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1 heimbach 1.1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
2     @string{bams = {Bull.~Am.~Met.~Soc.}}
3     @string{blm = {Bound.~Layer~Meteorol.}}
4 jmc 1.14 @string{climd = {Clim.~Dynamics}}
5 heimbach 1.1 @string{jgr = {J.~Geophys.~Res.}}
6     @string{ijrs = {Int.~J.~Remote Sensing}}
7     @string{jas = {J.~Atmos.~Sci.}}
8     @string{jpo = {J.~Phys.~Oceanogr.}}
9     @string{jclim = {J.~Clim.}}
10     @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
11     @string{jfm = {J.~Fluid Mech.}}
12     @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
13     @string{jms = {J.~Mar.~Sys.}}
14 jmc 1.14 @string{om = {Ocean Modelling}}
15 heimbach 1.1 @string{gaos = {Global Atmos.~Ocean System}}
16     @string{grl = {Geophys.~Res.~Lett.}}
17     @string{dsr = {Deep Sea Res.}}
18     @string{dao = {Dyn.~Atmos.~Oceans}}
19     @string{mwr = {Mon.~Wea.~Rev.}}
20     @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
21     @string{tel = {Tellus}}
22     @string{cup = {Cambridge University Press}}
23     @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
24     @string{ifremer = {IFREMER/CERSAT}}
25     @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
26     @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
27     @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
28     @string{mpi = {MPI f\"ur Meteorologie}}
29     @string{ecmwf = {ECMWF}}
30     @string{estec = {European Space Research and Technology Centre
31     (ESTEC)}}
32     @string{esa = {European Space Agency (ESA)}}
33    
34     @Article{bis-eta:92,
35     author = {C.H. Bishof and G.F. Corliss and L. Green and
36     A. Griewank and K. Haigler and P. Newman},
37     year = 1992,
38     title = {Automatic differentiation of advanced GFD codes
39     for multidisciplinary design},
40     journal = {Journal on Computing Systems in Engineering},
41     volume = {3},
42     pages = {625--638},
43     }
44    
45     @incollection{bis:94,
46     author = {C.H. Bishof},
47     year = 1994,
48     title = {Automatic differentiation, tangent linear models
49     and pseudo-adjoints},
50     booktitle = {High Performance Computing in the Geosciences},
51     series = {Series C: Mathematical and Physical Sciences},
52     pages = {59--80},
53     editor = {F.X. {Le Dimet}},
54     publisher = {Kluwer},
55     address = {Dordrecht, NL},
56     }
57    
58     @techreport{bis-eta:94,
59     author = {C. Bishof and A. Carle and P. Khademi and
60     A. Maurer},
61     year = 1994,
62     title = {The ADIFOR 2.0 system for the automatic
63     differentiation of FORTRAN 77 programs},
64     institution = {Argonne National Laboratory, Mathematics and
65     Computer Science Division},
66     type = {Argonne Preprint},
67     number = {ANL-MCS-P981-1194},
68     address = {ANL; 9700 South Cass Ave.;
69     Argonne (ILL), 90439; USA},
70     note = {http://www.mcs.anl.gov/autodiff/},
71     }
72    
73     @techreport{bis-roh:97,
74     author = {C. Bishof and L. Roh},
75     year = 1997,
76     title = {ADIC: An extensible automatic differentiation tool
77     for ANSI-C},
78     institution = {Argonne National Laboratory, Mathematics and
79     Computer Science Division},
80     type = {Argonne Preprint},
81     number = {ANL-MCS-P626-1196},
82     address = {ANL; 9700 South Cass Ave.;
83     Argonne (ILL), 90439; USA},
84     note = {http://www.mcs.anl.gov/autodiff/},
85     }
86    
87     @Article{cou-tal:87,
88     author = {P. Courtier and O. Talagrand},
89     year = 1987,
90     title = {Variational assimilation of meteorological
91     observations with the adjoint vorticity equation.
