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1 mlosch 1.36 @string{angl = {Ann.\ Glaciol.}}
2 heimbach 1.1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
3     @string{bams = {Bull.~Am.~Met.~Soc.}}
4     @string{blm = {Bound.~Layer~Meteorol.}}
5 jmc 1.14 @string{climd = {Clim.~Dynamics}}
6 mlosch 1.36 @string{cch = {Clim.\ Change}}
7 heimbach 1.1 @string{jgr = {J.~Geophys.~Res.}}
8     @string{ijrs = {Int.~J.~Remote Sensing}}
9     @string{jas = {J.~Atmos.~Sci.}}
10 jmc 1.25 @string{jam = {J.~Appl.~Meteor.}}
11 heimbach 1.1 @string{jpo = {J.~Phys.~Oceanogr.}}
12     @string{jclim = {J.~Clim.}}
13 jmc 1.25 @string{jcp = {J.~Comput.~Phys.}}
14 heimbach 1.1 @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
15     @string{jfm = {J.~Fluid Mech.}}
16     @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
17     @string{jms = {J.~Mar.~Sys.}}
18 jmc 1.14 @string{om = {Ocean Modelling}}
19 heimbach 1.1 @string{gaos = {Global Atmos.~Ocean System}}
20     @string{grl = {Geophys.~Res.~Lett.}}
21     @string{dsr = {Deep Sea Res.}}
22     @string{dao = {Dyn.~Atmos.~Oceans}}
23     @string{mwr = {Mon.~Wea.~Rev.}}
24     @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
25     @string{tel = {Tellus}}
26     @string{cup = {Cambridge University Press}}
27     @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
28     @string{ifremer = {IFREMER/CERSAT}}
29     @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
30     @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
31     @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
32     @string{mpi = {MPI f\"ur Meteorologie}}
33     @string{ecmwf = {ECMWF}}
34     @string{estec = {European Space Research and Technology Centre
35     (ESTEC)}}
36     @string{esa = {European Space Agency (ESA)}}
37 mlosch 1.36 @string{eos = {Eos~Trans.\ AGU}}
38 heimbach 1.1
39     @Article{bis-eta:92,
40     author = {C.H. Bishof and G.F. Corliss and L. Green and
41     A. Griewank and K. Haigler and P. Newman},
42     year = 1992,
43     title = {Automatic differentiation of advanced GFD codes
44     for multidisciplinary design},
45     journal = {Journal on Computing Systems in Engineering},
46     volume = {3},
47     pages = {625--638},
48     }
49    
50     @incollection{bis:94,
51     author = {C.H. Bishof},
52     year = 1994,
53     title = {Automatic differentiation, tangent linear models
54     and pseudo-adjoints},
55     booktitle = {High Performance Computing in the Geosciences},
56     series = {Series C: Mathematical and Physical Sciences},
57     pages = {59--80},
58     editor = {F.X. {Le Dimet}},
59     publisher = {Kluwer},
60     address = {Dordrecht, NL},
61     }
62    
63     @techreport{bis-eta:94,
64     author = {C. Bishof and A. Carle and P. Khademi and
65     A. Maurer},
66     year = 1994,
67     title = {The ADIFOR 2.0 system for the automatic
68     differentiation of FORTRAN 77 programs},
69     institution = {Argonne National Laboratory, Mathematics and
70     Computer Science Division},
71     type = {Argonne Preprint},
72     number = {ANL-MCS-P981-1194},
73     address = {ANL; 9700 South Cass Ave.;
74     Argonne (ILL), 90439; USA},
75     note = {http://www.mcs.anl.gov/autodiff/},
76     }
77 cnh 1.29
78     @ARTICLE{bugi-hill:06,
79     author = {V. Bugnion and C. Hill},
80     title = {Equilibration mechanisms in an adjoint ocean general
81     circulation model},
82     journal = {Ocean Dynamics},
83     year = {2006},
84     volume = {56},
85     number = {1},
86     pages = {51-61},
87     doi = {10.1007/s10236-005-0052-z},
88     }
89 heimbach 1.1
90     @techreport{bis-roh:97,
91     author = {C. Bishof and L. Roh},
92     year = 1997,
93     title = {ADIC: An extensible automatic differentiation tool
94     for ANSI-C},
95     institution = {Argonne National Laboratory, Mathematics and
96     Computer Science Division},
97     type = {Argonne Preprint},
98     number = {ANL-MCS-P626-1196},
99     address = {ANL; 9700 South Cass Ave.;
100     Argonne (ILL), 90439; USA},
101     note = {http://www.mcs.anl.gov/autodiff/},
102     }
103    
104     @Article{cou-tal:87,
105     author = {P. Courtier and O. Talagrand},
106     year = 1987,
107     title = {Variational assimilation of meteorological
108     observations with the adjoint vorticity equation.
