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revision 1.2 by adcroft, Tue Nov 13 17:59:05 2001 UTC revision 1.14 by jmc, Wed Jan 28 20:37:04 2004 UTC
# Line 1  Line 1 
1  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}  @string{arfm    = {Annu.~Rev.~Fluid Mech.}}
2  @string{bams    = {Bull.~Am.~Met.~Soc.}}  @string{bams    = {Bull.~Am.~Met.~Soc.}}
3  @string{blm     = {Bound.~Layer~Meteorol.}}  @string{blm     = {Bound.~Layer~Meteorol.}}
4    @string{climd   = {Clim.~Dynamics}}
5  @string{jgr     = {J.~Geophys.~Res.}}  @string{jgr     = {J.~Geophys.~Res.}}
6  @string{ijrs    = {Int.~J.~Remote Sensing}}  @string{ijrs    = {Int.~J.~Remote Sensing}}
7  @string{jas     = {J.~Atmos.~Sci.}}  @string{jas     = {J.~Atmos.~Sci.}}
# Line 10  Line 11 
11  @string{jfm     = {J.~Fluid Mech.}}  @string{jfm     = {J.~Fluid Mech.}}
12  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}  @string{jaot    = {J.~Atmos.~Ocean.~Technol.}}
13  @string{jms     = {J.~Mar.~Sys.}}  @string{jms     = {J.~Mar.~Sys.}}
14    @string{om      = {Ocean Modelling}}
15  @string{gaos    = {Global Atmos.~Ocean System}}  @string{gaos    = {Global Atmos.~Ocean System}}
16  @string{grl     = {Geophys.~Res.~Lett.}}  @string{grl     = {Geophys.~Res.~Lett.}}
17  @string{dsr     = {Deep Sea Res.}}  @string{dsr     = {Deep Sea Res.}}
# Line 250  Line 252 
252   pages          = {401 pp.},   pages          = {401 pp.},
253                    }                    }
254                                                                        
255    @incollection{gri:89,
256     author         = {A. Griewank},
257     year           = 1989,
258     title          = {On automatic differentiation},
259     booktitle      = {Mathematical Programming: Recent Developments and
260                      Applications},
261     pages          = {83--108},
262     editor         = {M. Iri and K. Tanabe},
263     publisher      = {Kluwer},
264     address        = {Dordrecht, NL},
265                      }
266    
267    @Article{gri:92,
268      author =       {A.~Griewank},
269      title =        {Achieving logarithmic growth of temporal and spatial
270      complexity in reverse {A}utomatic {D}ifferentiation},
271      journal       = {Optimization Methods and Software},
272      year          = {1992},
273      volume        = {1},
274      pages         = {35--54}
275    }
276    
277  @book{gri:00,  @book{gri:00,
278   author         = {A. Griewank},   author         = {A. Griewank},
279   title          = {Evaluating Derivatives. Principles and Techniques   title          = {Evaluating Derivatives. Principles and Techniques
# Line 271  Line 295 
295   volume         = {39},   volume         = {39},
296   pages          = {2038--3050},   pages          = {2038--3050},
297                    }                    }
298    
299    @Article{Haney,
300      author =       {R.L. Haney},
301      title =        {Surface thermal boundary conditions for ocean
302                      circulation models},
303      journal =      jpo,
304      year =         1971,
305      volume =       1,
306      pages =        {241--248}
307    }
308    
309  @Article{hil-eta:01,  @Article{hil-eta:01,
310   author         = {C. Hill and M. Follows and V. Bugnion and   author         = {C. Hill and M. Follows and V. Bugnion and
311                    J. Marshall},                    J. Marshall},
312   year           = {2001},   year           = {2002},
313   title          = {Spatial and Temporal Impacts of ocean general   title          = {Spatial and Temporal Impacts of ocean general
314                    circulation on carbon sequestration},                    circulation on carbon sequestration},
315   journal        = {journal ???},   journal        = {Global Biogeochemical Cycles},
316   note           = {submitted},   note           = {submitted},
317                    }                    }
318    
319    @Article{Holland75,
320     author         = {W.R. Holland and L. B. Lin},
321     year           = {1975a},
322     title          = {On the origin of mesoscale eddies and their contribution
323                       to the general circulation of the ocean. I. A preliminary
324                       numerical experiment},
325     journal        = jpo,
326     volume         = {5},
327     pages          = {642-657}
328                      }
329    
330    @Article{hol-lin:75b,
331     author         = {W.R. Holland and L. B. Lin},
332     year           = {1975b},
333     title          = {On the origin of mesoscale eddies and their contribution