92     II: Numerical results},
93     journal = qjrms,
94     volume = {113},
95     pages = {1329--1347},
96     }
97    
98     @Article{cou-tal:90,
99     author = {P. Courtier and O. Talagrand},
100     year = 1990,
101     title = {Variational assimilation of meteorological
102     observations with direct and adjoint shallow-water
103     equations},
104     journal = tel,
105     volume = {42A},
106     pages = {531--549},
107     }
108    
109     @Article{cou-eta:94,
110     author = {P. Courtier and J.-N. Th{\'e}paut and
111     A. Hollingsworth},
112     year = 1994,
113     title = {A strategy for operational implementation of
114     4-D-VAR using an incremental approach},
115     journal = qjrms,
116     volume = {120},
117     pages = {1367--1387},
118     }
119    
120     @Article{err:97,
121     author = {R.M. Errico},
122     year = 1997,
123     title = {What is an adjoint model},
124     journal = bams,
125     volume = {78},
126     pages = {2577--2591},
127     }
128    
129     @Article{far-moo:92,
130     author = {B.F. Farrell and A.M. Moore},
131     year = {1992},
132     title = {An adjoint method for obtaining the most rapidly
133     growing perturbation to oceanic flows},
134     journal = jpo,
135     volume = {22},
136     pages = {338--349},
137     }
138    
139     @Article{far-ioa:96a,
140     author = {B.F. Farrell and P. Ioannou},
141     year = {1996a},
142     title = {Generalized stability theory. Part I:
143     Autonomous operators},
144     journal = jas,
145     volume = {53},
146     pages = {2025--2040},
147     }
148    
149     @Article{far-ioa:96b,
150     author = {B.F. Farrell and P. Ioannou},
151     year = {1996b},
152     title = {Generalized stability theory. Part I:
153     Nonautonomous operators},
154     journal = jas,
155     volume = {53},
156     pages = {2041--2053},
157     }
158    
159     @techreport{fau-pap:98,
160     author = {C. Faure and Y. Papegay},
161     year = 1998,
162     title = {Odyss{\'e}e User's Guide. Version 1.7},
163     institution = {Institut National de Recherche en Informatique
164     et en Automatique},
165     type = {Rapport Technique},
166     number = {0224},
167     address = {INRIA; 2004, route des Luciolis, B.P. 93;
168     06902 Sophia Antipolis Cedex; France},
169     note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
170     }
171    
172     @Article{fau:00,
173     author = {C. Faure},
174     year = {2000},
175     title = {Adjoining strategies for multi-layered programs},
176     journal = {Optimisation Methods and Software},
177     note = {in press},
178     }
179    
180     @Article{gen-mcw:90,
181     author = {P.R. Gent and J.C. McWilliams},
182     year = 1990,
183     title = {Isopycnal mixing in ocean circulation models},
184     journal = jpo,
185     volume = {20},
186     pages = {150--155},
187     }
188    
189     @Article{gen-eta:95,
190     author = {P.R. Gent and J. Willebrand and T.J. McDougall
191     and J.C. McWilliams},
192     year = 1995,
193     title = {Parameterizing eddy-induced tracer transports in
194     ocean circulation models},
195     journal = jpo,
196     volume = {25},
197     pages = {463--474},
198     }
199    
200     @Article{gie-kam:98,
201     author = {R. Giering and T. Kaminski},
202     year = 1998,
203     title = {Recipes for adjoint code construction},
204     journal = {ACM Transactions on Mathematical Software},
205     volume = 24,
206     pages = {437--474},
207     }
208    
209     @techreport{gie:99,
210     author = {R. Giering},
211     year = 1999,
212     title = {Tangent linear and Adjoint Model Compiler.
