.},   title        = {Improved global sea surface temperature analyses using optimum interpolation.},
1634   journal      = jclim,   journal      = jclim,
1635   volume       = {7},   volume       = {7},
1636   pages        = {929-948}   pages        = {929-948}
1637  }  }
# Line 1584  convection for general circulation model Line 1641  convection for general circulation model
1641   year         = {1987},   year         = {1987},
1642   title        = {  A computation of the stratospheric   title        = {  A computation of the stratospheric
1643  diabatic circulation using an accurate radiative transfer model},  diabatic circulation using an accurate radiative transfer model},
1644   journal      = jas,   journal      = jas,
1645   volume       = {44},   volume       = {44},
1646   pages        = {859-876}   pages        = {859-876}
1647  }  }
# Line 1594  diabatic circulation using an accurate r Line 1651  diabatic circulation using an accurate r
1651   year         = {1988},   year         = {1988},
1652   title        = {  The roles of dry convection, cloud-radiation feedback processes   title        = {  The roles of dry convection, cloud-radiation feedback processes
1653  and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },  and the influence of recent improvements in the parameterization of convection in the GLA GCM.  },
1654   journal      = mwr,   journal      = mwr,
1655   volume       = {116},   volume       = {116},
1656   pages        = {2366-2387}   pages        = {2366-2387}
1657  }  }
# Line 1604  and the influence of recent improvements Line 1661  and the influence of recent improvements
1661   year         = {1996},   year         = {1996},
1662   title        = {  Dynamical aspects of climate simulations Using the GEOS   title        = {  Dynamical aspects of climate simulations Using the GEOS
1663  General Circulation Model},  General Circulation Model},
1664   institution  = {National Aeronautics and Space Administration},   institution  = {National Aeronautics and Space Administration},
1665   type         = {NASA Technical Memorandum},   type         = {NASA Technical Memorandum},
1666   number       = {104606 Volume 10},   number       = {104606 Volume 10},
1667   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},   address      = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1668   note         = {http://www.gmao.nasa.gov/},   note         = {http://www.gmao.nasa.gov/},
1669  }  }
# Line 1616  General Circulation Model}, Line 1673  General Circulation Model},
1673   year         = {1974},   year         = {1974},
1674   title        = {Heat and mass transfer between a rough wall and   title        = {Heat and mass transfer between a rough wall and
1675  turbulent fluid flow at high Reynolds and Peclet numbers.  },  turbulent fluid flow at high Reynolds and Peclet numbers.  },
1676   journal      = jfm,   journal      = jfm,
1677   volume       = {62},   volume       = {62},
1678   pages        = {601-623}   pages        = {601-623}
1679  }  }
# Line 1626  turbulent fluid flow at high Reynolds an Line 1683  turbulent fluid flow at high Reynolds an
1683   year         = {1977},   year         = {1977},
1684   title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious   title        = {  A numerical experiment on pollutant dispersion in a horizontally-homogenious
1685  atmospheric boundary layer.},  atmospheric boundary layer.},
1686   journal      = {Atmos. Environ.},   journal      = {Atmos. Environ.},
1687   volume       = {11},   volume       = {11},
1688   pages        = {1015-1024}   pages        = {1015-1024}
1689  }  }
# Line 1635  atmospheric boundary layer.}, Line 1692  atmospheric boundary layer.},
1692   author       = {J. Zhou and Y.C. Sud and K.-M. Lau},   author       = {J. Zhou and Y.C. Sud and K.-M. Lau},
1693   year         = {1995},   year         = {1995},
1694   title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},   title        = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1695   journal      = qjrms,   journal      = qjrms,
1696   volume       = {122},   volume       = {122},
1697   pages        = {903-927}   pages        = {903-927}
1698  }  }
1699    
1700  @Article{breth:99,  @Article{breth:99,
1701   author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond   author         = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1702                     and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov                     and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1703                     and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and                     and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1704                     B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},                     B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1705   year           = 1999,   year           = 1999,
1706   title          = {An intercomparison of radiatively driven entrainment and turbulence   title          = {An intercomparison of radiatively driven entrainment and turbulence
1707                    in a smoke cloud, as simulated by different numerical models.},                    in a smoke cloud, as simulated by different numerical models.},
1708   journal        = qjrms,   journal        = qjrms,
1709   volume         = {125},   volume         = {125},
1710   pages          = {391-423}   pages          = {391-423}