109     II: Numerical results},
110     journal = qjrms,
111     volume = {113},
112     pages = {1329--1347},
113     }
114    
115     @Article{cou-tal:90,
116     author = {P. Courtier and O. Talagrand},
117     year = 1990,
118     title = {Variational assimilation of meteorological
119     observations with direct and adjoint shallow-water
120     equations},
121     journal = tel,
122     volume = {42A},
123     pages = {531--549},
124     }
125    
126     @Article{cou-eta:94,
127     author = {P. Courtier and J.-N. Th{\'e}paut and
128     A. Hollingsworth},
129     year = 1994,
130     title = {A strategy for operational implementation of
131     4-D-VAR using an incremental approach},
132     journal = qjrms,
133     volume = {120},
134     pages = {1367--1387},
135     }
136 cnh 1.29
137 jmc 1.33 @ARTICLE{durr:91,
138     author = {Dale R. Durran},
139     title = {The Third-Order Adams-Bashforth Method: An Attractive Alternative
140     to Leapfrog Time Differencing},
141     journal = mwr,
142     year = {1991},
143     volume = {119},
144     pages = {702-720},
145     }
146    
147    
148 cnh 1.29 @ARTICLE{dutk-etal:06,
149     author = {S. Dutkiewicz and M.J. Follows and P. Heimbach and J. Marshall},
150     title = {Controls on ocean productivity and air-sea carbon flux:
151     An adjoint model sensitivity study},
152     journal = grl,
153     year = {2006},
154     volume = {33},
155     pages = {L02603},
156     doi = {10.1029/2005GL024987},
157     }
158 heimbach 1.1
159     @Article{err:97,
160     author = {R.M. Errico},
161     year = 1997,
162     title = {What is an adjoint model},
163     journal = bams,
164     volume = {78},
165     pages = {2577--2591},
166     }
167    
168     @Article{far-moo:92,
169     author = {B.F. Farrell and A.M. Moore},
170     year = {1992},
171     title = {An adjoint method for obtaining the most rapidly
172     growing perturbation to oceanic flows},
173     journal = jpo,
174     volume = {22},
175     pages = {338--349},
176     }
177    
178     @Article{far-ioa:96a,
179     author = {B.F. Farrell and P. Ioannou},
180     year = {1996a},
181     title = {Generalized stability theory. Part I:
182     Autonomous operators},
183     journal = jas,
184     volume = {53},
185     pages = {2025--2040},
186     }
187    
188     @Article{far-ioa:96b,
189     author = {B.F. Farrell and P. Ioannou},
190     year = {1996b},
191     title = {Generalized stability theory. Part I:
192     Nonautonomous operators},
193     journal = jas,
194     volume = {53},
195     pages = {2041--2053},
196     }
197    
198     @techreport{fau-pap:98,
199     author = {C. Faure and Y. Papegay},
200     year = 1998,
201     title = {Odyss{\'e}e User's Guide. Version 1.7},
202     institution = {Institut National de Recherche en Informatique
203     et en Automatique},
204     type = {Rapport Technique},
205     number = {0224},
206     address = {INRIA; 2004, route des Luciolis, B.P. 93;
207     06902 Sophia Antipolis Cedex; France},
208     note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
209     }
210    
211     @Article{fau:00,
212     author = {C. Faure},
213     year = {2000},
214     title = {Adjoining strategies for multi-layered programs},
215     journal = {Optimisation Methods and Software},
216     note = {in press},
217     }
218    
219 dfer 1.34 @Article{fer-eta:05,
220     author = {D. Ferreira and J. Marshall and P. Heimbach},
221     year = 2005,
222     title = {Estimating Eddy Stresses by Fitting Dynamics to Observations
223     using a Residual-Mean Ocean Circulation Model and Its Adjoint},
224     journal = jpo,
225     volume = {35},
226     pages = {1891--1910},
227     }
228    
229 heimbach 1.1 @Article{gen-mcw:90,
230     author = {P.R. Gent and J.C. McWilliams},
231     year = 1990,
232     title = {Isopycnal mixing in ocean circulation models},
233     journal = jpo,
234     volume = {20},
235     pages = {150--155},
236     }
237    
238     @Article{gen-eta:95,
239     author = {P.R. Gent and J. Willebrand and T.J. McDougall
240     and J.C. McWilliams},
241     year = 1995,
242     title = {Parameterizing eddy-induced tracer transports in
243     ocean circulation models},
244     journal = jpo,
245     volume = {25},
246     pages = {463--474},
247     }
248    
249     @Article{gie-kam:98,
250     author = {R. Giering and T. Kaminski},
251     year = 1998,
252     title = {Recipes for adjoint code construction},
253     journal = {ACM Transactions on Mathematical Software},
254     volume = 24,
255     pages = {437--474},
256     }
257    
258     @techreport{gie:99,
259     author = {R. Giering},
260     year = 1999,
261     title = {Tangent linear and Adjoint Model Compiler.
