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1 mlosch 1.36 @string{angl = {Ann.\ Glaciol.}}
2 heimbach 1.1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
3     @string{bams = {Bull.~Am.~Met.~Soc.}}
4     @string{blm = {Bound.~Layer~Meteorol.}}
5 jmc 1.14 @string{climd = {Clim.~Dynamics}}
6 mlosch 1.36 @string{cch = {Clim.\ Change}}
7 jmc 1.49 @string{cup = {Cambridge University Press}}
8     @string{dao = {Dyn.~Atmos.~Oceans}}
9     @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
10     @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
11     @string{dsr = {Deep Sea Res.}}
12     @string{ecmwf = {ECMWF}}
13     @string{eos = {Eos~Trans.\ AGU}}
14     @string{esa = {European Space Agency (ESA)}}
15     @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
16     @string{estec = {European Space Research and Technology Centre (ESTEC)}}
17     @string{gaos = {Global Atmos.~Ocean System}}
18     @string{grl = {Geophys.~Res.~Lett.}}
19     @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
20     @string{ifremer = {IFREMER/CERSAT}}
21     @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
22     @string{jam = {J.~Appl.~Meteor.}}
23     @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
24 heimbach 1.1 @string{jas = {J.~Atmos.~Sci.}}
25     @string{jclim = {J.~Clim.}}
26 jmc 1.25 @string{jcp = {J.~Comput.~Phys.}}
27 heimbach 1.1 @string{jfm = {J.~Fluid Mech.}}
28 jmc 1.49 @string{jgr = {J.~Geophys.~Res.}}
29     @string{ijrs = {Int.~J.~Remote Sensing}}
30 heimbach 1.1 @string{jms = {J.~Mar.~Sys.}}
31 jmc 1.49 @string{jpo = {J.~Phys.~Oceanogr.}}
32     @string{mpi = {MPI f\"ur Meteorologie}}
33     @string{mwr = {Mon.~Wea.~Rev.}}
34 jmc 1.14 @string{om = {Ocean Modelling}}
35 jmc 1.49 @string{ptrsl = {{Phil.~Trans.~R.~Soc.~Lond.}}}
36 heimbach 1.1 @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
37 jmc 1.49 @string{siscicom= {SIAM J.\ Sci.\ Comput.}}
38 heimbach 1.1 @string{tel = {Tellus}}
39    
40     @Article{bis-eta:92,
41     author = {C.H. Bishof and G.F. Corliss and L. Green and
42     A. Griewank and K. Haigler and P. Newman},
43     year = 1992,
44     title = {Automatic differentiation of advanced GFD codes
45     for multidisciplinary design},
46     journal = {Journal on Computing Systems in Engineering},
47     volume = {3},
48     pages = {625--638},
49     }
50 jmc 1.45
51 heimbach 1.1 @incollection{bis:94,
52     author = {C.H. Bishof},
53     year = 1994,
54     title = {Automatic differentiation, tangent linear models
55     and pseudo-adjoints},
56     booktitle = {High Performance Computing in the Geosciences},
57     series = {Series C: Mathematical and Physical Sciences},
58     pages = {59--80},
59     editor = {F.X. {Le Dimet}},
60     publisher = {Kluwer},
61     address = {Dordrecht, NL},
62     }
63 jmc 1.45
64 heimbach 1.1 @techreport{bis-eta:94,
65     author = {C. Bishof and A. Carle and P. Khademi and
66     A. Maurer},
67     year = 1994,
68     title = {The ADIFOR 2.0 system for the automatic
69     differentiation of FORTRAN 77 programs},
70     institution = {Argonne National Laboratory, Mathematics and
71     Computer Science Division},
72     type = {Argonne Preprint},
73     number = {ANL-MCS-P981-1194},
74 jmc 1.45 address = {ANL; 9700 South Cass Ave.;
75 heimbach 1.1 Argonne (ILL), 90439; USA},
76     note = {http://www.mcs.anl.gov/autodiff/},
77     }
78 cnh 1.29
79 jmc 1.46 @ARTICLE{bryan:84,
80     author = {Kirk Bryan},
81     title = {Accelerating the convergence to equilibrium of Ocean-Climate Models},
82     journal = jpo,
83     year = {1984},
84     volume = {14},
85     number = {4},
86     pages = {666-673},
87     }
88    
89 cnh 1.29 @ARTICLE{bugi-hill:06,
90     author = {V. Bugnion and C. Hill},
91     title = {Equilibration mechanisms in an adjoint ocean general
92     circulation model},
93     journal = {Ocean Dynamics},
94     year = {2006},
95     volume = {56},
96     number = {1},
97     pages = {51-61},
98     doi = {10.1007/s10236-005-0052-z},
99     }
100 jmc 1.45
101 heimbach 1.1 @techreport{bis-roh:97,
102     author = {C. Bishof and L. Roh},
103     year = 1997,
104     title = {ADIC: An extensible automatic differentiation tool
105     for ANSI-C},
106     institution = {Argonne National Laboratory, Mathematics and
107     Computer Science Division},
108     type = {Argonne Preprint},
109     number = {ANL-MCS-P626-1196},
110 jmc 1.45 address = {ANL; 9700 South Cass Ave.;
111 heimbach 1.1 Argonne (ILL), 90439; USA},
112     note = {http://www.mcs.anl.gov/autodiff/},
113     }
114 jmc 1.45
115 heimbach 1.1 @Article{cou-tal:87,
116     author = {P. Courtier and O. Talagrand},
117     year = 1987,
118 jmc 1.45 title = {Variational assimilation of meteorological
119 heimbach 1.1 observations with the adjoint vorticity equation.
120     II: Numerical results},
121     journal = qjrms,
122     volume = {113},
123     pages = {1329--1347},
124     }
125 jmc 1.45
126 heimbach 1.1 @Article{cou-tal:90,
127     author = {P. Courtier and O. Talagrand},
128     year = 1990,
129     title = {Variational assimilation of meteorological
130     observations with direct and adjoint shallow-water
131     equations},
132     journal = tel,
133     volume = {42A},
134     pages = {531--549},
135     }
136 jmc 1.45
137 heimbach 1.1 @Article{cou-eta:94,
138     author = {P. Courtier and J.-N. Th{\'e}paut and
139     A. Hollingsworth},
140     year = 1994,
141     title = {A strategy for operational implementation of
142     4-D-VAR using an incremental approach},
143     journal = qjrms,
144     volume = {120},
145     pages = {1367--1387},
146     }
147 cnh 1.29
148 jmc 1.33 @ARTICLE{durr:91,
149     author = {Dale R. Durran},
150     title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
151     to Leapfrog Time Differencing},
152     journal = mwr,
153     year = {1991},
154     volume = {119},
155     pages = {702-720},
156     }
157 jmc 1.45
158 jmc 1.33
159 cnh 1.29 @ARTICLE{dutk-etal:06,
160     author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
161     title = {Controls on ocean productivity and air-sea carbon flux:
162     An adjoint model sensitivity study},
163     journal = grl,
164     year = {2006},
165     volume = {33},
166     pages = {L02603},
167     doi = {10.1029/2005GL024987},
168     }
169 jmc 1.45
170 heimbach 1.1 @Article{err:97,
171     author = {R.M. Errico},
172     year = 1997,
173     title = {What is an adjoint model},
174     journal = bams,
175     volume = {78},
176     pages = {2577--2591},
177     }
178 jmc 1.45
179 heimbach 1.1 @Article{far-moo:92,
180     author = {B.F. Farrell and A.M. Moore},
181     year = {1992},
182     title = {An adjoint method for obtaining the most rapidly
183     growing perturbation to oceanic flows},
184     journal = jpo,
185     volume = {22},
186     pages = {338--349},
187     }
188 jmc 1.45
189 heimbach 1.1 @Article{far-ioa:96a,
190     author = {B.F. Farrell and P. Ioannou},
191     year = {1996a},
192     title = {Generalized stability theory. Part I:
193     Autonomous operators},
194     journal = jas,
195     volume = {53},
196     pages = {2025--2040},
197     }
198 jmc 1.45
199 heimbach 1.1 @Article{far-ioa:96b,
200     author = {B.F. Farrell and P. Ioannou},
201     year = {1996b},
202     title = {Generalized stability theory. Part I:
203     Nonautonomous operators},
204     journal = jas,
205     volume = {53},
206     pages = {2041--2053},
207     }
208 jmc 1.45
209 heimbach 1.1 @techreport{fau-pap:98,
210     author = {C. Faure and Y. Papegay},
211     year = 1998,
212     title = {Odyss{\'e}e User's Guide. Version 1.7},
213     institution = {Institut National de Recherche en Informatique
214     et en Automatique},
215     type = {Rapport Technique},
216     number = {0224},
217     address = {INRIA; 2004, route des Luciolis, B.P. 93;
218     06902 Sophia Antipolis Cedex; France},
219     note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
220     }
221 jmc 1.45
222 heimbach 1.1 @Article{fau:00,
223     author = {C. Faure},
224     year = {2000},
225     title = {Adjoining strategies for multi-layered programs},
226     journal = {Optimisation Methods and Software},
227     note = {in press},
228     }
229 jmc 1.45
230 dfer 1.34 @Article{fer-eta:05,
231     author = {D. Ferreira and J. Marshall and P. Heimbach},
232     year = 2005,
233     title = {Estimating Eddy Stresses by Fitting Dynamics to Observations
234     using a Residual-Mean Ocean Circulation Model and Its Adjoint},
235     journal = jpo,
236     volume = {35},
237     pages = {1891--1910},
238     }
239    
240 jmc 1.39 @Article{gas-eta:90,
241 jmc 1.45 author = {P. Gaspar and Y. Gr\'egoris and J.-M. Lefevre},
242 jmc 1.39 year = 1990,
243 jmc 1.45 title = {A Simple Eddy Kinetic Energy Model for Simulations of the
244     Oceanic Vertical Mixing: Tests at Station Papa and Long-Term
245 jmc 1.39 Upper Ocean Study Site},
246     journal = jgr,
247     volume = {95 (C9)},
248     pages = {16,179--16,193},
249     }
250    
251 heimbach 1.1 @Article{gen-mcw:90,
252 dfer 1.44 author = {P. R. Gent and J. C. McWilliams},
253 heimbach 1.1 year = 1990,
254     title = {Isopycnal mixing in ocean circulation models},
255     journal = jpo,
256     volume = {20},
257     pages = {150--155},
258     }
259 jmc 1.45
260 heimbach 1.1 @Article{gen-eta:95,
261 dfer 1.44 author = {P. R. Gent and J. Willebrand and T. J. McDougall and J. C. McWilliams},
262 heimbach 1.1 year = 1995,
263 dfer 1.44 title = {Parameterizing eddy-induced tracer transports in ocean circulation models},
264 heimbach 1.1 journal = jpo,
265     volume = {25},
266     pages = {463--474},
267     }
268 jmc 1.45
269 heimbach 1.1 @Article{gie-kam:98,
270     author = {R. Giering and T. Kaminski},
271     year = 1998,
272     title = {Recipes for adjoint code construction},
273     journal = {ACM Transactions on Mathematical Software},
274     volume = 24,
275     pages = {437--474},
276     }
277    
278     @techreport{gie:99,
279     author = {R. Giering},
280     year = 1999,
281 jmc 1.45 title = {Tangent linear and Adjoint Model Compiler.