213     Users manual 1.4 (TAMC Version 5.2)},
214     institution = {Massachusetts Institute of Technology},
215     type = {Report},
216     number = {~},
217     address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
218     02139; USA},
219     note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
220     }
221    
222     @incollection{gie:00,
223     author = {R. Giering},
224     editor = {P. Kasibhatla and M. Heimann and P. Rayner and
225     N. Mahowald and R.G. Prinn and D.E. Hartley},
226     year = 2000,
227     booktitle = {Inverse methods in global biogeochemical cycles},
228     title = {Tangent linear and adjoint biogeochemical models},
229     publisher = {American Geophysical Union},
230     series = {Geophysical Monograph},
231     volume = {114},
232     address = {Washington, DC},
233     pages = {33--48},
234     }
235    
236     @Article{gil-lem:89,
237     author = {J.C. Gilbert and C. Lemar\'echal},
238     year = 1989,
239     title = {Some numerical experiments with variable-storage
240     quasi-Newton algorithms},
241     journal = {Math. Programming},
242     volume = {45},
243     pages = {407--435},
244     }
245    
246     @book{gil-eta:81,
247     author = {P.E. Gill and W. Murray and M.H. Wright},
248     title = {Practical optimization},
249     year = 1981,
250     publisher = {Academic Press},
251     address = {London},
252     pages = {401 pp.},
253     }
254    
255 heimbach 1.11 @incollection{gri:89,
256     author = {A. Griewank},
257     year = 1989,
258     title = {On automatic differentiation},
259     booktitle = {Mathematical Programming: Recent Developments and
260     Applications},
261     pages = {83--108},
262     editor = {M. Iri and K. Tanabe},
263     publisher = {Kluwer},
264     address = {Dordrecht, NL},
265     }
266    
267     @Article{gri:92,
268     author = {A.~Griewank},
269     title = {Achieving logarithmic growth of temporal and spatial
270     complexity in reverse {A}utomatic {D}ifferentiation},
271     journal = {Optimization Methods and Software},
272     year = {1992},
273     volume = {1},
274     pages = {35--54}
275     }
276    
277 heimbach 1.1 @book{gri:00,
278     author = {A. Griewank},
279     title = {Evaluating Derivatives. Principles and Techniques
280     of Algorithmic Differentiation},
281     year = 2000,
282     series = {Frontiers in Applied Mathematics},
283     volume = {19},
284     publisher = {SIAM},
285     address = {Philadelphia},
286     pages = {369 pp.},
287     }
288    
289     @Article{hal-eta:82,
290     author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
291     year = 1982,
292     title = {Sensitivity analysis of a radiative-convective
293     model by the adjoint method},
294     journal = jas,
295     volume = {39},
296     pages = {2038--3050},
297     }
298 cnh 1.6
299     @Article{Haney,
300     author = {R.L. Haney},
301     title = {Surface thermal boundary conditions for ocean
302     circulation models},
303     journal = jpo,
304     year = 1971,
305     volume = 1,
306     pages = {241--248}
307     }
308 heimbach 1.1
309 cnh 1.16 @Article{held-suar:94,
310     author = {I.M. Held and M.J. Suarez},
311     year = {1994},
312     title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
313     journal = {Bulletin of the American Meteorological Society},
314     volume = {75(10)},
315     pages = {1825-1830}
316     }
317    
318 heimbach 1.1 @Article{hil-eta:01,
319     author = {C. Hill and M. Follows and V. Bugnion and
320     J. Marshall},
321 cnh 1.10 year = {2002},
322 heimbach 1.1 title = {Spatial and Temporal Impacts of ocean general
323     circulation on carbon sequestration},
324 cnh 1.6 journal = {Global Biogeochemical Cycles},
325 heimbach 1.1 note = {submitted},
326     }
327 cnh 1.6
328 edhill 1.15 @ARTICLE{hib80,
329     AUTHOR = "W. D. {Hibler, III}",
330     TITLE = "Modeling a Variable Thickness Sea Ice Cover",
331     JOURNAL = mwr,
332     YEAR = 1980,
333     VOLUME = 1,
334     PAGES = "1943-1973"
335     }
336    
337 cnh 1.6 @Article{Holland75,
338     author = {W.R. Holland and L. B. Lin},
339     year = {1975a},
340     title = {On the origin of mesoscale eddies and their contribution
341     to the general circulation of the ocean. I. A preliminary
342     numerical experiment},
343     journal = jpo,
344     volume = {5},
345     pages = {642-657}
346     }
347    