262     Users manual 1.4 (TAMC Version 5.2)},
263     institution = {Massachusetts Institute of Technology},
264     type = {Report},
265     number = {~},
266     address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
267     02139; USA},
268     note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
269     }
270    
271     @incollection{gie:00,
272     author = {R. Giering},
273     editor = {P. Kasibhatla and M. Heimann and P. Rayner and
274     N. Mahowald and R.G. Prinn and D.E. Hartley},
275     year = 2000,
276     booktitle = {Inverse methods in global biogeochemical cycles},
277     title = {Tangent linear and adjoint biogeochemical models},
278     publisher = {American Geophysical Union},
279     series = {Geophysical Monograph},
280     volume = {114},
281     address = {Washington, DC},
282     pages = {33--48},
283     }
284    
285     @Article{gil-lem:89,
286     author = {J.C. Gilbert and C. Lemar\'echal},
287     year = 1989,
288     title = {Some numerical experiments with variable-storage
289     quasi-Newton algorithms},
290     journal = {Math. Programming},
291     volume = {45},
292     pages = {407--435},
293     }
294    
295     @book{gil-eta:81,
296     author = {P.E. Gill and W. Murray and M.H. Wright},
297     title = {Practical optimization},
298     year = 1981,
299     publisher = {Academic Press},
300     address = {London},
301     pages = {401 pp.},
302     }
303    
304 heimbach 1.11 @incollection{gri:89,
305     author = {A. Griewank},
306     year = 1989,
307     title = {On automatic differentiation},
308     booktitle = {Mathematical Programming: Recent Developments and
309     Applications},
310     pages = {83--108},
311     editor = {M. Iri and K. Tanabe},
312     publisher = {Kluwer},
313     address = {Dordrecht, NL},
314     }
315    
316     @Article{gri:92,
317     author = {A.~Griewank},
318     title = {Achieving logarithmic growth of temporal and spatial
319     complexity in reverse {A}utomatic {D}ifferentiation},
320     journal = {Optimization Methods and Software},
321     year = {1992},
322     volume = {1},
323     pages = {35--54}
324     }
325    
326 heimbach 1.1 @book{gri:00,
327     author = {A. Griewank},
328     title = {Evaluating Derivatives. Principles and Techniques
329     of Algorithmic Differentiation},
330     year = 2000,
331     series = {Frontiers in Applied Mathematics},
332     volume = {19},
333     publisher = {SIAM},
334     address = {Philadelphia},
335     pages = {369 pp.},
336     }
337    
338     @Article{hal-eta:82,
339     author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
340     year = 1982,
341     title = {Sensitivity analysis of a radiative-convective
342     model by the adjoint method},
343     journal = jas,
344     volume = {39},
345     pages = {2038--3050},
346     }
347 cnh 1.6
348     @Article{Haney,
349     author = {R.L. Haney},
350     title = {Surface thermal boundary conditions for ocean
351     circulation models},
352     journal = jpo,
353     year = 1971,
354     volume = 1,
355     pages = {241--248}
356     }
357 heimbach 1.1
358 cnh 1.16 @Article{held-suar:94,
359     author = {I.M. Held and M.J. Suarez},
360     year = {1994},
361     title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
362     journal = {Bulletin of the American Meteorological Society},
363     volume = {75(10)},
364     pages = {1825-1830}
365     }
366    
367 heimbach 1.1 @Article{hil-eta:01,
368     author = {C. Hill and M. Follows and V. Bugnion and
369     J. Marshall},
370 cnh 1.10 year = {2002},
371 heimbach 1.1 title = {Spatial and Temporal Impacts of ocean general
372     circulation on carbon sequestration},
373 cnh 1.6 journal = {Global Biogeochemical Cycles},
374 heimbach 1.1 note = {submitted},
375     }
376 cnh 1.6
377 edhill 1.15 @ARTICLE{hib80,
378 mlosch 1.36 author = {Hibler, III, William D.},
379 edhill 1.15 TITLE = "Modeling a Variable Thickness Sea Ice Cover",
380     JOURNAL = mwr,
381     YEAR = 1980,
382     VOLUME = 1,
383     PAGES = "1943-1973"
384     }
385    
386 cnh 1.6 @Article{Holland75,
387     author = {W.R. Holland and L. B. Lin},
388     year = {1975a},
389     title = {On the origin of mesoscale eddies and their contribution
390     to the general circulation of the ocean. I. A preliminary
391     numerical experiment},
392     journal = jpo,
393     volume = {5},
394     pages = {642-657}
395     }
396    
397     @Article{hol-lin:75b,
398     author = {W.R. Holland and L. B. Lin},
399     year = {1975b},
400     title = {On the origin of mesoscale eddies and their contribution
401     to the general circulation of the ocean. II. A parameter
402     study},
403     journal = jpo,
404     volume = {5},
405     pages = {658-669}
406     }
407    
408 jmc 1.31 @Article{jam-oze:86,
409     author = {B.M. Jamart and J. Ozer},
410     year = {1986},
411     title = {Numerical boundary layers and spurious residual flows},
412     journal = jgr,
413     volume = {91},
414     pages = {10,621-10,631}
415     }
416    
417 heimbach 1.1 @book{kas-eta:00,
418     author = {P. Kasibhatla and M. Heimann and P. Rayner and
419     N. Mahowald and R.G. Prinn and D.E. Hartley},
420     year = 2000,
421     title = {Inverse methods in global biogeochemical cycles},
422     publisher = {American Geophysical Union},
423     series = {Geophysical Monograph},
424     volume = {114},
425     address = {Washington, DC},
426     pages = {324 pp.},
427     }
428    
429     @Article{lar-eta:94,