282 heimbach 1.1 Users manual 1.4 (TAMC Version 5.2)},
283     institution = {Massachusetts Institute of Technology},
284     type = {Report},
285     number = {~},
286     address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
287     02139; USA},
288     note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
289     }
290 jmc 1.45
291 heimbach 1.1 @incollection{gie:00,
292     author = {R. Giering},
293     editor = {P. Kasibhatla and M. Heimann and P. Rayner and
294     N. Mahowald and R.G. Prinn and D.E. Hartley},
295     year = 2000,
296     booktitle = {Inverse methods in global biogeochemical cycles},
297     title = {Tangent linear and adjoint biogeochemical models},
298     publisher = {American Geophysical Union},
299     series = {Geophysical Monograph},
300     volume = {114},
301     address = {Washington, DC},
302     pages = {33--48},
303     }
304    
305     @Article{gil-lem:89,
306     author = {J.C. Gilbert and C. Lemar\'echal},
307     year = 1989,
308     title = {Some numerical experiments with variable-storage
309     quasi-Newton algorithms},
310     journal = {Math. Programming},
311     volume = {45},
312     pages = {407--435},
313     }
314 jmc 1.45
315 heimbach 1.1 @book{gil-eta:81,
316     author = {P.E. Gill and W. Murray and M.H. Wright},
317     title = {Practical optimization},
318     year = 1981,
319     publisher = {Academic Press},
320 jmc 1.45 address = {London},
321 heimbach 1.1 pages = {401 pp.},
322     }
323 jmc 1.45
324 heimbach 1.11 @incollection{gri:89,
325     author = {A. Griewank},
326     year = 1989,
327     title = {On automatic differentiation},
328     booktitle = {Mathematical Programming: Recent Developments and
329     Applications},
330     pages = {83--108},
331     editor = {M. Iri and K. Tanabe},
332     publisher = {Kluwer},
333     address = {Dordrecht, NL},
334     }
335 jmc 1.45
336 heimbach 1.11 @Article{gri:92,
337     author = {A.~Griewank},
338     title = {Achieving logarithmic growth of temporal and spatial
339     complexity in reverse {A}utomatic {D}ifferentiation},
340     journal = {Optimization Methods and Software},
341     year = {1992},
342     volume = {1},
343     pages = {35--54}
344     }
345    
346 heimbach 1.1 @book{gri:00,
347     author = {A. Griewank},
348     title = {Evaluating Derivatives. Principles and Techniques
349     of Algorithmic Differentiation},
350     year = 2000,
351     series = {Frontiers in Applied Mathematics},
352     volume = {19},
353     publisher = {SIAM},
354 jmc 1.45 address = {Philadelphia},
355 heimbach 1.1 pages = {369 pp.},
356     }
357 jmc 1.45
358 heimbach 1.1 @Article{hal-eta:82,
359     author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
360     year = 1982,
361     title = {Sensitivity analysis of a radiative-convective
362     model by the adjoint method},
363     journal = jas,
364     volume = {39},
365     pages = {2038--3050},
366     }
367 cnh 1.6
368     @Article{Haney,
369     author = {R.L. Haney},
370     title = {Surface thermal boundary conditions for ocean
371     circulation models},
372     journal = jpo,
373     year = 1971,
374     volume = 1,
375     pages = {241--248}
376     }
377 jmc 1.45
378 cnh 1.16 @Article{held-suar:94,
379     author = {I.M. Held and M.J. Suarez},
380     year = {1994},
381     title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
382     journal = {Bulletin of the American Meteorological Society},
383     volume = {75(10)},
384     pages = {1825-1830}
385     }
386 jmc 1.45
387 heimbach 1.1 @Article{hil-eta:01,
388 jmc 1.45 author = {C. Hill and M. Follows and V. Bugnion and
389 heimbach 1.1 J. Marshall},
390 cnh 1.10 year = {2002},
391 jmc 1.45 title = {Spatial and Temporal Impacts of ocean general
392 heimbach 1.1 circulation on carbon sequestration},
393 cnh 1.6 journal = {Global Biogeochemical Cycles},
394 heimbach 1.1 note = {submitted},
395     }
396 cnh 1.6
397 edhill 1.15 @ARTICLE{hib80,
398 mlosch 1.36 author = {Hibler, III, William D.},
399 edhill 1.15 TITLE = "Modeling a Variable Thickness Sea Ice Cover",
400     JOURNAL = mwr,
401     YEAR = 1980,
402     VOLUME = 1,
403     PAGES = "1943-1973"
404     }
405    
406 cnh 1.6 @Article{Holland75,
407     author = {W.R. Holland and L. B. Lin},
408     year = {1975a},
409 jmc 1.45 title = {On the origin of mesoscale eddies and their contribution
410     to the general circulation of the ocean. I. A preliminary
411 cnh 1.6 numerical experiment},
412     journal = jpo,
413     volume = {5},
414     pages = {642-657}
415     }
416    
417     @Article{hol-lin:75b,
418     author = {W.R. Holland and L. B. Lin},
419     year = {1975b},
420 jmc 1.45 title = {On the origin of mesoscale eddies and their contribution
421 cnh 1.6 to the general circulation of the ocean. II. A parameter
422     study},
423     journal = jpo,
424     volume = {5},
425     pages = {658-669}
426     }
427    
428 jmc 1.31 @Article{jam-oze:86,
429 jmc 1.45 author = {B.M. Jamart and J. Ozer},
430 jmc 1.31 year = {1986},
431 jmc 1.45 title = {Numerical boundary layers and spurious residual flows},
432 jmc 1.31 journal = jgr,
433     volume = {91},
434     pages = {10,621-10,631}
435     }
436    
437 heimbach 1.1 @book{kas-eta:00,
438     author = {P. Kasibhatla and M. Heimann and P. Rayner and
439     N. Mahowald and R.G. Prinn and D.E. Hartley},
440     year = 2000,
441     title = {Inverse methods in global biogeochemical cycles},
442     publisher = {American Geophysical Union},
443     series = {Geophysical Monograph},
444     volume = {114},
445     address = {Washington, DC},
446     pages = {324 pp.},
447     }
448    
449     @Article{lar-eta:94,
450     author = {W.G. Large and J.C. McWilliams and S.C. Doney},
451     year = 1994,
452 dfer 1.44 title = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization},
453 heimbach 1.1 journal = {Rev.~Geophys.},
454     volume = {32},
455     pages = {363--403},
456     }
457 jmc 1.45
458 heimbach 1.1 @Article{lar-eta:97,
459 jmc 1.45 author = {W. G. Large and G. Danabasoglu and S. C. Doney
460     and J. C. McWilliams},
461 heimbach 1.1 year = 1997,
462     title = {Sensitivity to surface forcing and boundary layer
463 jmc 1.45 mixing in a global ocean model: Annual-mean climatology},
464 heimbach 1.1 journal = jpo,
465     volume = {27},
466 jmc 1.45 number = 11,
467 heimbach 1.1 pages = {2418--2447},
468     }
469 jmc 1.45
470 heimbach 1.1 @Article{led-tal:86,
471     author = {F.-X. {Le Dimet} and O. Talagrand},
472     year = 1986,
473     title = {Variational algorithms for analysis and
474     assimilation of meteorological observations:
475     theoretical aspects},
476     journal = tel,
477     volume = {38A},
478     pages = {97--110},
479     }
480 cnh 1.6
481     @TechReport{lev:94a,
482     author = {S. Levitus and T.P.Boyer},
483     title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
484     institution = {NOAA Atlas NESDIS 3},
485     year = 1994,
486     OPTkey = {},
487     OPTtype = {},
488     OPTnumber = {},
489     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
490     OPTmonth = {},
491     OPTnote = {},
492     OPTannote = {}
493     }
494    
495    
496     @TechReport{Levitus94,
497     author = {S. Levitus and T.P.Boyer},
498     title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
499     institution = {NOAA Atlas NESDIS 4},
500     year = 1994,
501     OPTkey = {},
502     OPTtype = {},
503     OPTnumber = {},
504     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
505     OPTmonth = {},
506     OPTnote = {},
507     OPTannote = {}
508     }
509    
510 jmc 1.45
511 heimbach 1.1 @Article{lew-der:85,
512     author = {J. Lewis and J. Derber},
513     year = {1985},
514     title = {The use of adjoint equations to solve a variational
515     adjustment problem with advective constraints},
516     journal = {Tellus},
517     volume = {37A},
518     pages = {309--322},
519     }
520 jmc 1.45
521 heimbach 1.1 @techreport{lon:88,
522     author = {R.B. Long},
523     year = 1988,
524     title = {Notes on assimilating observations into
525     numerical models},
526     institution = {Delft Hydraulics},
527     type = {Report},
528     number = {~},
529     pages = {38 pp.},
530     address = {Delft (NL)},
531     }
532 cnh 1.29
533     @ARTICLE{losc-heim:06,
534 mlosch 1.42 author = {Martin Losch and Patrick Heimbach},
535     title = {Adjoint Sensitivity of an Ocean General Circulation
536     Model to Bottom Topography},
537     journal = jpo,
538     year = 2007,
539     volume = 37,
540     doi = {10.1175/JPO3017.1},
541     number = 2,
542     pages = {377--393},
543 cnh 1.29 url = {http://mitgcm.org/pdfs/Los2006a.pdf},
544     }
545    
546 jmc 1.45
547 heimbach 1.1 @Article{maro-wun:93,
548     author = {J. Marotzke and C. Wunsch},
549     year = 1993,
550     title = {Finding the steady state of a general circulation
551     model through data assimilation:
552     Application to the North Atlantic Ocean},
553     journal = jgr,
554     volume = {98, C11},
555     pages = {20,149--20,167},
556     }
557 jmc 1.45
558 heimbach 1.1 @Article{maro-eta:99,
559 jmc 1.45 author = {J. Marotzke and R. Giering and K.Q. Zhang and
560 heimbach 1.1 D. Stammer and C. Hill and T. Lee},
561     year = 1999,
562     title = {Construction of the adjoint MIT ocean general
563     circulation model and application to Atlantic heat
564     transport variability},
565     journal = jgr,
566     volume = {104, C12},
567     pages = {29,529--29,547},
568     }
569 jmc 1.45
570 heimbach 1.1 @Article{mars-eta:97a,
571     author = {J. Marshall and C. Hill and L. Perelman and
572     A. Adcroft},
573     year = {1997a},
574     title = {Hydrostatic, quasi-hydrostatic and
575     nonhydrostatic ocean modeling},
576     journal = jgr,
577     volume = {102, C3},
578     pages = {5,733--5,752},
579     }
580 jmc 1.45
581 heimbach 1.1 @Article{mars-eta:97b,
582 jmc 1.45 author = {J. Marshall and A. Adcroft and C. Hill and
583 heimbach 1.1 L. Perelman and C. Heisey},
584     year = {1997b},
585     title = {Hydrostatic, quasi-hydrostatic and
586     nonhydrostatic ocean modeling},
587     journal = jgr,
588     volume = {102, C3},
589     pages = {5,753--5,766},
590     }
591 jmc 1.45
592 jmc 1.33 @Article{mars-eta:98,
593 heimbach 1.1 author = {J. Marshall and H. Jones and C. Hill},
594     year = 1998,
595     title = {Efficient ocean modeling using
596     non-hydrostatic algorithms},
597     journal = jms,
598     volume = {18},
599     pages = {115--134},
600 cnh 1.29 url = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
601     doi = {10.1016/S0924-7963\%2898\%2900008-6},
602 heimbach 1.1 }
603 jmc 1.45
604 jmc 1.38 @Article{mol:09,
605     author = {Andrea Molod},
606     year = 2009,
607     title = {Running {GCM} physics and dynamics on different grids:
608     algorithm and tests},
609     journal = tel,
610     volume = {61A},
611     pages = {381--393},
612 heimbach 1.1 }
613 edhill 1.13
614     %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
615     %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
616 jmc 1.45 %% (Available from Unidata or in PostScript form by anonymous FTP from
617     %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
618     %% a hypertext version of the User's Guide available at
619     %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
620     %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
621 edhill 1.13 %% also available.