334                       to the general circulation of the ocean. II. A parameter
335                       study},
336     journal        = jpo,
337     volume         = {5},
338     pages          = {658-669}
339                      }
340    
341  @book{kas-eta:00,  @book{kas-eta:00,
342   author         = {P. Kasibhatla and M. Heimann and P. Rayner and   author         = {P. Kasibhatla and M. Heimann and P. Rayner and
343                    N. Mahowald and R.G. Prinn and D.E. Hartley},                    N. Mahowald and R.G. Prinn and D.E. Hartley},
# Line 326  Line 382 
382   volume         = {38A},   volume         = {38A},
383   pages          = {97--110},   pages          = {97--110},
384                    }                    }
385    
386    @TechReport{lev:94a,
387      author =       {S. Levitus and T.P.Boyer},
388      title =        {{World Ocean Atlas 1994 Volume 3: Salinity}},
389      institution =  {NOAA Atlas NESDIS 3},
390      year =         1994,
391      OPTkey =       {},
392      OPTtype =      {},
393      OPTnumber =    {},
394      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
395      OPTmonth =     {},
396      OPTnote =      {},
397      OPTannote =    {}
398    }
399    
400    
401    @TechReport{Levitus94,
402      author =       {S. Levitus and T.P.Boyer},
403      title =        {{World Ocean Atlas 1994 Volume 4: Temperature}},
404      institution =  {NOAA Atlas NESDIS 4},
405      year =         1994,
406      OPTkey =       {},
407      OPTtype =      {},
408      OPTnumber =    {},
409      OPTaddress =   {U.S. Department of Commerce, Washington D.C.},
410      OPTmonth =     {},
411      OPTnote =      {},
412      OPTannote =    {}
413    }
414    
415    
416  @Article{lew-der:85,  @Article{lew-der:85,
417   author         = {J. Lewis and J. Derber},   author         = {J. Lewis and J. Derber},
# Line 412  Line 498 
498   volume         = {28},   volume         = {28},
499   pages          = {215--248},   pages          = {215--248},
500                    }                    }
501    
502    %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
503    %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
504    %% (Available from Unidata or in PostScript form by anonymous FTP from
505    %%   ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
506    %%   a hypertext version of the User's Guide available at
507    %%   http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
508    %%   Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
509    %%   also available.
510    
511    @TechReport{rew:97,
512      author =       {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
513      title =        {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
514                      An Interface for Data Access, Version 3},
515      institution =  {Unidata Program Center},
516      type =         {Report},
517      address =      {Boulder, Colorado},
518      year =         1997,
519      note =         {http://www.unidata.ucar.edu/packages/netcdf/},
520    }
521    
522    
523  @Article{res-eta:98,  @Article{res-eta:98,
524   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},   author         = {J.M. Restrepo and G.K. Leaf and A. Griewank},
525   year           = 1998,   year           = 1998,
526   title          = {Circumvening storage limitations in variational   title          = {Circumventing storage limitations in variational
527                    data assimilation studies},                    data assimilation studies},
528   journal        = {SIAM J. Sci. Comput.},   journal        = {SIAM J. Sci. Comput.},
529   volume         = {19},   volume         = {19},
# Line 446  Line 553 
553   publisher      = {Springer-Verlag},   publisher      = {Springer-Verlag},
554   address        = {Berlin (Germany)},   address        = {Berlin (Germany)},
555                    }                    }
556    
557    @Article{DaSilva94,
558     author         = {A. da Silva and A. C. Young and S. Levitus},
559     year           = 1994,
560     title          = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
561     journal        = {NOAA Atlas NESDIS},
562     volume         = {6},
563     publisher      = {U.S. Department of Commerce},
564     address        = {Washington, D.C. (USA)},
565     note           = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
566                      }
567    
568  @techreport{sta-eta:97,  @techreport{sta-eta:97,
569   author         = {D. Stammer and C. Wunsch and R. Giering and   author         = {D. Stammer and C. Wunsch and R. Giering and