430     author = {W.G. Large and J.C. McWilliams and S.C. Doney},
431     year = 1994,
432     title = {Oceanic vertical mixing: A review and a model
433     with nonlocal boundary layer parameterization},
434     journal = {Rev.~Geophys.},
435     volume = {32},
436     pages = {363--403},
437     }
438    
439     @Article{lar-eta:97,
440     author = {W.G. Large and G. Danabasoglu and S.C. Doney
441     and J.C. McWilliams},
442     year = 1997,
443     title = {Sensitivity to surface forcing and boundary layer
444     mixing in a global ocean model: annual-mean
445     climatology},
446     journal = jpo,
447     volume = {27},
448     pages = {2418--2447},
449     }
450    
451     @Article{led-tal:86,
452     author = {F.-X. {Le Dimet} and O. Talagrand},
453     year = 1986,
454     title = {Variational algorithms for analysis and
455     assimilation of meteorological observations:
456     theoretical aspects},
457     journal = tel,
458     volume = {38A},
459     pages = {97--110},
460     }
461 cnh 1.6
462     @TechReport{lev:94a,
463     author = {S. Levitus and T.P.Boyer},
464     title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
465     institution = {NOAA Atlas NESDIS 3},
466     year = 1994,
467     OPTkey = {},
468     OPTtype = {},
469     OPTnumber = {},
470     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
471     OPTmonth = {},
472     OPTnote = {},
473     OPTannote = {}
474     }
475    
476    
477     @TechReport{Levitus94,
478     author = {S. Levitus and T.P.Boyer},
479     title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
480     institution = {NOAA Atlas NESDIS 4},
481     year = 1994,
482     OPTkey = {},
483     OPTtype = {},
484     OPTnumber = {},
485     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
486     OPTmonth = {},
487     OPTnote = {},
488     OPTannote = {}
489     }
490    
491 heimbach 1.1
492     @Article{lew-der:85,
493     author = {J. Lewis and J. Derber},
494     year = {1985},
495     title = {The use of adjoint equations to solve a variational
496     adjustment problem with advective constraints},
497     journal = {Tellus},
498     volume = {37A},
499     pages = {309--322},
500     }
501    
502     @techreport{lon:88,
503     author = {R.B. Long},
504     year = 1988,
505     title = {Notes on assimilating observations into
506     numerical models},
507     institution = {Delft Hydraulics},
508     type = {Report},
509     number = {~},
510     pages = {38 pp.},
511     address = {Delft (NL)},
512     }
513 cnh 1.29
514     @ARTICLE{losc-heim:06,
515     author = {M. Losch and P. Heimbach},
516     title = {Adjoint sensitivity of an ocean general circulation model
517     to bottom topography},
518     journal = jpo,
519     year = {2006},
520     volume = {{in press}},
521     url = {http://mitgcm.org/pdfs/Los2006a.pdf},
522     }
523    
524 heimbach 1.1
525     @Article{maro-wun:93,
526     author = {J. Marotzke and C. Wunsch},
527     year = 1993,
528     title = {Finding the steady state of a general circulation
529     model through data assimilation:
530     Application to the North Atlantic Ocean},
531     journal = jgr,
532     volume = {98, C11},
533     pages = {20,149--20,167},
534     }
535    
536     @Article{maro-eta:99,
537     author = {J. Marotzke and R. Giering and K.Q. Zhang and
538     D. Stammer and C. Hill and T. Lee},
539     year = 1999,
540     title = {Construction of the adjoint MIT ocean general
541     circulation model and application to Atlantic heat
542     transport variability},
543     journal = jgr,
544     volume = {104, C12},
545     pages = {29,529--29,547},
546     }
547    
548     @Article{mars-eta:97a,
549     author = {J. Marshall and C. Hill and L. Perelman and
550     A. Adcroft},
551     year = {1997a},
552     title = {Hydrostatic, quasi-hydrostatic and
553     nonhydrostatic ocean modeling},
554     journal = jgr,
555     volume = {102, C3},
556     pages = {5,733--5,752},
557     }
558    
559     @Article{mars-eta:97b,
560     author = {J. Marshall and A. Adcroft and C. Hill and
561     L. Perelman and C. Heisey},
562     year = {1997b},
563     title = {Hydrostatic, quasi-hydrostatic and
564     nonhydrostatic ocean modeling},
565     journal = jgr,
566     volume = {102, C3},
567     pages = {5,753--5,766},
568     }
569    
570 jmc 1.33 @Article{mars-eta:98,
571 heimbach 1.1 author = {J. Marshall and H. Jones and C. Hill},
572     year = 1998,
573     title = {Efficient ocean modeling using
574     non-hydrostatic algorithms},
575     journal = jms,
576     volume = {18},
577     pages = {115--134},
578 cnh 1.29 url = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf},
579     doi = {10.1016/S0924-7963\%2898\%2900008-6},
580 heimbach 1.1 }
581    
582     @Article{mcw:96,
583     author = {J. McWilliams},
584     year = 1996,
585     title = {Modeling the oceanic general circulation},
586     journal = arfm,
587     volume = {28},
588     pages = {215--248},
589     }
590 edhill 1.13
591     %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
592     %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
593     %% (Available from Unidata or in PostScript form by anonymous FTP from
594     %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
595     %% a hypertext version of the User's Guide available at
596     %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
597     %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
598     %% also available.