622 jmc 1.45
623 heimbach 1.32 @incollection{naum-etal:06,
624     Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
625     Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
626     Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
627     Pages = {~},
628     Publisher = {TU Delft},
629     Title = {Adjoint code by source transformation with OpenAD/F},
630     Year = {2006}}
631    
632 jmc 1.38 @Article{orl:76,
633     author = {I. Orlanski},
634     year = 1976,
635     title = {A simple boundary condition for unbounded hyperbolic flows},
636     journal = jcp,
637     volume = {21},
638     pages = {251--269},
639     }
640    
641 jmc 1.39 @Article{pal-rom:97,
642     author = {T. Paluszkiewicz and R.D. Romea},
643     year = 1997,
644     title = {A one-dimensional model for the parameterization
645     of deep convection in the ocean},
646     journal = dao,
647     volume = {26},
648     pages = {95--130},
649     }
650    
651 edhill 1.13 @TechReport{rew:97,
652     author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
653 jmc 1.45 title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
654 edhill 1.13 An Interface for Data Access, Version 3},
655     institution = {Unidata Program Center},
656     type = {Report},
657     address = {Boulder, Colorado},
658     year = 1997,
659     note = {http://www.unidata.ucar.edu/packages/netcdf/},
660     }
661    
662    
663 heimbach 1.1 @Article{res-eta:98,
664     author = {J.M. Restrepo and G.K. Leaf and A. Griewank},
665     year = 1998,
666 cnh 1.5 title = {Circumventing storage limitations in variational
667 heimbach 1.1 data assimilation studies},
668     journal = {SIAM J. Sci. Comput.},
669     volume = {19},
670     pages = {1586--1605},
671     }
672 jmc 1.45
673 heimbach 1.1 @Article{ros-eta:93,
674     author = {N. Rostaing and S. Dalmas and A. Galligo},
675     year = 1993,
676     title = {Automatic differentiation in Odyss{\'e}e},
677     journal = {Tellus},
678     volume = {45A},
679     pages = {558--568},
680     }
681 jmc 1.45
682 heimbach 1.1 @incollection{she-and:89,
683     author = {J. Sheinbaum and D.L.T. Anderson},
684     year = 1989,
685 jmc 1.45 title = {Assimilation of XBT data using a variational
686 heimbach 1.1 technique},
687     booktitle = {Oceanic circulation models:
688     Combining data and dynamics},
689     pages = {257--285},
690     series = {NATO ASI Series},
691     volume = {C 284},
692     editor = {{D.L.T. Anderson and J. Willebrand}},
693     publisher = {Springer-Verlag},
694     address = {Berlin (Germany)},
695     }
696 cnh 1.6
697 heimbach 1.32 @article{utke-etal:08,
698 mlosch 1.48 Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent
699     and M. Strout and P. Heimbach and C. Hill and
700     D. Ozyurt and C. Wunsch},
701     Date-Modified ={2007-11-19 10:15:08 -0500},
702     Journal = {{ACM} Transactions on Mathematical Software},
703     Pages = {~},
704     Title = {OpenAD/F: A modular open source tool for automatic
705     differentiation of Fortran codes},
706     Volume = {34(4)},
707     Year = 2008
708     }
709 heimbach 1.32
710 cnh 1.6 @Article{DaSilva94,
711     author = {A. da Silva and A. C. Young and S. Levitus},
712     year = 1994,
713     title = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
714     journal = {NOAA Atlas NESDIS},
715     volume = {6},
716     publisher = {U.S. Department of Commerce},
717     address = {Washington, D.C. (USA)},
718     note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
719 cnh 1.28 url = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
720 cnh 1.6 }
721 jmc 1.45
722 heimbach 1.32 @techreport{stam-etal:97,
723 heimbach 1.1 author = {D. Stammer and C. Wunsch and R. Giering and
724 cnh 1.6 Q. Zhang and J. Marotzke and J. Marshall and
725 heimbach 1.1 C. Hill},
726     year = 1997,
727 jmc 1.45 title = {The global ocean circulation estimated from
728 heimbach 1.1 TOPEX/POSEIDON altimetry and a general circulation
729     model},
730     institution = {Center for Global Change Science, Massachusetts
731     Institute of Technology},
732     type = {Technical Report},
733     number = {49},
734     pages = {40 pp.},
735     address = {Cambridge (MA), USA},
736     }
737 jmc 1.45
738 mlosch 1.48 @article{stam-etal:02,
739     author = {D. Stammer and C. Wunsch and R. Giering and
740     C. Eckert and P. Heimbach and J. Marotzke and
741     A. Adcroft and C.N. Hill and J. Marshall},
742     title = {The global ocean circulation and transports during
743     1992 -- 1997, estimated from ocean observations and
744     a general circulation model.},
745     journal = jgr,
746     year = {2002a},
747     volume = {107(C9)},
748     pages = {3118},
749     doi = {10.1029/2001JC000888},
750 cnh 1.29 }
751    
752 cnh 1.6
753     @Article{Stommel66,
754     author = {H. Stommel},
755     year = 1948,
756     title = {The western intensification of wind-driven ocean currents},
757     journal = {Trans. Am. Geophys. Union},
758     volume = {29},
759     pages = {206},
760 heimbach 1.1 }
761    
762     @Article{tal-cou:87,
763     author = {O. Talagrand and P. Courtier},
764     year = 1987,
765 jmc 1.45 title = {Variational assimilation of meteorological
766 heimbach 1.1 observations with the adjoint vorticity equation.