348     @Article{hol-lin:75b,
349     author = {W.R. Holland and L. B. Lin},
350     year = {1975b},
351     title = {On the origin of mesoscale eddies and their contribution
352     to the general circulation of the ocean. II. A parameter
353     study},
354     journal = jpo,
355     volume = {5},
356     pages = {658-669}
357     }
358    
359 heimbach 1.1 @book{kas-eta:00,
360     author = {P. Kasibhatla and M. Heimann and P. Rayner and
361     N. Mahowald and R.G. Prinn and D.E. Hartley},
362     year = 2000,
363     title = {Inverse methods in global biogeochemical cycles},
364     publisher = {American Geophysical Union},
365     series = {Geophysical Monograph},
366     volume = {114},
367     address = {Washington, DC},
368     pages = {324 pp.},
369     }
370    
371     @Article{lar-eta:94,
372     author = {W.G. Large and J.C. McWilliams and S.C. Doney},
373     year = 1994,
374     title = {Oceanic vertical mixing: A review and a model
375     with nonlocal boundary layer parameterization},
376     journal = {Rev.~Geophys.},
377     volume = {32},
378     pages = {363--403},
379     }
380    
381     @Article{lar-eta:97,
382     author = {W.G. Large and G. Danabasoglu and S.C. Doney
383     and J.C. McWilliams},
384     year = 1997,
385     title = {Sensitivity to surface forcing and boundary layer
386     mixing in a global ocean model: annual-mean
387     climatology},
388     journal = jpo,
389     volume = {27},
390     pages = {2418--2447},
391     }
392    
393     @Article{led-tal:86,
394     author = {F.-X. {Le Dimet} and O. Talagrand},
395     year = 1986,
396     title = {Variational algorithms for analysis and
397     assimilation of meteorological observations:
398     theoretical aspects},
399     journal = tel,
400     volume = {38A},
401     pages = {97--110},
402     }
403 cnh 1.6
404     @TechReport{lev:94a,
405     author = {S. Levitus and T.P.Boyer},
406     title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
407     institution = {NOAA Atlas NESDIS 3},
408     year = 1994,
409     OPTkey = {},
410     OPTtype = {},
411     OPTnumber = {},
412     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
413     OPTmonth = {},
414     OPTnote = {},
415     OPTannote = {}
416     }
417    
418    
419     @TechReport{Levitus94,
420     author = {S. Levitus and T.P.Boyer},
421     title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
422     institution = {NOAA Atlas NESDIS 4},
423     year = 1994,
424     OPTkey = {},
425     OPTtype = {},
426     OPTnumber = {},
427     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
428     OPTmonth = {},
429     OPTnote = {},
430     OPTannote = {}
431     }
432    
433 heimbach 1.1
434     @Article{lew-der:85,
435     author = {J. Lewis and J. Derber},
436     year = {1985},
437     title = {The use of adjoint equations to solve a variational
438     adjustment problem with advective constraints},
439     journal = {Tellus},
440     volume = {37A},
441     pages = {309--322},
442     }
443    
444     @techreport{lon:88,
445     author = {R.B. Long},
446     year = 1988,
447     title = {Notes on assimilating observations into
448     numerical models},
449     institution = {Delft Hydraulics},
450     type = {Report},
451     number = {~},
452     pages = {38 pp.},
453     address = {Delft (NL)},
454     }
455    
456     @Article{maro-wun:93,
457     author = {J. Marotzke and C. Wunsch},
458     year = 1993,
459     title = {Finding the steady state of a general circulation
460     model through data assimilation:
461     Application to the North Atlantic Ocean},
462     journal = jgr,
463     volume = {98, C11},
464     pages = {20,149--20,167},
465     }
466    
467     @Article{maro-eta:99,
468     author = {J. Marotzke and R. Giering and K.Q. Zhang and
469     D. Stammer and C. Hill and T. Lee},
470     year = 1999,
471     title = {Construction of the adjoint MIT ocean general
472     circulation model and application to Atlantic heat
473     transport variability},
474     journal = jgr,
475     volume = {104, C12},
476     pages = {29,529--29,547},
477     }
478    
479     @Article{mars-eta:97a,
480     author = {J. Marshall and C. Hill and L. Perelman and
481     A. Adcroft},
482     year = {1997a},
483     title = {Hydrostatic, quasi-hydrostatic and
484     nonhydrostatic ocean modeling},
485     journal = jgr,
486     volume = {102, C3},
487     pages = {5,733--5,752},