599    
600 heimbach 1.32 @incollection{naum-etal:06,
601     Author = {U. Naumann and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and M. Strout},
602     Booktitle = {European Conference on Computational Fluid Dynamics ECCOMAS CFD 2006},
603     Editor = {{P. Wesseling, E. O~nate and J. Periaux}},
604     Pages = {~},
605     Publisher = {TU Delft},
606     Title = {Adjoint code by source transformation with OpenAD/F},
607     Year = {2006}}
608    
609 edhill 1.13 @TechReport{rew:97,
610     author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
611     title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
612     An Interface for Data Access, Version 3},
613     institution = {Unidata Program Center},
614     type = {Report},
615     address = {Boulder, Colorado},
616     year = 1997,
617     note = {http://www.unidata.ucar.edu/packages/netcdf/},
618     }
619    
620    
621 heimbach 1.1 @Article{res-eta:98,
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623     year = 1998,
624 cnh 1.5 title = {Circumventing storage limitations in variational
625 heimbach 1.1 data assimilation studies},
626     journal = {SIAM J. Sci. Comput.},
627     volume = {19},
628     pages = {1586--1605},
629     }
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636     volume = {45A},
637     pages = {558--568},
638     }
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645     booktitle = {Oceanic circulation models:
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647     pages = {257--285},
648     series = {NATO ASI Series},
649     volume = {C 284},
650     editor = {{D.L.T. Anderson and J. Willebrand}},
651     publisher = {Springer-Verlag},
652     address = {Berlin (Germany)},
653     }
654 cnh 1.6
655 heimbach 1.32 @article{utke-etal:08,
656     Author = {J. Utke and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch},
657     Date-Modified = {2007-11-19 10:15:08 -0500},
658     Journal = {{ACM} Transactions on Mathematical Software},
659     Pages = {~},
660     Title = {OpenAD/F: A modular open source tool for automatic differentiation of Fortran codes},
661     Volume = {34(4)},
662     Year = {2008}}
663    
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667     title = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
668     journal = {NOAA Atlas NESDIS},
669     volume = {6},
670     publisher = {U.S. Department of Commerce},
671     address = {Washington, D.C. (USA)},
672     note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
673 cnh 1.28 url = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
674 cnh 1.6 }
675 heimbach 1.1
676 heimbach 1.32 @techreport{stam-etal:97,
677 heimbach 1.1 author = {D. Stammer and C. Wunsch and R. Giering and
678 cnh 1.6 Q. Zhang and J. Marotzke and J. Marshall and
679 heimbach 1.1 C. Hill},
680     year = 1997,
681     title = {The global ocean circulation estimated from
682     TOPEX/POSEIDON altimetry and a general circulation
683     model},
684     institution = {Center for Global Change Science, Massachusetts
685     Institute of Technology},
686     type = {Technical Report},
687     number = {49},
688     pages = {40 pp.},
689     address = {Cambridge (MA), USA},
690     }
691    
692 heimbach 1.32 @ARTICLE{stam-etal:02,
693 cnh 1.29 author = {D. Stammer and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C.N. Hill and J. Marshall},
694     title = {The global ocean circulation and transports during 1992 -- 1997, estimated from ocean observations and a general circulation model.},
695     journal = jgr,
696     year = {2002a},
697     volume = {107(C9)},
698     pages = {3118},
699     doi = {10.1029/2001JC000888},
700     }
701    
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703     @Article{Stommel66,
704     author = {H. Stommel},
705     year = 1948,
706     title = {The western intensification of wind-driven ocean currents},
707     journal = {Trans. Am. Geophys. Union},
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728     volume = {75},
729     pages = {191--209},
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732     @book{tar:87,
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736     year = 1987,
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741    
742     @techreport{tha:87,
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744     year = 1987,
745     title = {Three lectures on fitting numerical models to
746     observations},
747     institution = {GKSS},
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750     pages = {64 pp.},
751     address = {Geesthacht (D)},
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753    
754     @Article{tha-lon:88,
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756     year = 1988,
757     title = {Fitting dynamics to data},