767     I: Theory},
768     journal = qjrms,
769     volume = {113},
770     pages = {1311--1328},
771     }
772 jmc 1.45
773 heimbach 1.1 @Article{tal:97,
774     author = {O. Talagrand},
775     year = 1997,
776     title = {Assimilation of observations, an introduction},
777     journal = {J.~Meteor.~Soc.~Japan},
778     volume = {75},
779     pages = {191--209},
780     }
781 jmc 1.45
782 heimbach 1.1 @book{tar:87,
783     author = {A. Tarantola},
784     title = {Inverse Problem Theory: Methods for data fitting
785     and model parameter estimation},
786     year = 1987,
787     publisher = {Elsevier},
788 jmc 1.45 address = {Amsterdam},
789 heimbach 1.1 pages = {629 pp.},
790     }
791 jmc 1.45
792 heimbach 1.1 @techreport{tha:87,
793     author = {W.C. Thacker},
794     year = 1987,
795     title = {Three lectures on fitting numerical models to
796     observations},
797     institution = {GKSS},
798     type = {Report},
799     number = {87/E/65},
800     pages = {64 pp.},
801     address = {Geesthacht (D)},
802     }
803 jmc 1.45
804 heimbach 1.1 @Article{tha-lon:88,
805     author = {W.C. Thacker and R.B. Long},
806     year = 1988,
807     title = {Fitting dynamics to data},
808     journal = jgr,
809     volume = {93, C2},
810     pages = {1,227--1,240},
811     }
812 jmc 1.45
813 heimbach 1.1 @Article{tha:88,
814     author = {W.C. Thacker},
815     year = 1988,
816     title = {Fitting models to inadequate data by enforcing
817     spatial and temporal smoothness},
818     journal = jgr,
819     volume = {93},
820     pages = {10,655--10,665},
821     }
822 jmc 1.45
823 heimbach 1.1 @Article{tha:89,
824     author = {W.C. Thacker},
825     year = 1989,
826     title = {The role of the Hessian matrix in fitting models
827     to measurements},
828     journal = jgr,
829     volume = {94, C5},
830     pages = {6,177--6,196},
831     }
832 jmc 1.45
833 heimbach 1.1 @Article{tha-rag:94,
834     author = {W.C. Thacker and R. Raghunath},
835     year = 1994,
836     title = {The rigid lid's contribution to the ill-conditioning
837     of oceanic inverse problems},
838     journal = jgr,
839     volume = {99, C5},
840     pages = {10,131--10,141},
841     }
842 jmc 1.45
843 heimbach 1.1 @Article{tzi-tha:89,
844     author = {E. Tziperman and W.C. Thacker},
845     year = {1989},
846     title = {An optimal control / adjoint equation approach
847     to studying the ocean general circulation},
848     journal = jpo,
849     volume = {19},
850     pages = {1471--1485},
851     }
852 jmc 1.45
853 heimbach 1.1 @Article{tzi-eta:92a,
854     author = {E. Tziperman and W.C. Thacker and R.B. Long and
855     S. Hwang},
856     year = {1992a},
857     title = {Oceanic data analysis using a general circulation
858     model. I: Simulations},
859     journal = jpo,
860     volume = {22},
861     pages = {1434--1457},
862     }
863 jmc 1.45
864 heimbach 1.1 @Article{tzi-eta:92b,
865     author = {E. Tziperman and W.C. Thacker and R.B. Long and
866     S. Hwang and S.R. Rintoul},
867     year = {1992b},
868     title = {Oceanic data analysis using a general circulation
869     model. I: A North Atlantic model},
870     journal = jpo,
871     volume = {22},
872     pages = {1458--1485},
873     }
874 jmc 1.45
875 heimbach 1.1 @book{wun:96,
876     author = {C. Wunsch},
877     title = {The ocean circulation inverse problem},
878     year = 1996,
879     publisher = cup,
880 jmc 1.45 address = {Cambridge (UK)},
881 heimbach 1.1 pages = {442 pp.},
882     }
883 jmc 1.45
884 heimbach 1.1 @Article{zha-mar:99,
885     author = {K.Q. Zhang and J. Marotzke},
886     year = 1999,
887     title = {The importance of open-boundary estimation for an
888     Indian Ocean GCM-data synthesis},
889     journal = {J.~Marine Res.},
890     volume = {57},
891     pages = {305--334},
892     }
893 adcroft 1.2
894    
895     @InCollection{hill:95,
896     author = {Hill, C. and J. Marshall},
897     title = {Application of a Parallel Navier-Stokes Model to
898     Ocean Circulation in Parallel Computational Fluid
899     Dynamics},
900     booktitle = {Implementations and Results Using Parallel
901     Computers},
902     pages = {545-552},
903     publisher = {Elsevier Science B.V.: New York},
904     year = 1995,
905     editor = {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
906     }
907    
908    
909     @Article{marshall:97a,
910 adcroft 1.4 author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
911 adcroft 1.2 title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
912     modeling},
913 jmc 1.25 journal = jgr,
914 adcroft 1.2 year = 1997,
915     volume = 102,
916     number = {C3},
917 cnh 1.29 pages = {5733-5752},
918     url = {http://mitgcm.org/pdfs/96JC02775.pdf},
919 adcroft 1.2 }
920    
921     @Article{marshall:97b,
922 cnh 1.10 author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
923 adcroft 1.2 title = {A finite-volume, incompressible Navier Stokes model for
924     studies of the ocean on parallel computers},
925 jmc 1.25 journal = jgr,
926 adcroft 1.2 year = 1997,
927     volume = 102,
928     number = {C3},
929 cnh 1.29 pages = {5753-5766},
930     url = {http://mitgcm.org/pdfs/96JC02776.pdf},
931 adcroft 1.2 }
932    
933     @Article{adcroft:97,
934 adcroft 1.4 author = {Adcroft, A.J. and Hill, C.N. and J. Marshall},
935 adcroft 1.2 title = {Representation of topography by shaved cells in a height
936     coordinate ocean model},
937 jmc 1.25 journal = mwr,
938 adcroft 1.2 year = 1997,
939     volume = 125,
940 cnh 1.29 pages = {2293-2315},
941     url = {http://mitgcm.org/pdfs/mwr_1997.pdf},
942     doi = {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
943 adcroft 1.2 }
944    
945 jmc 1.19 @Article{adcroft:04a,
946     author = {Adcroft, A. and J.-M. Campin},
947 jmc 1.14 title = {Re-scaled height coordinates for accurate representation
948     of free-surface flows in ocean circulation models},
949     journal = om,
950     year = 2004,
951 jmc 1.19 volume = 7,
952 cnh 1.28 pages = {269-284},
953     doi = {10.1016/j.ocemod.2003.09.003},
954 jmc 1.19 }
955    
956     @Article{adcroft:04b,
957     author = {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
958     title = {Implementation of an Atmosphere-Ocean General Circulation Model
959     on the Expanded Spherical Cube},
960     journal = mwr,
961     year = 2004,
962     volume = 132,
963 cnh 1.29 pages = {2845-2863},
964     url = {http://mitgcm.org/pdfs/mwr_2004.pdf},
965     doi = {10.1175/MWR2823.1},
966 jmc 1.19 }
967    
968 jmc 1.33 @inproceedings{adcroft:04c,
969 jmc 1.45 author = {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
970 jmc 1.33 and P. Heimbach},
971 jmc 1.35 title = {Overview of the Formulation and Numerics of the {MIT}GCM},
972 jmc 1.33 booktitle = {Proceedings of the ECMWF seminar series on Numerical Methods,
973 jmc 1.45 Recent developments in numerical methods for atmosphere and
974 jmc 1.33 ocean modelling},
975     year = 2004,
976     pages = {139-149},
977     url = {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
978     publisher = ecmwf
979     }
980    
981 jmc 1.19 @Article{marshall:04,
982     author = {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
983     title = {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
984     journal = mwr,
985     year = 2004,
986     volume = 132,
987 cnh 1.29 pages = {2882-2894},
988     url = {http://mitgcm.org/pdfs/a_o_iso.pdf},
989     doi = {10.1175/MWR2835.1},
990 jmc 1.14 }
991    
992 adcroft 1.2 @Article{visbeck:97,
993 dfer 1.44 author = {M. Visbeck and J. Marshall and T. Haine and M. Spall},
994     title = {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models},
995 jmc 1.25 journal = jpo,
996 adcroft 1.2 year = 1997,
997     volume = 27,
998     number = 3,
999     pages = {381-402}
1000     }
1001    
1002     @Article{shaw:98,
1003     author = {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
1004     and Marshall, J.},
1005     title = {A comparison of implicitly parallel multi-threaded and
1006     data-parallel implementations of an ocean model based
1007     on the Navier-Stokes equations},
1008     journal = {J. of Parallel and Distributed Computing},
1009     year = 1998,
1010     volume = 48,
1011     number = 1,
1012     pages = {1-51}
1013     }
1014    
1015     @Article{mjn:99,
1016     author = {Marshall, J., Jamous, D and J. Nilsson},
1017     title = {Reconciling `thermodynamic' and `dynamic' methods of
1018     computation of water-mass transformation rates},
1019     journal = {DSR},
1020     year = 1999,
1021     volume = 46,
1022     pages = {545-572}
1023     }
1024    
1025     @Article{ms:99,
1026     author = {Marshall, J and F. Schott},
1027     title = {Open ocean deep convection: observations, models and theory},
1028     journal = {Rev. Geophys.},
1029     year = 1999,
1030     volume = 37,
1031     number = 1,
1032     pages = {1-64}
1033     }
1034    
1035     @Article{adcroft:99,
1036     author = {Adcroft, A., Hill C. and J. Marshall},
1037     title = {A new treatment of the Coriolis terms in C-grid models
1038     at both high and low resolutions},
1039 jmc 1.25 journal = mwr,
1040 adcroft 1.2 year = 1999,
1041     volume = 127,
1042 cnh 1.29 pages = {1928-1936},
1043     url = {http://mitgcm.org/pdfs/mwr_1999.pdf},
1044     doi = {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
1045 adcroft 1.2 }
1046    
1047     @InProceedings{hill:99,
1048     author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1049     title = {A Strategy for Terascale Climate Modeling},
1050 cnh 1.8 booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1051 cnh 1.9 year = 1999,