488     }
489    
490     @Article{mars-eta:97b,
491     author = {J. Marshall and A. Adcroft and C. Hill and
492     L. Perelman and C. Heisey},
493     year = {1997b},
494     title = {Hydrostatic, quasi-hydrostatic and
495     nonhydrostatic ocean modeling},
496     journal = jgr,
497     volume = {102, C3},
498     pages = {5,753--5,766},
499     }
500    
501     @Article{mars-sha:98,
502     author = {J. Marshall and H. Jones and C. Hill},
503     year = 1998,
504     title = {Efficient ocean modeling using
505     non-hydrostatic algorithms},
506     journal = jms,
507     volume = {18},
508     pages = {115--134},
509     }
510    
511     @Article{mcw:96,
512     author = {J. McWilliams},
513     year = 1996,
514     title = {Modeling the oceanic general circulation},
515     journal = arfm,
516     volume = {28},
517     pages = {215--248},
518     }
519 edhill 1.13
520     %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
521     %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
522     %% (Available from Unidata or in PostScript form by anonymous FTP from
523     %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
524     %% a hypertext version of the User's Guide available at
525     %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
526     %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
527     %% also available.
528    
529     @TechReport{rew:97,
530     author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
531     title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
532     An Interface for Data Access, Version 3},
533     institution = {Unidata Program Center},
534     type = {Report},
535     address = {Boulder, Colorado},
536     year = 1997,
537     note = {http://www.unidata.ucar.edu/packages/netcdf/},
538     }
539    
540    
541 heimbach 1.1 @Article{res-eta:98,
542     author = {J.M. Restrepo and G.K. Leaf and A. Griewank},
543     year = 1998,
544 cnh 1.5 title = {Circumventing storage limitations in variational
545 heimbach 1.1 data assimilation studies},
546     journal = {SIAM J. Sci. Comput.},
547     volume = {19},
548     pages = {1586--1605},
549     }
550    
551     @Article{ros-eta:93,
552     author = {N. Rostaing and S. Dalmas and A. Galligo},
553     year = 1993,
554     title = {Automatic differentiation in Odyss{\'e}e},
555     journal = {Tellus},
556     volume = {45A},
557     pages = {558--568},
558     }
559    
560     @incollection{she-and:89,
561     author = {J. Sheinbaum and D.L.T. Anderson},
562     year = 1989,
563     title = {Assimilation of XBT data using a variational
564     technique},
565     booktitle = {Oceanic circulation models:
566     Combining data and dynamics},
567     pages = {257--285},
568     series = {NATO ASI Series},
569     volume = {C 284},
570     editor = {{D.L.T. Anderson and J. Willebrand}},
571     publisher = {Springer-Verlag},
572     address = {Berlin (Germany)},
573     }
574 cnh 1.6
575     @Article{DaSilva94,
576     author = {A. da Silva and A. C. Young and S. Levitus},
577     year = 1994,
578     title = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
579     journal = {NOAA Atlas NESDIS},
580     volume = {6},
581     publisher = {U.S. Department of Commerce},
582     address = {Washington, D.C. (USA)},
583     note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
584     }
585 heimbach 1.1
586     @techreport{sta-eta:97,
587     author = {D. Stammer and C. Wunsch and R. Giering and
588 cnh 1.6 Q. Zhang and J. Marotzke and J. Marshall and
589 heimbach 1.1 C. Hill},
590     year = 1997,
591     title = {The global ocean circulation estimated from
592     TOPEX/POSEIDON altimetry and a general circulation
593     model},
594     institution = {Center for Global Change Science, Massachusetts
595     Institute of Technology},
596     type = {Technical Report},
597     number = {49},
598     pages = {40 pp.},
599     address = {Cambridge (MA), USA},
600     }
601    
602     @Article{sta-eta:01,
603     author = {D. Stammer and C. Wunsch and R. Giering and
604     C. Eckert and P. Heimbach and J. Marotzke and
605     A. Adcroft and C. Hill and J. Marshall},
606     year = 2001,
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608     estimated from ocean observations and a general
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627     observations with the adjoint vorticity equation.