758     journal = jgr,
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760     pages = {1,227--1,240},
761     }
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763     @Article{tha:88,
764     author = {W.C. Thacker},
765     year = 1988,
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767     spatial and temporal smoothness},
768     journal = jgr,
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772    
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775     year = 1989,
776     title = {The role of the Hessian matrix in fitting models
777     to measurements},
778     journal = jgr,
779     volume = {94, C5},
780     pages = {6,177--6,196},
781     }
782    
783     @Article{tha-rag:94,
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785     year = 1994,
786     title = {The rigid lid's contribution to the ill-conditioning
787     of oceanic inverse problems},
788     journal = jgr,
789     volume = {99, C5},
790     pages = {10,131--10,141},
791     }
792    
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794     author = {E. Tziperman and W.C. Thacker},
795     year = {1989},
796     title = {An optimal control / adjoint equation approach
797     to studying the ocean general circulation},
798     journal = jpo,
799     volume = {19},
800     pages = {1471--1485},
801     }
802    
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805     S. Hwang},
806     year = {1992a},
807     title = {Oceanic data analysis using a general circulation
808     model. I: Simulations},
809     journal = jpo,
810     volume = {22},
811     pages = {1434--1457},
812     }
813    
814     @Article{tzi-eta:92b,
815     author = {E. Tziperman and W.C. Thacker and R.B. Long and
816     S. Hwang and S.R. Rintoul},
817     year = {1992b},
818     title = {Oceanic data analysis using a general circulation
819     model. I: A North Atlantic model},
820     journal = jpo,
821     volume = {22},
822     pages = {1458--1485},
823     }
824    
825     @book{wun:96,
826     author = {C. Wunsch},
827     title = {The ocean circulation inverse problem},
828     year = 1996,
829     publisher = cup,
830     address = {Cambridge (UK)},
831     pages = {442 pp.},
832     }
833    
834     @Article{zha-mar:99,
835     author = {K.Q. Zhang and J. Marotzke},
836     year = 1999,
837     title = {The importance of open-boundary estimation for an
838     Indian Ocean GCM-data synthesis},
839     journal = {J.~Marine Res.},
840     volume = {57},
841     pages = {305--334},
842     }
843 adcroft 1.2
844    
845     @InCollection{hill:95,
846     author = {Hill, C. and J. Marshall},
847     title = {Application of a Parallel Navier-Stokes Model to
848     Ocean Circulation in Parallel Computational Fluid
849     Dynamics},
850     booktitle = {Implementations and Results Using Parallel
851     Computers},
852     pages = {545-552},
853     publisher = {Elsevier Science B.V.: New York},
854     year = 1995,
855     editor = {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
856     }
857    
858    
859     @Article{marshall:97a,
860 adcroft 1.4 author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
861 adcroft 1.2 title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
862     modeling},
863 jmc 1.25 journal = jgr,
864 adcroft 1.2 year = 1997,
865     volume = 102,
866     number = {C3},
867 cnh 1.29 pages = {5733-5752},
868     url = {http://mitgcm.org/pdfs/96JC02775.pdf},
869 adcroft 1.2 }
870    
871     @Article{marshall:97b,
872 cnh 1.10 author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
873 adcroft 1.2 title = {A finite-volume, incompressible Navier Stokes model for
874     studies of the ocean on parallel computers},
875 jmc 1.25 journal = jgr,
876 adcroft 1.2 year = 1997,
877     volume = 102,
878     number = {C3},
879 cnh 1.29 pages = {5753-5766},
880     url = {http://mitgcm.org/pdfs/96JC02776.pdf},
881 adcroft 1.2 }
882    
883     @Article{adcroft:97,
884 adcroft 1.4 author = {Adcroft, A.J. and Hill, C.N. and J. Marshall},
885 adcroft 1.2 title = {Representation of topography by shaved cells in a height
886     coordinate ocean model},
887 jmc 1.25 journal = mwr,
888 adcroft 1.2 year = 1997,
889     volume = 125,
890 cnh 1.29 pages = {2293-2315},
891     url = {http://mitgcm.org/pdfs/mwr_1997.pdf},
892     doi = {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2},
893 adcroft 1.2 }
894    
895 jmc 1.19 @Article{adcroft:04a,
896     author = {Adcroft, A. and J.-M. Campin},
897 jmc 1.14 title = {Re-scaled height coordinates for accurate representation
898     of free-surface flows in ocean circulation models},
899     journal = om,
900     year = 2004,
901 jmc 1.19 volume = 7,
902 cnh 1.28 pages = {269-284},
903     doi = {10.1016/j.ocemod.2003.09.003},
904 jmc 1.19 }
905    