1052     pages = {406-425},
1053     publisher = {World Scientific},
1054 adcroft 1.2 }
1055    
1056     @Article{wardle:00,
1057     author = {Wardle R. and Marshall J.},
1058     title = {Representation of eddies in primitive equation models by a PV flux},
1059 jmc 1.25 journal = jpo,
1060 adcroft 1.2 year = 2000,
1061     volume = 30,
1062     number = 10,
1063     pages = {2481-2503}
1064     }
1065    
1066     @Article{ac:02,
1067     author = {Adcroft, A. and J.-M. Campin},
1068     title = {Comparison of finite volume schemes and direct-space-time
1069     methods for ocean circulation models},
1070 jmc 1.14 journal = om,
1071 adcroft 1.2 year = 2002,
1072     note = {in preparation}
1073     }
1074    
1075     @Article{adcroft:02,
1076 jmc 1.25 author = {Adcroft, A., et~al.},
1077 adcroft 1.2 title = {Energy conversion in discrete numerical models},
1078 jmc 1.14 journal = om,
1079 adcroft 1.2 year = 2002,
1080     note = {in preparation}
1081     }
1082    
1083     @InCollection{arakawa:77,
1084     author = {Arakawa, A. and Lamb, V.},
1085     title = {Computational Design of the Basic Dynamical Processes of
1086     the UCLA General Circulation Model},
1087     booktitle = {Methods in Computational Physics},
1088     pages = {174-267},
1089     publisher = {Academic Press},
1090     year = 1977,
1091     volume = 17
1092     }
1093    
1094 jmc 1.24 @Article{miller_white:84,
1095     author = {Miller, M. J. and White, A. A.},
1096     title = {On the non-hydrostatic equations in pressure
1097     and sigma coordiantes},
1098 jmc 1.25 journal = qjrms,
1099 jmc 1.24 year = 1984,
1100     volume = 110,
1101     pages = {515-533}
1102     }
1103    
1104     @Article{white:89,
1105     author = {White, A. A.},
1106     title = {An extended version of a nonhydrostatic, pressure coordiante model},
1107 jmc 1.25 journal = qjrms,
1108 jmc 1.24 year = 1989,
1109     volume = 115,
1110     pages = {1243-1251}
1111     }
1112    
1113 adcroft 1.2 @Article{adcroft:98,
1114     author = {Adcroft, A. and Marshall, D.},
1115 adcroft 1.3 title = {How slippery are piecewise-constant coastlines in numerical
1116     ocean models?},
1117 adcroft 1.2 journal = {Tellus},
1118 adcroft 1.3 year = 1998,
1119     volume = 50,
1120     number = 1,
1121     pages = {95-108}
1122     }
1123    
1124     @PhdThesis{adcroft:95,
1125     author = {Adcroft, A.},
1126     title = {Numerical Algorithms for use in a Dynamical Model of the
1127     Ocean},
1128     school = {Imperial College, London},
1129     year = 1995
1130     }
1131    
1132     @Article{griffies:00,
1133     author = {Griffies, S.,M. and Hallberg, R.,W.},
1134 dfer 1.44 title = {Biharmonic friction with a {Smagorinsky}-like viscosity for
1135 adcroft 1.3 use in large-scale eddy-permitting ocean models},
1136 jmc 1.25 journal = mwr,
1137 adcroft 1.3 year = 2000,
1138     volume = 128,
1139     number = 8,
1140     pages = {2935-2946}
1141     }
1142    
1143     @Article{wajsowicz:93,
1144     author = {Wajsowicz, R.},
1145     title = {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1146     FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1147 jmc 1.25 journal = jcp,
1148 adcroft 1.3 year = 1993,
1149     volume = 105,
1150     number = 2,
1151     pages = {333-338}
1152     }
1153    
1154     @Article{campin:02,
1155 jmc 1.14 author = {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1156 adcroft 1.3 title = {Conservation of properties in a free-surface model},
1157 jmc 1.14 journal = om,
1158     year = 2004,
1159     volume = 6,
1160     pages = {221-244}
1161 adcroft 1.4 }
1162    
1163 dfer 1.44 @Article{Cox87,
1164     author = {M. D. Cox},
1165     title = {An isopycnal diffusion in a z-coordinate ocean model},
1166     journal = {Ocean modelling},
1167     year = 1987,
1168     volume = 74,
1169     pages = {1-5 (Unpublished manuscript)}
1170     }
1171    
1172     @Article{gretal:98,
1173     author = {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski and V. Larichev and J. K. Dukowicz and R. D. Smith},
1174     title = {Isoneutral diffusion in a z-coordinate ocean model},
1175     journal = jpo,
1176     year = 1998,
1177     volume = 28,
1178     pages = {805-830}
1179     }
1180    
1181     @ARTICLE{gr:98,
1182     author = {S. M. Griffies},
1183     title = {The {Gent-McWilliams} Skew Flux},
1184     journal = jpo,
1185     year = 1998,
1186     volume = 28,
1187     pages = {831-841}
1188     }
1189    
1190    
1191     @Article{gkw:91,
1192     author = {R. Gerdes and C. Koberle and J. Willebrand},
1193     title = {The influence of numerical advection schemes on the results of ocean general circulation models},
1194     journal = climd,
1195     year = 1991,
1196     volume = 5,
1197     number = 4,
1198     pages = {211-226},
1199     doi = {10.1007/BF00210006}
1200     }
1201    
1202 adcroft 1.4 @Article{dm:95,
1203 dfer 1.44 author = {G. Danabasoglu and J. C. McWilliams},
1204 adcroft 1.4 title = {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1205 jmc 1.25 journal = jclim,
1206 adcroft 1.4 year = 1995,
1207     volume = 8,
1208     number = 12,
1209     pages = {2967-2987}
1210     }
1211    
1212     @Article{gkw:99,
1213 dfer 1.44 author = {R. Gerdes and C. Koberle and A. Beckmann and P. Herrmann and J. Willebrand},
1214     title = {Mechanisms for spreading of Mediterranean water in coarse-resolution numerical models},
1215 jmc 1.25 journal = jpo,
1216 adcroft 1.4 year = 1999,
1217     volume = 29,
1218     number = 8,
1219     pages = {1682-1700}
1220     }
1221    
1222 jmc 1.17 @incollection{roe:85,
1223     author = {P.L. Roe},
1224     year = 1985,
1225     title = {Some contributions to the modelling of discontinuous flows},
1226     booktitle = {Large-Scale Computations in Fluid Mechanics},
1227     series = {Lectures in Applied Mathematics},
1228     volume = 22,
1229     pages = {163-193},
1230     editor = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1231     publisher = {American Mathematical Society},
1232     address = {Providence, RI},
1233 adcroft 1.2 }
1234    
1235 mlosch 1.12 @Article{trenberth90,
1236     author = {K. M. Trenberth and J. Olson and W. G. Large},
1237     title = {The Mean Annual Cycle in {G}lobal {O}cean Wind
1238     Stress},
1239     journal = jpo,
1240     year = 1990,
1241     volume = 20,
1242     pages = {1742--1760}
1243 jmc 1.14 }
1244    
1245     @Article{molteni:03,
1246 jmc 1.27 author = {F. Molteni},
1247 edhill 1.30 title = {Atmospheric simulations using a {GCM} with simplified physical
1248 jmc 1.45 parametrization, {I}: Model climatology and variability in
1249 jmc 1.14 multidecadal experiments},
1250     journal = climd,
1251     year = 2003,
1252     volume = 20,
1253     pages = {175--191}
1254 mlosch 1.12 }
1255    
1256     @Article{jiang99,
1257 edhill 1.21 author = {S. Jiang and P. H. Stone and P. Malanotte-Rizzoli},
1258 mlosch 1.12 title = {An Assessment of the {G}eophysical {F}luid
1259     {D}ynamics {L}aboratory Ocean Model with Coarse
1260     Resolution: Annual-Mean Climatology},
1261     journal = jgr,
1262     year = 1999,
1263     volume = 104,
1264     number = {C11},
1265     pages = {25,623--25,645}
1266     }
1267    
1268     @Article{szoeke02,
1269     author = {de Szoeke, Roland A. and Roger M. Samelson},
1270     title = {The Duality between the {B}oussinesq and
1271     {N}on-{B}oussinesq Hydrostatic Equations of Motion},
1272     journal = jpo,
1273     year = 2002,
1274     volume = 32,
1275     number = 8,
1276     pages = {2194--2203}
1277     }
1278    
1279     @Article{jackett95,
1280     author = {David R. Jackett and Trevor J. McDougall},
1281     title = {Minimal Adjustment of Hydrographic Profiles to
1282     Achieve Static Stability},
1283     journal = jaot,
1284     year = 1995,
1285     volume = 12,
1286     number = 4,
1287     pages = {381--389}
1288     }
1289    
1290     @Article{mcdougall03,
1291     author = {Trevor J. McDougall and David R. Jackett and Daniel
1292     G. Wright and Rainer Feistel},
1293     title = {Accurate and Computationally Efficient Algorithms
1294     for Potential Temperature and Density of Seawater},
1295     journal = jaot,
1296     year = {2003},
1297     OPTkey = {},
1298     OPTvolume = {},
1299     OPTnumber = {},
1300     OPTpages = {},
1301     OPTmonth = {},
1302     OPTnote = {{\textup{In press}}},
1303     OPTannote = {}
1304     }
1305    
1306     @TechReport{fofonoff83,
1307     author = "Fofonoff, P. and Millard, Jr., R.C.",
1308     title = "Algorithms for Computation of Fundamental Properties
1309     of Seawater",
1310     institution = "Unesco",
1311     year = 1983,
1312     type = "Unesco Technical Papers in Marine Science",
1313     number = 44,
1314     pages = {53 pp.}
1315     }
1316    
1317 edhill 1.15 @ARTICLE{zha98a,
1318 mlosch 1.36 AUTHOR = "J. Zhang and Hibler, III, W. D. and M. Steele
1319 edhill 1.15 and D. A. Rothrock",
1320     TITLE = "Arctic ice-ocean modeling with and without climate restoring",
1321     JOURNAL = jpo,
1322     YEAR = 1998,
1323     VOLUME = 28,
1324     PAGES = "191-217"
1325     }
1326    
1327     @ARTICLE{sem76,
1328     AUTHOR = "Semtner, Jr., Albert J.",
1329     TITLE = "A model for the thermodynamic growth of sea ice in
1330     numerical investigations of climate",
1331     JOURNAL = jpo,
1332     YEAR = 1976,
1333     VOLUME = 6,
1334     PAGES = "379-389"
1335     }
1336    
1337     @ARTICLE{win00,
1338     AUTHOR = "M. Winton",
1339     TITLE = "A reformulated three-layer sea ice model",
1340     JOURNAL = jaot,
