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revision 1.25 by jmc, Fri Sep 23 01:03:47 2005 UTC revision 1.32 by heimbach, Thu Jan 17 21:13:04 2008 UTC
# Line 71  Line 71 
71                    Argonne (ILL), 90439; USA},                    Argonne (ILL), 90439; USA},
72   note           = {http://www.mcs.anl.gov/autodiff/},   note           = {http://www.mcs.anl.gov/autodiff/},
73                    }                    }
74    
75    @ARTICLE{bugi-hill:06,
76      author = {V. Bugnion and C. Hill},
77      title = {Equilibration mechanisms in an adjoint ocean general
78               circulation model},
79      journal = {Ocean Dynamics},
80      year = {2006},
81      volume = {56},
82      number = {1},
83      pages = {51-61},
84      doi   = {10.1007/s10236-005-0052-z},
85    }
86    
87  @techreport{bis-roh:97,  @techreport{bis-roh:97,
88   author         = {C. Bishof and L. Roh},   author         = {C. Bishof and L. Roh},
# Line 118  Line 130 
130   volume         = {120},   volume         = {120},
131   pages          = {1367--1387},   pages          = {1367--1387},
132                    }                    }
133    
134    @ARTICLE{dutk-etal:06,
135      author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
136      title = {Controls on ocean productivity and air-sea carbon flux:
137               An adjoint model sensitivity study},
138      journal = grl,
139      year = {2006},
140      volume = {33},
141      pages  = {L02603},
142      doi    = {10.1029/2005GL024987},
143    }
144    
145  @Article{err:97,  @Article{err:97,
146   author         = {R.M. Errico},   author         = {R.M. Errico},
# Line 358  Line 381 
381   pages          = {658-669}   pages          = {658-669}
382                    }                    }
383    
384    @Article{jam-oze:86,
385     author         = {B.M. Jamart and J. Ozer},
386     year           = {1986},
387     title          = {Numerical boundary layers and spurious residual flows},
388     journal        = jgr,
389     volume         = {91},
390     pages          = {10,621-10,631}
391                      }
392    
393  @book{kas-eta:00,  @book{kas-eta:00,
394   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
395                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 454  Line 486 
486   pages          = {38 pp.},   pages          = {38 pp.},
487   address        = {Delft (NL)},   address        = {Delft (NL)},
488                    }                    }
489    
490    @ARTICLE{losc-heim:06,
491      author = {M. Losch and P. Heimbach},
492      title = {Adjoint sensitivity of an ocean general circulation model
493               to bottom topography},
494      journal = jpo,
495      year = {2006},
496      volume = {{in press}},
497      url    = {http://mitgcm.org/pdfs/Los2006a.pdf},
498    }
499    
500    
501  @Article{maro-wun:93,  @Article{maro-wun:93,
502   author         = {J. Marotzke and C. Wunsch},   author         = {J. Marotzke and C. Wunsch},
# Line 508  Line 551 
551   journal        = jms,   journal        = jms,
552   volume         = {18},   volume         = {18},
553   pages          = {115--134},   pages          = {115--134},
554     url            = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
555     doi            = {10.1016/S0924-7963\%2898\%2900008-6},
556                    }                    }
557    
558  @Article{mcw:96,  @Article{mcw:96,
# Line 528  Line 573 
573  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are  %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
574  %%   also available.  %%   also available.
575    
576    @incollection{naum-etal:06,
577            Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
578            Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
579            Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
580            Pages = {~},
581            Publisher = {TU Delft},
582            Title = {Adjoint code by source transformation with OpenAD/F},
583            Year = {2006}}
584    
585  @TechReport{rew:97,  @TechReport{rew:97,
586    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},    author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
587    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},    title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
# Line 574  Line 628 
628   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
629                    }                    }
630    
631    @article{utke-etal:08,
632            Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
633            Date-Modified = {2007-11-19 10:15:08 -0500},
634            Journal = {{ACM} Transactions on Mathematical Software},
635            Pages = {~},
636            Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
637            Volume = {34(4)},
638            Year = {2008}}
639    
640  @Article{DaSilva94,  @Article{DaSilva94,
641   author         = {A. da Silva and A. C. Young and S. Levitus},   author         = {A. da Silva and A. C. Young and S. Levitus},
642   year           = 1994,   year           = 1994,
# Line 583  Line 646 
646   publisher      = {U.S. Department of Commerce},   publisher      = {U.S. Department of Commerce},
647   address        = {Washington, D.C. (USA)},   address        = {Washington, D.C. (USA)},
648   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},   note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
649     url            = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
650                    }                    }
651    
652  @techreport{sta-eta:97,  @techreport{stam-etal:97,
653   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
654                    Q. Zhang and J. Marotzke and J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
655                    C. Hill},                    C. Hill},