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648     publisher = {Elsevier},
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650     pages = {629 pp.},
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652    
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656     title = {Three lectures on fitting numerical models to
657     observations},
658     institution = {GKSS},
659     type = {Report},
660     number = {87/E/65},
661     pages = {64 pp.},
662     address = {Geesthacht (D)},
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665     @Article{tha-lon:88,
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667     year = 1988,
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670     volume = {93, C2},
671     pages = {1,227--1,240},
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675     author = {W.C. Thacker},
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677     title = {Fitting models to inadequate data by enforcing
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680     volume = {93},
681     pages = {10,655--10,665},
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698     of oceanic inverse problems},
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702     }
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707     title = {An optimal control / adjoint equation approach
708     to studying the ocean general circulation},
709     journal = jpo,
710     volume = {19},
711     pages = {1471--1485},
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718     title = {Oceanic data analysis using a general circulation
719     model. I: Simulations},
720     journal = jpo,
721     volume = {22},
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723     }
724    
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726     author = {E. Tziperman and W.C. Thacker and R.B. Long and
727     S. Hwang and S.R. Rintoul},
728     year = {1992b},
729     title = {Oceanic data analysis using a general circulation
730     model. I: A North Atlantic model},
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738     title = {The ocean circulation inverse problem},
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740     publisher = cup,
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751     volume = {57},
752     pages = {305--334},
753     }
754 adcroft 1.2
755    
756     @InCollection{hill:95,
757     author = {Hill, C. and J. Marshall},
758     title = {Application of a Parallel Navier-Stokes Model to
759     Ocean Circulation in Parallel Computational Fluid
760     Dynamics},
761     booktitle = {Implementations and Results Using Parallel
762     Computers},
763     pages = {545-552},
764     publisher = {Elsevier Science B.V.: New York},
765     year = 1995,
766     editor = {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
767     }
768    
769    
770     @Article{marshall:97a,
771 adcroft 1.4 author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
772 adcroft 1.2 title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
773     modeling},
774     journal = {JGR},
775     year = 1997,
776     volume = 102,
777     number = {C3},
778     pages = {5733-5752}
779     }
780    
781     @Article{marshall:97b,
782 cnh 1.10 author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
783 adcroft 1.2 title = {A finite-volume, incompressible Navier Stokes model for
784     studies of the ocean on parallel computers},
785     journal = {JGR},
786     year = 1997,
787     volume = 102,
788     number = {C3},
789     pages = {5753-5766}
790     }
791    
792     @Article{adcroft:97,
793 adcroft 1.4 author = {Adcroft, A.J. and Hill, C.N. and J. Marshall},
794 adcroft 1.2 title = {Representation of topography by shaved cells in a height
795     coordinate ocean model},
796     journal = {MWR},
797     year = 1997,
798     volume = 125,
799     pages = {2293-2315}
800     }
801    
802 jmc 1.19 @Article{adcroft:04a,
803     author = {Adcroft, A. and J.-M. Campin},
804 jmc 1.14 title = {Re-scaled height coordinates for accurate representation
805     of free-surface flows in ocean circulation models},
806     journal = om,
807     year = 2004,
808 jmc 1.19 volume = 7,
809     pages = {269-284}
810     }
811    
812     @Article{adcroft:04b,
813     author = {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall},
814     title = {Implementation of an Atmosphere-Ocean General Circulation Model
815     on the Expanded Spherical Cube},
816     journal = mwr,
817     year = 2004,
818     volume = 132,
819     pages = {2845-2863}
820     }
821    
822     @Article{marshall:04,
823     author = {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White},
824     title = {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms},
825     journal = mwr,
826     year = 2004,
827     volume = 132,