1341     YEAR = 2000,
1342     VOLUME = 17,
1343     PAGES = "525-531"
1344     }
1345    
1346 jmc 1.45 @ARTICLE{hib79,
1347 mlosch 1.36 author = {Hibler, III, W. D.},
1348 edhill 1.15 TITLE = "A Dynamic Thermodynamic Sea Ice Model",
1349     JOURNAL = jpo,
1350     YEAR = 1979,
1351     VOLUME = 9,
1352     PAGES = "815-846"
1353     }
1354    
1355     @ARTICLE{fla92,
1356 mlosch 1.36 AUTHOR = "G. M. Flato and Hibler, III, W. D.",
1357 edhill 1.15 TITLE = "Modeling pack ice as a cavitating fluid",
1358     JOURNAL = jpo,
1359     YEAR = 1992,
1360     VOLUME = 22,
1361     PAGES = "626-651"
1362     }
1363    
1364     @ARTICLE{hun97,
1365     AUTHOR = "E. C. Hunke and J. K. Dukowicz",
1366     TITLE = "An elastic-viscous-plastic model for sea ice dynamics",
1367     JOURNAL = jpo,
1368     YEAR = 1997,
1369     VOLUME = 27,
1370 mlosch 1.42 PAGES = "1849--1867"
1371     }
1372    
1373     @Article{hun01,
1374     author = {Elizabeth C. Hunke},
1375     title = {Viscous-Plastic Sea Ice Dynamics with the {EVP}
1376     Model: Linearization Issues},
1377     journal = jcp,
1378     year = 2001,
1379     volume = 170,
1380     pages = {18--38},
1381     doi = {10.1006/jcph.2001.6710}
1382 edhill 1.15 }
1383    
1384     @ARTICLE{zha00,
1385     AUTHOR = "Jinlun Zhang and Drew Rothrock",
1386     TITLE = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
1387     JOURNAL = jgr,
1388     YEAR = 2000,
1389     VOLUME = 105,
1390 mlosch 1.42 PAGES = "3325--3338"
1391 edhill 1.15 }
1392 edhill 1.18
1393     @Article{Shapiro_70,
1394     author = {Shapiro, R.},
1395     title = {Smoothing, filtering, and boundary effects},
1396     journal = {Reviews of Geophysics and Space Physics},
1397     year = {1970},
1398     volume = {8},
1399     number = {2},
1400     pages = {359--387},
1401     }
1402    
1403 edhill 1.20 @TechReport{Dutkiewicz_etal_05,
1404     author = {S. Dutkiewicz and A. Sokolov and J. Scott and P. Stone},
1405 jmc 1.45 title = {A Three-Dimensional Ocean-Seaice-Carbon Cycle Model and
1406     its Coupling to a Two-Dimensional Atmospheric Model: Uses
1407 edhill 1.20 in Climate Change Studies, Report 122},
1408     institution = {MIT Joint Program of the Science and Policy of Global Change},
1409     year = {2005},
1410     OPTnumber = {122},
1411     address = {Cambridge, MA},
1412     note = {http://web.mit.edu/globalchange/www/MITJPSPGC\_Rpt122.pdf},
1413     }
1414    
1415     @Article{Follows_etal_05,
1416     author = {M. Follows and T. Ito and S. Dutkiewicz},
1417     title = {A Compact and Accurate Carbonate Chemistry Solver for Ocean
1418     Biogeochemistry Models},
1419     journal = {Ocean Modeling},
1420     year = {{in press}},
1421     OPTkey = {},
1422     OPTvolume = {},
1423     OPTnumber = {},
1424     OPTpages = {},
1425     }
1426    
1427     @Article{McKinley_etal_04,
1428     author = {G. McKinley and M. J. Follows and J. C. Marshall},
1429 jmc 1.45 title = {Mechanisms of air-sea CO$_2$ flux variability in the
1430 edhill 1.20 Equatorial Pacific and the North Atlantic},
1431     journal = {Global Biogeochemical Cycles},
1432 jmc 1.25 year = {2004},
1433 edhill 1.20 OPTkey = {},
1434     volume = {18},
1435     number = {doi:10.1029/2003GB002179},
1436     OPTpages = {},
1437     }
1438    
1439     @TechReport{Trenberth_etal_89,
1440     author = {K. Trenberth and J. Olson and W. Large},
1441     title = {A global wind stress climatology based on ECMWF analyses},
1442     institution = {NCAR},
1443     year = {1989},
1444     OPTkey = {},
1445     OPTtype = {},
1446     number = {NCAR/TN-338+STR},
1447     address = {Boulder, CO},
1448     OPTmonth = {},
1449     }
1450    
1451     @Article{Wanninkhof_92,
1452     author = {R. Wanninkhof},
1453     title = {Relationship between wind speed and gas exchange over the ocean},
1454     journal = jgr,
1455     year = {1992},
1456     OPTkey = {},
1457     volume = {97},
1458     OPTnumber = {},
1459     pages = {7373--7382},
1460     OPTmonth = {},
1461     }
1462    
1463 molod 1.22 @incollection{black:77,
1464     author = {A. K. Blackadar},
1465     year = {1977},
1466     title = {High Resolution Models of the Planetary Boundary Layer.},
1467     booktitle = {Advances in Environmental Science and Engineering, Vol 1 } ,
1468     editor = {Pfafflin and Zeigler},
1469     publisher = {Gordon and Breach, Scientific Publishers}
1470     }
1471 jmc 1.45
1472 molod 1.22 @Article{chou:92,
1473     author = {M-D. Chou},
1474     year = {1992},
1475     title = {A solar radiation model for use in climate studies.},
1476 jmc 1.45 journal = jas,
1477 molod 1.22 volume = {49},
1478     pages = {762-772}
1479     }
1480    
1481     @Article{chou:90,
1482     author = {M-D. Chou},
1483     year = {1990},
1484     title = {Parameterizations for the absorption of solar radiation
1485     by O$_2$ and CO$_2$ with applications to climate studies.},
1486     journal = jclim,
1487     volume = {3},
1488     pages = {209-217}
1489     }
1490    
1491     @techreport{chsz:94,
1492     author = {M.-D. Chou and M.J.Suarez},
1493     year = {1994},
1494     title = {An efficient thermal infrared radiation parameterization
1495     for use in general circulation models},
1496 jmc 1.45 institution = {National Aeronautics and Space Administration},
1497     type = {NASA Technical Memorandum},
1498     number = {104606-Vol 3},
1499 molod 1.22 address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1500     note = {http://www.gmao.nasa.gov/}
1501     }
1502    
1503     @Article{clarke:70,
1504     author = {R. H. Clarke},
1505     year = {1970},
1506     title = {Observational studies in the atmospheric boundary layer.},
1507 jmc 1.45 journal = qjrms,
1508 molod 1.22 volume = {96},
1509     pages = {91-114}
1510     }
1511    
1512     @Article{deftow:94,
1513     author = { R. S. Defries and J. R. G. Townshend},
1514     year = {1994},
1515     title = {NDVI-derived Land Cover Classification at Global Scales. },
1516     journal = {Int'l J. Rem. Sens.} ,
1517     volume = {15},
1518 jmc 1.45 pages = {3567-3586}
1519 molod 1.22 }
1520    
1521     @Article{dorsell:89,
1522     author = { J. L. Dorman and P. J. Sellers},
1523     year = {1989},
1524 jmc 1.45 title = {A global climatology of albedo, roughness length and stomatal
1525 molod 1.22 resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1526 jmc 1.45 journal = jam,
1527 molod 1.22 volume = {28},
1528     pages = {833-855}
1529     }
1530    
1531     @Article{helflab:88,
1532     author = { H. M. Helfand and J. C. Labraga},
1533     year = {1988},
1534     title = { Design of a non-singular level 2.5 second-order closure
1535     model for the prediction of atmospheric turbulence. },
1536 jmc 1.45 journal = jas,
1537 molod 1.22 volume = {45},
1538     pages = {113-132}
1539     }
1540    
1541     @inproceedings{helfetal:91,
1542     author = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1543     year = {1991},
1544     title = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1545     booktitle = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1546     year = 1991,
1547     pages = {406-425},
1548     publisher = {American Meteorological Society}
1549     }
1550    
1551     @Article{helfschu:95,
1552     author = {H. M. Helfand and S. D. Schubert},
1553     year = {1995},
1554     title = { Climatology of the
1555     Simulated Great Plains Low-Level Jet and Its contribution to the
1556     Continental Moisture Budget of the United States. },
1557     journal = jclim,
1558     volume = {8},
1559     pages = {784-806}
1560     }
1561    
1562     @Article{kondo:75,
1563     author = {J. Kondo},
1564     year = {1975},
1565     title = {Air-sea bulk transfer coefficients in diabatic conditions.},
1566 jmc 1.45 journal = blm,
1567 molod 1.22 volume = {9},
1568     pages = {91-112}
1569     }
1570    
1571     @techreport{ks:91,
1572     author = { Randal D. Koster and Max J. Suarez},
1573     year = {1991},
1574     title = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1575 jmc 1.45 institution = {National Aeronautics and Space Administration},
1576     type = {NASA Technical Memorandum},
1577     number = {104538},
1578 molod 1.22 address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1579     note = {http://www.gmao.nasa.gov/},
1580     }
1581    
1582     @Article{ks:92,
1583     author = { Randal D. Koster and Max J. Suarez},
1584     year = {1992},
1585     title = { Modeling the Land Surface Boundary
1586     in Climate Models as a Composite of Independent Vegetation Stands.},
1587     journal = jgr,
1588     volume = {97},
1589     pages = {2697-2715}
1590     }
1591    
1592     @Article{lhans:74,
1593     author = {A. A. Lacis and J. E. Hansen},
1594     year = {1974},
1595     title = { A parameterization for the absorption of solar radiation
1596     in the Earth's atmosphere. },
1597 jmc 1.45 journal = jas,
1598 molod 1.22 volume = {31},
1599     pages = {118-133}
1600     }
1601    
1602     @Article{larpond:81,
1603     author = {W. G. Large and S. Pond},
1604     year = {1981},
1605     title = {Open ocean momentum flux measurements in moderate to strong winds.},
1606 jmc 1.45 journal = jpo,
1607 molod 1.22 volume = {11},
1608     pages = {324-336}
1609     }
1610    
1611     @Article{moorsz:92,
1612     author = {S. Moorthi and M. J. Suarez},
1613     year = {1992},
1614     title = { Relaxed Arakawa Schubert: A parameterization of moist
1615     convection for general circulation models.},
1616 jmc 1.45 journal = mwr,
1617 molod 1.22 volume = {120},
1618     pages = {978-1002}
1619     }
1620    