906     @Article{adcroft:04b,
907     author = {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
908     title = {Implementation of an Atmosphere-Ocean General Circulation Model
909     on the Expanded Spherical Cube},
910     journal = mwr,
911     year = 2004,
912     volume = 132,
913 cnh 1.29 pages = {2845-2863},
914     url = {http://mitgcm.org/pdfs/mwr_2004.pdf},
915     doi = {10.1175/MWR2823.1},
916 jmc 1.19 }
917    
918 jmc 1.33 @inproceedings{adcroft:04c,
919     author = {Adcroft, A. and C. Hill and J.-M. Campin and J. Marshall
920     and P. Heimbach},
921 jmc 1.35 title = {Overview of the Formulation and Numerics of the {MIT}GCM},
922 jmc 1.33 booktitle = {Proceedings of the ECMWF seminar series on Numerical Methods,
923     Recent developments in numerical methods for atmosphere and
924     ocean modelling},
925     year = 2004,
926     pages = {139-149},
927     url = {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf},
928     publisher = ecmwf
929     }
930    
931 jmc 1.19 @Article{marshall:04,
932     author = {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
933     title = {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
934     journal = mwr,
935     year = 2004,
936     volume = 132,
937 cnh 1.29 pages = {2882-2894},
938     url = {http://mitgcm.org/pdfs/a_o_iso.pdf},
939     doi = {10.1175/MWR2835.1},
940 jmc 1.14 }
941    
942 adcroft 1.2 @Article{visbeck:97,
943     author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
944     title = {Specification of eddy transfer coefficients in
945     coarse-resolution ocean circulation models},
946 jmc 1.25 journal = jpo,
947 adcroft 1.2 year = 1997,
948     volume = 27,
949     number = 3,
950     pages = {381-402}
951     }
952    
953     @Article{shaw:98,
954     author = {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
955     and Marshall, J.},
956     title = {A comparison of implicitly parallel multi-threaded and
957     data-parallel implementations of an ocean model based
958     on the Navier-Stokes equations},
959     journal = {J. of Parallel and Distributed Computing},
960     year = 1998,
961     volume = 48,
962     number = 1,
963     pages = {1-51}
964     }
965    
966     @Article{mjn:99,
967     author = {Marshall, J., Jamous, D and J. Nilsson},
968     title = {Reconciling `thermodynamic' and `dynamic' methods of
969     computation of water-mass transformation rates},
970     journal = {DSR},
971     year = 1999,
972     volume = 46,
973     pages = {545-572}
974     }
975    
976     @Article{ms:99,
977     author = {Marshall, J and F. Schott},
978     title = {Open ocean deep convection: observations, models and theory},
979     journal = {Rev. Geophys.},
980     year = 1999,
981     volume = 37,
982     number = 1,
983     pages = {1-64}
984     }
985    
986     @Article{adcroft:99,
987     author = {Adcroft, A., Hill C. and J. Marshall},
988     title = {A new treatment of the Coriolis terms in C-grid models
989     at both high and low resolutions},
990 jmc 1.25 journal = mwr,
991 adcroft 1.2 year = 1999,
992     volume = 127,
993 cnh 1.29 pages = {1928-1936},
994     url = {http://mitgcm.org/pdfs/mwr_1999.pdf},
995     doi = {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2},
996 adcroft 1.2 }
997    
998     @InProceedings{hill:99,
999     author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
1000     title = {A Strategy for Terascale Climate Modeling},
1001 cnh 1.8 booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
1002 cnh 1.9 year = 1999,
1003     pages = {406-425},
1004     publisher = {World Scientific},
1005 adcroft 1.2 }
1006    
1007     @Article{wardle:00,
1008     author = {Wardle R. and Marshall J.},
1009     title = {Representation of eddies in primitive equation models by a PV flux},
1010 jmc 1.25 journal = jpo,
1011 adcroft 1.2 year = 2000,
1012     volume = 30,
1013     number = 10,
1014     pages = {2481-2503}
1015     }
1016    
1017     @Article{ac:02,
1018     author = {Adcroft, A. and J.-M. Campin},
1019     title = {Comparison of finite volume schemes and direct-space-time
1020     methods for ocean circulation models},
1021 jmc 1.14 journal = om,
1022 adcroft 1.2 year = 2002,
1023     note = {in preparation}
1024     }
1025    
1026     @Article{adcroft:02,
1027 jmc 1.25 author = {Adcroft, A., et~al.},
1028 adcroft 1.2 title = {Energy conversion in discrete numerical models},
1029 jmc 1.14 journal = om,
1030 adcroft 1.2 year = 2002,
1031     note = {in preparation}
1032     }
1033    
1034     @InCollection{arakawa:77,
1035     author = {Arakawa, A. and Lamb, V.},
1036     title = {Computational Design of the Basic Dynamical Processes of
1037     the UCLA General Circulation Model},
1038     booktitle = {Methods in Computational Physics},
1039     pages = {174-267},