828     pages = {2882-2894}
829 jmc 1.14 }
830    
831 adcroft 1.2 @Article{visbeck:97,
832     author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
833     title = {Specification of eddy transfer coefficients in
834     coarse-resolution ocean circulation models},
835     journal = {JPO},
836     year = 1997,
837     volume = 27,
838     number = 3,
839     pages = {381-402}
840     }
841    
842     @Article{shaw:98,
843     author = {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
844     and Marshall, J.},
845     title = {A comparison of implicitly parallel multi-threaded and
846     data-parallel implementations of an ocean model based
847     on the Navier-Stokes equations},
848     journal = {J. of Parallel and Distributed Computing},
849     year = 1998,
850     volume = 48,
851     number = 1,
852     pages = {1-51}
853     }
854    
855     @Article{marshall:98,
856 cnh 1.10 author = {J. Marshall and H. Jones and C. Hill},
857 adcroft 1.2 title = {Efficient ocean modeling using non-hydrostatic algorithms},
858     journal = {JMR},
859     year = 1998,
860     volume = 18,
861     pages = {115-134}
862     }
863    
864     @Article{mjn:99,
865     author = {Marshall, J., Jamous, D and J. Nilsson},
866     title = {Reconciling `thermodynamic' and `dynamic' methods of
867     computation of water-mass transformation rates},
868     journal = {DSR},
869     year = 1999,
870     volume = 46,
871     pages = {545-572}
872     }
873    
874     @Article{ms:99,
875     author = {Marshall, J and F. Schott},
876     title = {Open ocean deep convection: observations, models and theory},
877     journal = {Rev. Geophys.},
878     year = 1999,
879     volume = 37,
880     number = 1,
881     pages = {1-64}
882     }
883    
884     @Article{adcroft:99,
885     author = {Adcroft, A., Hill C. and J. Marshall},
886     title = {A new treatment of the Coriolis terms in C-grid models
887     at both high and low resolutions},
888     journal = {MWR},
889     year = 1999,
890     volume = 127,
891     pages = {1928-1936}
892     }
893    
894     @InProceedings{hill:99,
895     author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
896     title = {A Strategy for Terascale Climate Modeling},
897 cnh 1.8 booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
898 cnh 1.9 year = 1999,
899     pages = {406-425},
900     publisher = {World Scientific},
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908     volume = 30,
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910     pages = {2481-2503}
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917 jmc 1.14 journal = om,
918 adcroft 1.2 year = 2002,
919     note = {in preparation}
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926 adcroft 1.2 year = 2002,
927     note = {in preparation}
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932     title = {Computational Design of the Basic Dynamical Processes of
933     the UCLA General Circulation Model},
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935     pages = {174-267},
936     publisher = {Academic Press},
937     year = 1977,
938     volume = 17
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945 adcroft 1.2 journal = {Tellus},
946 adcroft 1.3 year = 1998,
947     volume = 50,
948     number = 1,
949     pages = {95-108}
950     }
951    
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953     author = {Adcroft, A.},
954     title = {Numerical Algorithms for use in a Dynamical Model of the
955     Ocean},
956     school = {Imperial College, London},
957     year = 1995
958     }
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963     use in large-scale eddy-permitting ocean models},
964     journal = {MWR},
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966     volume = 128,
967     number = 8,
968     pages = {2935-2946}
969     }
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979     pages = {333-338}
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1017     volume = 29,
1018     number = 8,
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1029     pages = {163-193},
1030     editor = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1031     publisher = {American Mathematical Society},
1032     address = {Providence, RI},
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1096     year = {2003},
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1098     OPTvolume = {},
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1102     OPTnote = {{\textup{In press}}},
1103     OPTannote = {}
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1111     year = 1983,
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1114     pages = {53 pp.}
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1122     YEAR = 1998,
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1124     PAGES = "191-217"