1621     @incollection{pano:73,
1622     author = {H. A. Panofsky},
1623     year = {1973},
1624     title = {Tower Micrometeorology. },
1625     booktitle = {Workshop on Micrometeorology},
1626     editor = {D. A. Haugen},
1627     publisher = {American Meteorological Society}
1628     }
1629    
1630     @Article{reynetal:94,
1631     author = {R. W. Reynolds and T. M. Smith},
1632     year = {1994},
1633     title = {Improved global sea surface temperature analyses using optimum interpolation.},
1634 jmc 1.45 journal = jclim,
1635 molod 1.22 volume = {7},
1636     pages = {929-948}
1637     }
1638    
1639     @Article{rosen:87,
1640     author = {J. E. Rosenfield and M. R. Schoeberl and M. A. Geller},
1641     year = {1987},
1642     title = { A computation of the stratospheric
1643     diabatic circulation using an accurate radiative transfer model},
1644 jmc 1.45 journal = jas,
1645 molod 1.22 volume = {44},
1646     pages = {859-876}
1647     }
1648    
1649     @Article{sudm:88,
1650     author = {Y. C. Sud and A. Molod},
1651     year = {1988},
1652     title = { The roles of dry convection, cloud-radiation feedback processes
1653     and the influence of recent improvements in the parameterization of convection in the GLA GCM. },
1654 jmc 1.45 journal = mwr,
1655 molod 1.22 volume = {116},
1656     pages = {2366-2387}
1657     }
1658    
1659     @techreport{taksz:96,
1660     author = {L. L. Takacs and M.J. Suarez},
1661     year = {1996},
1662     title = { Dynamical aspects of climate simulations Using the GEOS
1663     General Circulation Model},
1664 jmc 1.45 institution = {National Aeronautics and Space Administration},
1665     type = {NASA Technical Memorandum},
1666     number = {104606 Volume 10},
1667 molod 1.22 address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1668     note = {http://www.gmao.nasa.gov/},
1669     }
1670    
1671     @Article{yagkad:74,
1672     author = {A. M. Yaglom and B. A. Kader},
1673     year = {1974},
1674     title = {Heat and mass transfer between a rough wall and
1675     turbulent fluid flow at high Reynolds and Peclet numbers. },
1676 jmc 1.45 journal = jfm,
1677 molod 1.22 volume = {62},
1678     pages = {601-623}
1679     }
1680    
1681     @Article{yam:77,
1682     author = {T. Yamada},
1683     year = {1977},
1684     title = { A numerical experiment on pollutant dispersion in a horizontally-homogenious
1685     atmospheric boundary layer.},
1686 jmc 1.45 journal = {Atmos. Environ.},
1687 molod 1.22 volume = {11},
1688     pages = {1015-1024}
1689     }
1690    
1691     @Article{zhouetal:95,
1692     author = {J. Zhou and Y.C. Sud and K.-M. Lau},
1693     year = {1995},
1694     title = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1695 jmc 1.45 journal = qjrms,
1696 molod 1.22 volume = {122},
1697     pages = {903-927}
1698     }
1699 molod 1.23
1700     @Article{breth:99,
1701 jmc 1.45 author = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1702     and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1703     and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1704     B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1705 molod 1.23 year = 1999,
1706 jmc 1.45 title = {An intercomparison of radiatively driven entrainment and turbulence
1707     in a smoke cloud, as simulated by different numerical models.},
1708 molod 1.23 journal = qjrms,
1709 jmc 1.45 volume = {125},
1710 molod 1.23 pages = {391-423}
1711     }
1712    
1713     @Article{bm:99,
1714 jmc 1.45 author = {A. C. Bushell and G.M. Martin},
1715 molod 1.23 year = 1999,
1716 jmc 1.45 title = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1717     journal = {Climate Dyn.},
1718     volume = {15},
1719 molod 1.23 pages = {293-318}
1720     }
1721    
1722     @Article{Inn:01,
1723 jmc 1.45 author = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1724 molod 1.23 year = 2001,
1725     title = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1726     Implications for the Simulation of the Madden-Julian Oscillation.},
1727 jmc 1.45 journal = {Climate Dyn.},
1728     volume = {17},
1729 molod 1.23 pages = {777-794}
1730     }
1731    
1732     @Article{kal:89,
1733 jmc 1.45 author = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1734     J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1735 molod 1.23 year = 1989,
1736 jmc 1.45 title = {Rules for Interchange of Physical Parameterizations.},
1737     journal = bams,
1738     volume = {70},
1739 molod 1.23 pages = {620-622}
1740     }
1741    
1742     @Article{wo:98,
1743 jmc 1.45 author = {D. Williamson and J.G. Olsen},
1744 molod 1.23 year = 1998,
1745     title = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1746 jmc 1.45 journal = mwr,
1747     volume = {126},
1748 molod 1.23 pages = {991-1000}
1749     }
1750 jmc 1.40
1751 edhill 1.26 @TechReport{MPI-std-20,
1752 jmc 1.40 author = {{Message Passing Interface Forum}},
1753 edhill 1.26 title = {{MPI}: A Message-Passing Interface standard (version 2.0)},
1754     institution = {mpi-forum.org},
1755     year = {1998},
1756     }
1757    
1758 mlosch 1.36 @Article{cam08,
1759     author = {Jean-Michel Campin and John Marshall and David
1760     Ferreira},
1761     title = {Sea-Ice Ocean Coupling Using a Rescaled Vertical
1762     Coordinate z$^\ast$},
1763     journal = om,
1764     volume = 24,
1765     number = {1--2},
1766     pages = {1--14},
1767     doi = {10.1016/j.ocemod.2008.05.005},
1768     year = 2008
1769     }
1770    
1771     @Article{geiger98,
1772     author = {Cathleen A. Geiger and Hibler, III, William D. and
1773     Stephen F. Ackley},
1774     title = {Large-Scale Sea Ice Drift and Deformation:
1775     {C}omparison between Models and Observations in the
1776     Western {W}eddell {S}ea during 1992},
1777     journal = jgr,
1778     year = 1998,
1779     volume = 103,
1780     number = {C10},
1781     pages = {21893--21913}
1782     }
1783    
1784     @InCollection{hibler84,
1785     author = {Hibler, III, William D.},
1786     title = {The role of sea ice dynamics in modeling CO{$_2$}
1787     increases},
1788     booktitle = {Climate processes and climate sensitivity},
1789     pages = {238--253},
1790     publisher = {AGU},
1791     year = 1984,
1792     editor = {J. E. Hansen and T. Takahashi},
1793     volume = 29,
1794     series = {Geophysical Monograph},
1795     address = {Washington, D.C.}
1796     }
1797    
1798     @Article{hibler87,
1799     author = {Hibler, III, William D. and Kirk Bryan},
1800     title = {A Diagnostic Ice-Ocean Model},
1801     journal = jpo,
1802     year = 1987,
1803     volume = 17,
1804     number = 7,
1805     pages = {987--1015}
1806     }
1807    
1808     @InCollection{hibler95,
1809     author = {Hibler, III, William D. and Chi F. Ip},
1810     title = {The effect of sea ice rheology on {A}rcitc buoy
1811     drift},
1812     booktitle = {Ice Mechanics},
1813     pages = {255--264},
1814     publisher = {Am. Soc. of Mech. Eng.},
1815     year = 1995,
1816     editor = {John P. Dempsey and Y. D. S. Rajapakse},
1817     volume = 204,
1818     series = {AMD},
1819     address = {New York}
1820     }
1821    
1822     @Article{hibler97,
1823     author = {Hibler, III, William D. and Erland M. Schulson},
1824     title = {On Modeling Sea-Ice Fracture and Flow in Numerical
1825     Investigations of Climate},
1826     journal = angl,
1827     year = 1997,
1828     volume = 25,
1829     pages = {26--32}
1830     }
1831    
1832     @Article{hundsdorfer94,
1833     author = {Willem Hundsdorfer and R. A. Trompert},
1834     title = {Method of Lines and Direct Discretization: a
1835     Comparison for Linear Advection},
1836     journal = {Applied Numerical Mathematics},
1837     year = 1994,
1838     volume = 13,
1839     number = 6,
1840     pages = {469--490},
1841     doi = {10.1016/0168-9274(94)90009-4}
1842     }
1843    
1844     @Article{leppaeranta83,
1845     author = {Matti Lepp{\"a}ranta},
1846     title = {A Growth Model for Black Ice, Snow Ican and Snow
1847     Thickness in Subarctic Basins},
1848     journal = {Nordic Hydrology},
1849     year = 1983,
1850     volume = 14,
1851     pages = {59--70}
1852     }
1853    
1854     @Article{manabe79,
1855     author = {S. Manabe and Kirk Bryan and M. J. Spelman},
1856     title = {A Global Ocean-Atmosphere Climate Model with Seasonal
1857     Variation for Future Studies of Climate Sensitivity},
1858     journal = dao,
1859     year = 1979,
1860     volume = 3,
1861     number = {393--426}
1862     }
1863    
1864 mlosch 1.48 @Article{menemenlis05,
1865 mlosch 1.36 author = {D. Menemenlis and C. Hill and A. Adcroft and
1866     J.-M. Campin and B. Cheng and B. Ciotti and
1867     I. Fukumori and A. Koehl and P. Heimbach and
1868     C. Henze and T. Lee and D. Stammer and J. Taft and
1869     J. Zhang},
1870     title = {{NASA} Supercomputer Improves Prospects for Ocean
1871     Climate Research},
1872     journal = eos,
1873     year = 2005,
1874     volume = 86,
1875     number = 9,
1876     pages = {89, 95--96}
1877     }
1878    
1879     @Article{parkinson79,
1880     author = {{Parkinson}, Claire~L. and {Washington}, Warren~M.},
1881     title = "{A Large-Scale Numerical Model of Sea Ice}",
1882     journal = jgr,
1883     year = 1979,
1884     month = jan,
1885     volume = 84,
1886     number = {C1},
1887     pages = {311--337},
1888     adsurl = {http://adsabs.harvard.edu/cgi-bin/nph-bib_query?bibcode=1979JGR....84..311P&db_key=PHY},
1889     adsnote = {Provided by the Smithsonian/NASA Astrophysics Data
1890     System}
1891     }
1892    
1893     @Article{semtner84,