# Line 601  Line 665 
665   address        = {Cambridge (MA), USA},   address        = {Cambridge (MA), USA},
666                    }                    }
667    
668  @Article{sta-eta:01,  @ARTICLE{stam-etal:02,
669   author         = {D. Stammer and C. Wunsch and R. Giering and    author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
670                    C. Eckert and P. Heimbach and J. Marotzke and    title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
671                    A. Adcroft and C. Hill and J. Marshall},    journal = jgr,
672   year           = 2001,    year = {2002a},
673   title          = {The global ocean circulation during 1992 -- 1997,    volume = {107(C9)},
674                    estimated from ocean observations and a general    pages = {3118},
675                    circulation model},    doi   = {10.1029/2001JC000888},
676   journal        = jgr,  }
677   note           = {in press},  
                   }  
678    
679  @Article{Stommel66,  @Article{Stommel66,
680   author         = {H. Stommel},   author         = {H. Stommel},
# Line 777  Line 840 
840    year =         1997,    year =         1997,
841    volume =       102,    volume =       102,
842    number =       {C3},    number =       {C3},
843    pages =        {5733-5752}    pages =        {5733-5752},
844      url      =     {http://mitgcm.org/pdfs/96JC02775.pdf},
845  }  }
846    
847  @Article{marshall:97b,  @Article{marshall:97b,
# Line 788  Line 852 
852    year =         1997,    year =         1997,
853    volume =       102,    volume =       102,
854    number =       {C3},    number =       {C3},
855    pages =        {5753-5766}    pages =        {5753-5766},
856      url      =     {http://mitgcm.org/pdfs/96JC02776.pdf},
857  }  }
858    
859  @Article{adcroft:97,  @Article{adcroft:97,
# Line 798  Line 863 
863    journal =      mwr,    journal =      mwr,
864    year =         1997,    year =         1997,
865    volume =       125,    volume =       125,
866    pages =        {2293-2315}    pages =        {2293-2315},
867      url   =        {http://mitgcm.org/pdfs/mwr_1997.pdf},
868      doi       =    {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
869  }  }
870    
871  @Article{adcroft:04a,  @Article{adcroft:04a,
# Line 808  Line 875 
875    journal =      om,    journal =      om,
876    year =         2004,    year =         2004,
877    volume =       7,    volume =       7,
878    pages =        {269-284}    pages =        {269-284},
879      doi   =        {10.1016/j.ocemod.2003.09.003},
880  }  }
881    
882  @Article{adcroft:04b,  @Article{adcroft:04b,
# Line 818  Line 886 
886    journal =      mwr,    journal =      mwr,
887    year =         2004,    year =         2004,
888    volume =       132,    volume =       132,
889    pages =        {2845-2863}    pages =        {2845-2863},
890      url   =        {http://mitgcm.org/pdfs/mwr_2004.pdf},
891      doi     =      {10.1175/MWR2823.1},
892  }  }
893    
894  @Article{marshall:04,  @Article{marshall:04,
# Line 827  Line 897 
897    journal =      mwr,    journal =      mwr,
898    year =         2004,    year =         2004,
899    volume =       132,    volume =       132,
900    pages =        {2882-2894}    pages =        {2882-2894},
901      url   =        {http://mitgcm.org/pdfs/a_o_iso.pdf},
902      doi    =       {10.1175/MWR2835.1},
903  }  }
904    
905  @Article{visbeck:97,  @Article{visbeck:97,
# Line 854  Line 926 
926    pages =        {1-51}    pages =        {1-51}
927  }  }
928    
 @Article{marshall:98,  
   author =       {J. Marshall and H. Jones and C. Hill},  
   title =        {Efficient ocean modeling using non-hydrostatic algorithms},  
   journal =      {JMR},  
   year =         1998,  
   volume =       18,  
   pages =        {115-134}  
 }  
   
929  @Article{mjn:99,  @Article{mjn:99,
930    author =       {Marshall, J., Jamous, D and J. Nilsson},    author =       {Marshall, J., Jamous, D and J. Nilsson},
931    title =        {Reconciling `thermodynamic' and `dynamic' methods of    title =        {Reconciling `thermodynamic' and `dynamic' methods of
# Line 890  Line 953 
953    journal =      mwr,    journal =      mwr,
954    year =         1999,    year =         1999,
955    volume =       127,    volume =       127,
956    pages =        {1928-1936}    pages =        {1928-1936},
957      url   =        {http://mitgcm.org/pdfs/mwr_1999.pdf},
958      doi   =        {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
959  }  }
960    
961  @InProceedings{hill:99,  @InProceedings{hill:99,
# Line 1064  Line 1129 
1129  }  }
1130    
1131  @Article{molteni:03,  @Article{molteni:03,
1132    author =       {K. M. Trenberth and J. Olson and W. G. Large},    author =       {F. Molteni},
1133    title =        {Atmospheric simulations using a GCM with simplified physical    title =        {Atmospheric simulations using a {GCM} with simplified physical
1134                    parametrization, I model climatology and variability in                    parametrization, {I}: Model climatology and variability in
1135                    multidecadal experiments},                    multidecadal experiments},
1136    journal =      climd,    journal =      climd,
1137    year =         2003,    year =         2003,
# Line 1557  atmospheric boundary layer.}, Line 1622  atmospheric boundary layer.},
1622   volume         = {126},   volume         = {126},
1623   pages          = {991-1000}   pages          = {991-1000}
1624                    }                    }
1625    @TechReport{MPI-std-20,
1626      author =       {{Message Passing Interface Forum}}},
1627      title =        {{MPI}: A Message-Passing Interface standard (version 2.0)},
1628      institution =  {mpi-forum.org},
1629      year =         {1998},
1630    }
1631    
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