1711                    }                    }
1712    
1713  @Article{bm:99,  @Article{bm:99,
1714   author         = {A. C. Bushell and G.M. Martin},   author         = {A. C. Bushell and G.M. Martin},
1715   year           = 1999,   year           = 1999,
1716   title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},   title          = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1717   journal        = {Climate Dyn.},   journal        = {Climate Dyn.},
1718   volume         = {15},   volume         = {15},
1719   pages          = {293-318}   pages          = {293-318}
1720                    }                    }
1721    
1722  @Article{Inn:01,  @Article{Inn:01,
1723   author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},   author         = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1724   year           = 2001,   year           = 2001,
1725   title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;   title          = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1726                    Implications for the Simulation of the Madden-Julian Oscillation.},                    Implications for the Simulation of the Madden-Julian Oscillation.},
1727   journal        = {Climate Dyn.},   journal        = {Climate Dyn.},
1728   volume         = {17},   volume         = {17},
1729   pages          = {777-794}   pages          = {777-794}
1730                    }                    }
1731    
1732  @Article{kal:89,  @Article{kal:89,
1733   author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and   author         = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1734                     J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},                     J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1735   year           = 1989,   year           = 1989,
1736   title          = {Rules for Interchange of Physical Parameterizations.},   title          = {Rules for Interchange of Physical Parameterizations.},
1737   journal        = bams,   journal        = bams,
1738   volume         = {70},   volume         = {70},
1739   pages          = {620-622}   pages          = {620-622}
1740                    }                    }
1741    
1742  @Article{wo:98,  @Article{wo:98,
1743   author         = {D. Williamson and J.G. Olsen},   author         = {D. Williamson and J.G. Olsen},
1744   year           = 1998,   year           = 1998,
1745   title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},   title          = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1746   journal        = mwr,   journal        = mwr,
1747   volume         = {126},   volume         = {126},
1748   pages          = {991-1000}   pages          = {991-1000}
1749                    }                    }
1750    
# Line 1804  atmospheric boundary layer.}, Line 1861  atmospheric boundary layer.},
1861    number =       {393--426}    number =       {393--426}
1862  }  }
1863    
1864  @ARTICLE{menemenlis05,  @Article{menemenlis05,
1865    author =       {D. Menemenlis and C. Hill and A. Adcroft and    author =       {D. Menemenlis and C. Hill and A. Adcroft and
1866                    J.-M. Campin and B. Cheng and B. Ciotti and                    J.-M. Campin and B. Cheng and B. Ciotti and
1867                    I. Fukumori and A. Koehl and P. Heimbach and                    I. Fukumori and A. Koehl and P. Heimbach and
# Line 1922  atmospheric boundary layer.}, Line 1979  atmospheric boundary layer.},
1979    volume =       31,    volume =       31,
1980    pages =        {285--296}}    pages =        {285--296}}
1981    
1982    @Article{kalnay96,
1983      author =       {E. Kalnay and M. Kanamitsu and R. Kistler and
1984                      W. Collins and D. Deaven and L. Gandin and
1985                      M. Iredell and S. Saha and G. White and J. Woollen
1986                      and Y. Zhu and M. Chelliah and W. Ebisuzaki and
1987                      W. Higgins and J. Janowiak and K. C. Mo and
1988                      C. Ropelewski and J. Wang and A. Leetmaa and
1989                      R. Reynolds and R. Jenne and D. Joseph},
1990      title =        {The {NMC/NCAR} 40-Year Reanalysis Project},
1991      journal =      bams,
1992      year =         1996,
1993      volume =       77,
1994      pages =        {437--471}
1995    }
1996    
1997    @Article{klymaklegg10,
1998      author =       {Klymak, Jody M. and Sonya M. Legg},
1999      title =        {A simple mixing scheme for models that resolve
2000                      breaking internal waves},
2001      journal =      om,
2002      year =         2010,
2003      volume =       33,
2004      pages =        {224--234},
2005      doi =          {10.1016/j.ocemod.2010.02.005}
2006    }
2007    
2008  @Article{losch08,  @Article{losch08,
2009    author =       {Martin Losch},    author =       {Martin Losch},
2010    title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean    title =        {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
# Line 1933  atmospheric boundary layer.}, Line 2016  atmospheric boundary layer.},
2016    doi =          {10.1029/2007JC004368}    doi =          {10.1029/2007JC004368}
2017  }  }
2018    
2019    @Article{losch10:_mitsim,
2020      author =       {Losch, Martin and Menemenlis, Dimitris and Campin,
2021                      Jean-Michel and Heimbach, Patrick and Hill, Chris},
2022      title =        {On the formulation of sea-ice models. {P}art 1:
2023                      Effects of different solver implementations and
2024                      parameterizations},
2025      journal =      om,
2026      year =         2010,
2027      volume =       33,
2028      number =       {1--2},
2029      pages =        {129--144},
2030      doi =          {10.1016/j.ocemod.2009.12.008}
2031    }
2032    
2033    @Article{losch14:_jfnk,
2034      author =       {Martin Losch and Annika Fuchs and
2035                      Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
2036      title =        {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
2037                      for a Coupled Sea Ice-Ocean Model },
2038      journal =      jcp,
2039      volume =       {257},
2040      number =       {A},
2041      pages =        {901--910},
2042      year =         {2014},
2043      doi =          {10.1016/j.jcp.2013.09.026}
2044    }
2045    
2046    @Article{lemieux09,
2047      author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay},
2048      title =        {Numerical Convergence of Viscous-Plastic Sea Ice
2049                      Models},
2050      journal =      jgr,
2051      year =         2009,
2052      volume =       114,
2053      number =       {C05009},
2054      doi =          {10.1029/2008JC005017}}
2055    
2056    @Article{lemieux10,
2057      author =       {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay and Jan
2058                      Sedl{\'a}{\v{c}}ek and Paul Tupper and Stephen
2059                      Thomas and David Huard and Jean-Pierre Auclair},
2060      title =        {Improving the Numerical Convergence of
2061                      Viscous-Plastic Sea Ice Models with the
2062                      {J}acobian-Free {N}ewton-{K}rylov Method},
2063      journal =      jcp,
2064      year =         2010,
2065      volume =       229,
2066      pages =        {2840--2852},
2067      doi =          {10.1016/j.jcp.2009.12.011c}}
2068    
2069    @article{knoll04:_jfnk,
2070      Author =       {D.A. Knoll and D.E. Keyes},
2071      Title =        {{J}acobian-free {N}ewton-{K}rylov Methods: a Survey
2072                      of Approaches and Applications},
2073      Journal =      jcp,
2074      Year =         2004,
2075      Volume =       193,
2076      Pages =        {357--397},
2077      doi =          {10.1016/j.jcp.2003.08.010},
2078    }
2079    
2080    @Article{saad93:_fgmres,
2081      author =       {Y. Saad},
2082      title =        {A Flexible Inner-Outer Preconditioned {GMRES}
2083                      Method},
2084      journal =      siscicom,
2085      year =         1993,
2086      volume =       14,
2087      number =       2,
2088      pages =        {461--469}}
2089    
2090  @Article{Dutay02,  @Article{Dutay02,
2091   author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr   author         = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
2092      and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows      and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
# Line 1949  atmospheric boundary layer.}, Line 2103  atmospheric boundary layer.},
2103                  }                  }
2104    
2105  @Article{marsh06,  @Article{marsh06,
2106   author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},   author         = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
2107   year           = 2006,   year           = 2006,
2108   title          = {Estimates and Implications of Surface Eddy Diffusivity   title          = {Estimates and Implications of Surface Eddy Diffusivity
2109                     in the Southern Ocean Derived from Tracer Transport},                     in the Southern Ocean Derived from Tracer Transport},
2110   journal        = jpo,   journal        = jpo,
2111   volume         = {36},          number= {},             month   = {},   volume         = {36},          number= {},             month   = {},
# Line 1967  atmospheric boundary layer.}, Line 2121  atmospheric boundary layer.},
2121    publisher =    {IEEE},    publisher =    {IEEE},
2122  }  }
2123    
2124    @Article{stevens:90,
2125      author =       {Stevens, D. P.},
2126      title =        {On Open Boundary Conditions for Three Dimensional
2127                      Primitive Equation Ocean Circulation Models},
2128      journal =      {Geophys. Astrophys. Fl. Dyn.},
2129      year =         1990,
2130      volume =       51,
2131      pages =        {103--133}
2132    }
2133    
2134    
2135    @Article{moum96,
2136      author        = {Moum, J.N.},
2137      title         = {Energy-containing scales of turbulence in the ocean thermocline},
2138      journal       = jgr,
2139      year          = 1996,
2140      volume        = {101 (C3)},
2141      pages         = {14095--14109}
2142    }
2143    
2144    @Article{thorpe77,
2145      author        = {Thorpe, S.A.},
2146      title         = {Turbulence and mixing in a Scottish loch},
2147      journal       = ptrsl,
2148      year          = 1977,
2149      volume        = {286},
2150      pages         = {125--181}
2151    }
2152    
2153    @Article{wesson94,
2154      author        = {Wesson, J.C. and Gregg, M.C.},
2155      title         = {Mixing at Camarinal Sill in the Strait of Gibraltar},
2156      journal       = jgr,
2157      year          = 1994,
2158      volume        = {99 (C5)},
2159      pages         = { 9847--9878}
2160    }
2161    
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