1040     publisher = {Academic Press},
1041     year = 1977,
1042     volume = 17
1043     }
1044    
1045 jmc 1.24 @Article{miller_white:84,
1046     author = {Miller, M. J. and White, A. A.},
1047     title = {On the non-hydrostatic equations in pressure
1048     and sigma coordiantes},
1049 jmc 1.25 journal = qjrms,
1050 jmc 1.24 year = 1984,
1051     volume = 110,
1052     pages = {515-533}
1053     }
1054    
1055     @Article{white:89,
1056     author = {White, A. A.},
1057     title = {An extended version of a nonhydrostatic, pressure coordiante model},
1058 jmc 1.25 journal = qjrms,
1059 jmc 1.24 year = 1989,
1060     volume = 115,
1061     pages = {1243-1251}
1062     }
1063    
1064 adcroft 1.2 @Article{adcroft:98,
1065     author = {Adcroft, A. and Marshall, D.},
1066 adcroft 1.3 title = {How slippery are piecewise-constant coastlines in numerical
1067     ocean models?},
1068 adcroft 1.2 journal = {Tellus},
1069 adcroft 1.3 year = 1998,
1070     volume = 50,
1071     number = 1,
1072     pages = {95-108}
1073     }
1074    
1075     @PhdThesis{adcroft:95,
1076     author = {Adcroft, A.},
1077     title = {Numerical Algorithms for use in a Dynamical Model of the
1078     Ocean},
1079     school = {Imperial College, London},
1080     year = 1995
1081     }
1082    
1083     @Article{griffies:00,
1084     author = {Griffies, S.,M. and Hallberg, R.,W.},
1085     title = {Biharmonic friction with a Smagorinsky-like viscosity for
1086     use in large-scale eddy-permitting ocean models},
1087 jmc 1.25 journal = mwr,
1088 adcroft 1.3 year = 2000,
1089     volume = 128,
1090     number = 8,
1091     pages = {2935-2946}
1092     }
1093    
1094     @Article{wajsowicz:93,
1095     author = {Wajsowicz, R.},
1096     title = {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
1097     FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
1098 jmc 1.25 journal = jcp,
1099 adcroft 1.3 year = 1993,
1100     volume = 105,
1101     number = 2,
1102     pages = {333-338}
1103     }
1104    
1105     @Article{campin:02,
1106 jmc 1.14 author = {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
1107 adcroft 1.3 title = {Conservation of properties in a free-surface model},
1108 jmc 1.14 journal = om,
1109     year = 2004,
1110     volume = 6,
1111     pages = {221-244}
1112 adcroft 1.4 }
1113    
1114     @Article{dm:95,
1115     author = {Danabasoglu, G. and McWilliams J.C.},
1116     title = {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
1117 jmc 1.25 journal = jclim,
1118 adcroft 1.4 year = 1995,
1119     volume = 8,
1120     number = 12,
1121     pages = {2967-2987}
1122     }
1123    
1124     @Article{ldd:97,
1125     author = {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
1126     title = {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
1127 jmc 1.25 journal = jpo,
1128 adcroft 1.4 year = 1997,
1129     volume = 27,
1130     number = 11,
1131     pages = {2418-2447}
1132     }
1133    
1134     @Article{gkw:99,
1135     author = {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
1136     title = {Mechanisms for spreading of Mediterranean water in
1137     coarse-resolution numerical models},
1138 jmc 1.25 journal = jpo,
1139 adcroft 1.4 year = 1999,
1140     volume = 29,
1141     number = 8,
1142     pages = {1682-1700}
1143     }
1144    
1145 jmc 1.17 @incollection{roe:85,
1146     author = {P.L. Roe},
1147     year = 1985,
1148     title = {Some contributions to the modelling of discontinuous flows},
1149     booktitle = {Large-Scale Computations in Fluid Mechanics},
1150     series = {Lectures in Applied Mathematics},
1151     volume = 22,
1152     pages = {163-193},
1153     editor = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1154     publisher = {American Mathematical Society},
1155     address = {Providence, RI},
1156 adcroft 1.2 }
1157    
1158 mlosch 1.12 @Article{trenberth90,
1159     author = {K. M. Trenberth and J. Olson and W. G. Large},
1160     title = {The Mean Annual Cycle in {G}lobal {O}cean Wind
1161     Stress},
1162     journal = jpo,
1163     year = 1990,
1164     volume = 20,
1165     pages = {1742--1760}
1166 jmc 1.14 }
1167    
1168     @Article{molteni:03,
1169 jmc 1.27 author = {F. Molteni},
1170 edhill 1.30 title = {Atmospheric simulations using a {GCM} with simplified physical
1171     parametrization, {I}: Model climatology and variability in
1172 jmc 1.14 multidecadal experiments},
1173     journal = climd,
1174     year = 2003,
1175     volume = 20,
1176     pages = {175--191}
1177 mlosch 1.12 }
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1179     @Article{jiang99,
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1280 edhill 1.15 TITLE = "Modeling pack ice as a cavitating fluid",
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