570                    Q. Zhang and J. Marotzke an J. Marshall and                    Q. Zhang and J. Marotzke and J. Marshall and
571                    C. Hill},                    C. Hill},
572   year           = 1997,   year           = 1997,
573   title          = {The global ocean circulation estimated from   title          = {The global ocean circulation estimated from
# Line 472  Line 590 
590                    estimated from ocean observations and a general                    estimated from ocean observations and a general
591                    circulation model},                    circulation model},
592   journal        = jgr,   journal        = jgr,
593   note           = {submitted},   note           = {in press},
594                      }
595    
596    @Article{Stommel66,
597     author         = {H. Stommel},
598     year           = 1948,
599     title          = {The western intensification of wind-driven ocean currents},
600     journal        = {Trans. Am. Geophys. Union},
601     volume         = {29},
602     pages          = {206},
603                    }                    }
604    
605  @Article{tal-cou:87,  @Article{tal-cou:87,
# Line 623  Line 750 
750    
751    
752  @Article{marshall:97a,  @Article{marshall:97a,
753    author =       {Marshall, J., C. Hill, L. Perelman, and A. Adcroft},    author =       {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
754    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean    title =        {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
755                   modeling},                   modeling},
756    journal =      {JGR},    journal =      {JGR},
# Line 634  Line 761 
761  }  }
762    
763  @Article{marshall:97b,  @Article{marshall:97b,
764    author =       {Marshall, J., A. Adcroft, C. Hill, L. Perelman, and C. Heise},    author =       {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
765    title =        {A finite-volume, incompressible Navier Stokes model for    title =        {A finite-volume, incompressible Navier Stokes model for
766                    studies of the ocean on parallel computers},                    studies of the ocean on parallel computers},
767    journal =      {JGR},    journal =      {JGR},
# Line 645  Line 772 
772  }  }
773    
774  @Article{adcroft:97,  @Article{adcroft:97,
775    author =       {Adcroft, A.J., Hill, C.N. and J. Marshall},    author =       {Adcroft, A.J. and Hill, C.N. and J. Marshall},
776    title =        {Representation of topography by shaved cells in a height    title =        {Representation of topography by shaved cells in a height
777                    coordinate ocean model},                    coordinate ocean model},
778    journal =      {MWR},    journal =      {MWR},
# Line 654  Line 781 
781    pages =        {2293-2315}    pages =        {2293-2315}
782  }  }
783    
784    @Article{adcroft:04,
785      author =       {Adcroft, A.J. and J.-M. Campin},
786      title =        {Re-scaled height coordinates for accurate representation
787                      of free-surface flows in ocean circulation models},
788      journal =      om,
789      year =         2004,
790      note =         {in press}
791    }
792    
793  @Article{visbeck:97,  @Article{visbeck:97,
794    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},    author =       {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
795    title =        {Specification of eddy transfer coefficients in    title =        {Specification of eddy transfer coefficients in
# Line 679  Line 815 
815  }  }
816    
817  @Article{marshall:98,  @Article{marshall:98,
818    author =       {Marshall, J., Jones, H. and C. Hill},    author =       {J. Marshall and H. Jones and C. Hill},
819    title =        {Efficient ocean modeling using non-hydrostatic algorithms},    title =        {Efficient ocean modeling using non-hydrostatic algorithms},
820    journal =      {JMR},    journal =      {JMR},
821    year =         1998,    year =         1998,
# Line 720  Line 856 
856  @InProceedings{hill:99,  @InProceedings{hill:99,
857    author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},    author =       {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
858    title =        {A Strategy for Terascale Climate Modeling},    title =        {A Strategy for Terascale Climate Modeling},
859    booktitle =    {In Proceedings of the Eight ECMWF Workshop on the Use of Parallel Processors in Meteorology},    booktitle =    {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