1894     author = {Semtner, Jr., Albert J.},
1895     title = {On Modelling the Seasonal Thermodynamic Cycle of Sea
1896     Ice in Studies of Climatic Change},
1897     journal = cch,
1898     year = 1984,
1899     volume = 6,
1900     number = 1,
1901     pages = {27--37}
1902     }
1903    
1904     @Article{zhang97,
1905     author = {Jinlun Zhang and Hibler, III, William D.},
1906     title = {On an Efficient Numerical Method for Modeling Sea Ice Dynamics},
1907     journal = jgr,
1908     year = 1997,
1909     volume = 102,
1910     number = {C4},
1911     pages = {8691--8702}
1912     }
1913    
1914     @Article{zhang03,
1915     author = {Jinlun Zhang and Drew A. Rothrock},
1916     title = {Modeling Global Sea Ice with a Thickness and
1917     Enthalpy Distribution Model in Generalized
1918     Curvilinear Coordinates},
1919     journal = mwr,
1920     year = 2003,
1921     volume = 131,
1922     number = 5,
1923     pages = {845--861}
1924     }
1925    
1926 mlosch 1.37 @Article{beckmann99,
1927     author = {Aike Beckmann and Hartmut H. Hellmer and Ralph
1928     Timmermann},
1929     title = {A Numerical Model of the {W}eddell {S}ea:
1930     Large-Scale Circulation and Water Mass Distribution},
1931     journal = jgr,
1932     year = 1999,
1933     volume = 104,
1934     number = {C10},
1935     pages = {23,375--23,392}
1936     }
1937    
1938     @Article{grosfeld97,
1939     author = {Klaus Grosfeld and R{\"u}diger Gerdes and J{\"u}rgen
1940     Determann},
1941     title = {Thermohaline Circulation and Interaction between Ice
1942     Shelf Cavities and the Adjacent Open Water},
1943     journal = jgr,
1944     year = 1997,
1945     volume = 102,
1946     number = {C7},
1947     pages = {15,595--15,610}
1948     }
1949    
1950     @Article{hellmer89,
1951     author = {Hartmut H. Hellmer and Dirk J. Olbers},
1952     title = {A Two-Dimensional Model of the Thermohaline
1953     Circulation Under an Ice Shelf},
1954     journal = {Antarct. Sci.},
1955     year = 1989,
1956     volume = 1,
1957     pages = {325--336}
1958     }
1959    
1960     @Article{holland99,
1961     author = {David M. Holland and Adrian Jenkins},
1962     title = {Modeling Thermodynamic Ice-Ocean Interactions at the
1963     Base of an Ice Shelf},
1964     journal = jpo,
1965     year = 1999,
1966     volume = 29,
1967     number = 8,
1968     pages = {1787--1800}
1969     }
1970    
1971     @Article{jenkins01,
1972     author = {Adrian Jenkins and Hartmut H. Hellmer and David
1973     M. Holland},
1974     title = {The Role of Meltwater Advection in the Formulation
1975     of Conservative Boundary Conditions at an Ice-Ocean
1976     Interface},
1977     journal = jpo,
1978     year = 2001,
1979     volume = 31,
1980     pages = {285--296}}
1981    
1982 jmc 1.49 @Article{kalnay96,
1983     author = {E. Kalnay and M. Kanamitsu and R. Kistler and
1984     W. Collins and D. Deaven and L. Gandin and
1985     M. Iredell and S. Saha and G. White and J. Woollen
1986     and Y. Zhu and M. Chelliah and W. Ebisuzaki and
1987     W. Higgins and J. Janowiak and K. C. Mo and
1988     C. Ropelewski and J. Wang and A. Leetmaa and
1989     R. Reynolds and R. Jenne and D. Joseph},
1990     title = {The {NMC/NCAR} 40-Year Reanalysis Project},
1991     journal = bams,
1992     year = 1996,
1993     volume = 77,
1994     pages = {437--471}
1995     }
1996    
1997     @Article{klymaklegg10,
1998     author = {Klymak, Jody M. and Sonya M. Legg},
1999     title = {A simple mixing scheme for models that resolve
2000     breaking internal waves},
2001     journal = om,
2002     year = 2010,
2003     volume = 33,
2004     pages = {224--234},
2005     doi = {10.1016/j.ocemod.2010.02.005}
2006     }
2007    
2008 mlosch 1.37 @Article{losch08,
2009     author = {Martin Losch},
2010     title = {Modeling Ice Shelf Cavities in a z-Coordinate Ocean
2011     General Circulation Model},
2012     journal = jgr,
2013     year = 2008,
2014     volume = 113,
2015     number = {C08043},
2016     doi = {10.1029/2007JC004368}
2017     }
2018    
2019 mlosch 1.48 @Article{losch10:_mitsim,
2020     author = {Losch, Martin and Menemenlis, Dimitris and Campin,
2021     Jean-Michel and Heimbach, Patrick and Hill, Chris},
2022     title = {On the formulation of sea-ice models. {P}art 1:
2023     Effects of different solver implementations and
2024     parameterizations},
2025     journal = om,
2026     year = 2010,
2027     volume = 33,
2028     number = {1--2},
2029     pages = {129--144},
2030     doi = {10.1016/j.ocemod.2009.12.008}
2031     }
2032    
2033 mlosch 1.47 @Article{losch14:_jfnk,
2034     author = {Martin Losch and Annika Fuchs and
2035     Jean-Fran{\c{c}}ois Lemieux and Anna Vanselow},
2036     title = {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver
2037     for a Coupled Sea Ice-Ocean Model },
2038     journal = jcp,
2039     volume = {257},
2040     number = {A},
2041     pages = {901--910},
2042     year = {2014},
2043     doi = {10.1016/j.jcp.2013.09.026}
2044     }
2045    
2046     @Article{lemieux09,
2047     author = {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay},
2048     title = {Numerical Convergence of Viscous-Plastic Sea Ice
2049     Models},
2050     journal = jgr,
2051     year = 2009,
2052     volume = 114,
2053     number = {C05009},
2054     doi = {10.1029/2008JC005017}}
2055    
2056     @Article{lemieux10,
2057     author = {Jean-Fran{\c{c}}ois Lemieux and Bruno Tremblay and Jan
2058     Sedl{\'a}{\v{c}}ek and Paul Tupper and Stephen
2059     Thomas and David Huard and Jean-Pierre Auclair},
2060     title = {Improving the Numerical Convergence of
2061     Viscous-Plastic Sea Ice Models with the
2062     {J}acobian-Free {N}ewton-{K}rylov Method},
2063     journal = jcp,
2064     year = 2010,
2065     volume = 229,
2066     pages = {2840--2852},
2067     doi = {10.1016/j.jcp.2009.12.011c}}
2068    
2069     @article{knoll04:_jfnk,
2070     Author = {D.A. Knoll and D.E. Keyes},
2071     Title = {{J}acobian-free {N}ewton-{K}rylov Methods: a Survey
2072     of Approaches and Applications},
2073     Journal = jcp,
2074     Year = 2004,
2075     Volume = 193,
2076     Pages = {357--397},
2077     doi = {10.1016/j.jcp.2003.08.010},
2078     }
2079    
2080     @Article{saad93:_fgmres,
2081     author = {Y. Saad},
2082     title = {A Flexible Inner-Outer Preconditioned {GMRES}
2083     Method},
2084     journal = siscicom,
2085     year = 1993,
2086     volume = 14,
2087     number = 2,
2088     pages = {461--469}}
2089    
2090 jmc 1.40 @Article{Dutay02,
2091     author = {Dutay, J.-C. and J.L. Bullister and S.C. Doney and J.C. Orr
2092     and R. Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
2093     and Y. Gao and N. Gruber and M.W. Hecht and A. Ishida and F. Joos and K. Lindsay
2094     and G. Madec and E. Maier-Reimer and J.C. Marshall and R.J. Matear and P. Monfray
2095     and A. Mouchet and G.-K. Plattner and J. sarmiento and R. Schlitzer and R. Slater
2096     and I.J. Totterdell and M.-F. Weirig and Y. Yammanaka and A. Yool},
2097     year = 2002,
2098     title = {Evaluation of ocean model ventilation with CFC-11:
2099     comparison of 13 global ocean models},
2100     journal = om,
2101     volume = {4}, number= {}, month = {},
2102     pages = {89-120}
2103     }
2104    
2105     @Article{marsh06,
2106 jmc 1.45 author = {Marshall, John and Emily Shuckburgh and Helen Jones and Chris Hill},
2107 jmc 1.40 year = 2006,
2108 jmc 1.45 title = {Estimates and Implications of Surface Eddy Diffusivity
2109 jmc 1.40 in the Southern Ocean Derived from Tracer Transport},
2110     journal = jpo,
2111     volume = {36}, number= {}, month = {},
2112     pages = {1806-1821}
2113     }
2114    
2115     @InProceedings{hoe-hill:99,
2116     author = {Hoe, James C. and Chris Hill and Alistair Adcroft},
2117     title = {A Personal Supercomputer for Climate Research},
2118     booktitle = {In Proceedings of the ACM/IEEE Super-Computing Confrence},
2119     year = 1999,
2120     pages = {10.1109/SC.1999},
2121     publisher = {IEEE},
2122     }
2123    
2124 mlosch 1.41 @Article{stevens:90,
2125     author = {Stevens, D. P.},
2126     title = {On Open Boundary Conditions for Three Dimensional
2127     Primitive Equation Ocean Circulation Models},
2128     journal = {Geophys. Astrophys. Fl. Dyn.},
2129     year = 1990,
2130     volume = 51,
2131 jmc 1.49 pages = {103--133}
2132     }
2133 mlosch 1.41
2134 jmc 1.49
2135     @Article{moum96,
2136     author = {Moum, J.N.},
2137     title = {Energy-containing scales of turbulence in the ocean thermocline},
2138     journal = jgr,
2139     year = 1996,
2140     volume = {101 (C3)},
2141     pages = {14095--14109}
2142     }
2143    
2144 jmc 1.50 @Article{seimgregg94,
2145     author = {Seim, Harvey E. and Michael C. Gregg},
2146     title = {Detailed observations of a naturally occurring shear instability},
2147     journal = jgr,
2148     year = 1994,
2149     volume = {99 (C5)},
2150     pages = {10049--10073},
2151     }
2152    
2153 jmc 1.49 @Article{thorpe77,
2154     author = {Thorpe, S.A.},
2155     title = {Turbulence and mixing in a Scottish loch},
2156     journal = ptrsl,
2157     year = 1977,
2158     volume = {286},
2159     pages = {125--181}
2160     }
2161    
2162     @Article{wesson94,
2163 jmc 1.50 author = {Wesson, J. C. and Michael C. Gregg},
2164 jmc 1.49 title = {Mixing at Camarinal Sill in the Strait of Gibraltar},
2165     journal = jgr,
2166     year = 1994,
2167     volume = {99 (C5)},
2168     pages = { 9847--9878}
2169 mlosch 1.43 }

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