860    year =         1999    year =         1999,
861      pages = {406-425},
862      publisher =    {World Scientific},
863  }  }
864    
865  @Article{wardle:00,  @Article{wardle:00,
# Line 738  Line 876 
876    author =       {Adcroft, A. and J.-M. Campin},    author =       {Adcroft, A. and J.-M. Campin},
877    title =        {Comparison of finite volume schemes and direct-space-time    title =        {Comparison of finite volume schemes and direct-space-time
878                    methods for ocean circulation models},                    methods for ocean circulation models},
879    journal =      {OM},    journal =      om,
880    year =         2002,    year =         2002,
881    note =         {in preparation}    note =         {in preparation}
882  }  }
# Line 746  Line 884 
884  @Article{adcroft:02,  @Article{adcroft:02,
885    author =       {Adcroft et al.},    author =       {Adcroft et al.},
886    title =        {Energy conversion in discrete numerical models},    title =        {Energy conversion in discrete numerical models},
887    journal =      {OM},    journal =      om,
888    year =         2002,    year =         2002,
889    note =         {in preparation}    note =         {in preparation}
890  }  }
# Line 764  Line 902 
902    
903  @Article{adcroft:98,  @Article{adcroft:98,
904    author =       {Adcroft, A. and Marshall, D.},    author =       {Adcroft, A. and Marshall, D.},
905    title =        {How slippery are coast-lines?},    title =        {How slippery are piecewise-constant coastlines in numerical
906                      ocean models?},
907    journal =      {Tellus},    journal =      {Tellus},
908    year =         {1998},    year =         1998,
909    OPTkey =       {},    volume =       50,
910    OPTvolume =    {},    number =       1,
911    OPTnumber =    {},    pages =        {95-108}
912    OPTpages =     {},  }
913    OPTmonth =     {},  
914    OPTnote =      {},  @PhdThesis{adcroft:95,
915    OPTannote =    {}    author =       {Adcroft, A.},
916      title =        {Numerical Algorithms for use in a Dynamical Model of the
917                      Ocean},
918      school =       {Imperial College, London},
919      year =         1995
920    }
921    
922    @Article{griffies:00,
923      author =       {Griffies, S.,M. and Hallberg, R.,W.},
924      title =        {Biharmonic friction with a Smagorinsky-like viscosity for
925                      use in large-scale eddy-permitting ocean models},
926      journal =      {MWR},
927      year =         2000,
928      volume =       128,
929      number =       8,
930      pages =        {2935-2946}
931    }
932    
933    @Article{wajsowicz:93,
934      author =       {Wajsowicz, R.},
935      title =        {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
936                      FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
937      journal =      {JCP},
938      year =         1993,
939      volume =       105,
940      number =       2,
941      pages =        {333-338}
942    }
943    
944    @Article{campin:02,
945      author =       {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
946      title =        {Conservation of properties in a free-surface model},
947      journal =      om,
948      year =         2004,
949      volume =       6,
950      pages =        {221-244}
951    }
952    
953    @Article{dm:95,
954      author =       {Danabasoglu, G. and McWilliams J.C.},
955      title =        {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
956      journal =      {JC},
957      year =         1995,
958      volume =       8,
959      number =       12,
960      pages =        {2967-2987}
961    }
962    
963    @Article{ldd:97,
964      author =       {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
965      title =        {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
966      journal =      {JPO},
967      year =         1997,
968      volume =       27,
969      number =       11,
970      pages =        {2418-2447}
971    }
972    
973    @Article{gkw:99,
974      author =       {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
975      title =        {Mechanisms for spreading of Mediterranean water in
976                      coarse-resolution numerical models},
977      journal =      {JPO},
978      year =         1999,
979      volume =       29,
980      number =       8,
981      pages =        {1682-1700}
982    }
983    
984    @Article{roe:85,
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1075    
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