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1127     @ARTICLE{sem76,
1128     AUTHOR = "Semtner, Jr., Albert J.",
1129     TITLE = "A model for the thermodynamic growth of sea ice in
1130     numerical investigations of climate",
1131     JOURNAL = jpo,
1132     YEAR = 1976,
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1136    
1137     @ARTICLE{win00,
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1139     TITLE = "A reformulated three-layer sea ice model",
1140     JOURNAL = jaot,
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1143     PAGES = "525-531"
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1149     JOURNAL = jpo,
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1229     author = {K. Trenberth and J. Olson and W. Large},
1230     title = {A global wind stress climatology based on ECMWF analyses},
1231     institution = {NCAR},
1232     year = {1989},
1233     OPTkey = {},
1234     OPTtype = {},
1235     number = {NCAR/TN-338+STR},
1236     address = {Boulder, CO},
1237     OPTmonth = {},
1238     }
1239    
1240     @Article{Wanninkhof_92,
1241     author = {R. Wanninkhof},
1242     title = {Relationship between wind speed and gas exchange over the ocean},
1243     journal = jgr,
1244     year = {1992},
1245     OPTkey = {},
1246     volume = {97},
1247     OPTnumber = {},
1248     pages = {7373--7382},
1249     OPTmonth = {},
1250     }
1251    
1252 molod 1.22 @incollection{black:77,
1253     author = {A. K. Blackadar},
1254     year = {1977},
1255     title = {High Resolution Models of the Planetary Boundary Layer.},
1256     booktitle = {Advances in Environmental Science and Engineering, Vol 1 } ,
1257     editor = {Pfafflin and Zeigler},
1258     publisher = {Gordon and Breach, Scientific Publishers}
1259     }
1260    
1261     @Article{chou:92,
1262     author = {M-D. Chou},
1263     year = {1992},
1264     title = {A solar radiation model for use in climate studies.},
1265     journal = jas,
1266     volume = {49},
1267     pages = {762-772}
1268     }
1269    
1270     @Article{chou:90,
1271     author = {M-D. Chou},
1272     year = {1990},
1273     title = {Parameterizations for the absorption of solar radiation
1274     by O$_2$ and CO$_2$ with applications to climate studies.},
1275     journal = jclim,
1276     volume = {3},
1277     pages = {209-217}
1278     }
1279    
1280     @techreport{chsz:94,
1281     author = {M.-D. Chou and M.J.Suarez},
1282     year = {1994},
1283     title = {An efficient thermal infrared radiation parameterization
1284     for use in general circulation models},
1285     institution = {National Aeronautics and Space Administration},
1286     type = {NASA Technical Memorandum},
1287     number = {104606-Vol 3},
1288     address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1289     note = {http://www.gmao.nasa.gov/}
1290     }
1291    
1292     @Article{clarke:70,
1293     author = {R. H. Clarke},
1294     year = {1970},
1295     title = {Observational studies in the atmospheric boundary layer.},
1296     journal = qjrms,
1297     volume = {96},
1298     pages = {91-114}
1299     }
1300    
1301     @Article{deftow:94,
1302     author = { R. S. Defries and J. R. G. Townshend},
1303     year = {1994},
1304     title = {NDVI-derived Land Cover Classification at Global Scales. },
1305     journal = {Int'l J. Rem. Sens.} ,
1306     volume = {15},
1307     pages = {3567-3586}
1308     }
1309    
1310     @Article{dorsell:89,
1311     author = { J. L. Dorman and P. J. Sellers},
1312     year = {1989},
1313     title = {A global climatology of albedo, roughness length and stomatal
1314     resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).},
1315     journal = jam,
1316     volume = {28},
1317     pages = {833-855}
1318     }
1319    
1320     @Article{helflab:88,
1321     author = { H. M. Helfand and J. C. Labraga},
1322     year = {1988},
1323     title = { Design of a non-singular level 2.5 second-order closure
1324     model for the prediction of atmospheric turbulence. },
1325     journal = jas,
1326     volume = {45},
1327     pages = {113-132}
1328     }
1329    
1330     @inproceedings{helfetal:91,
1331     author = {H. M. Helfand and M. Fox-Rabinovitz and L. Takacs and A. Molod},
1332     year = {1991},
1333     title = {Simulation of the planetary boundary layer and turbulence in the GLA GCM},
1334     booktitle = {Proceedings of the AMS Ninth Conference on Numerical Weather Predicition},
1335     year = 1991,
1336     pages = {406-425},
1337     publisher = {American Meteorological Society}
1338     }
1339    
1340     @Article{helfschu:95,
1341     author = {H. M. Helfand and S. D. Schubert},
1342     year = {1995},
1343     title = { Climatology of the
1344     Simulated Great Plains Low-Level Jet and Its contribution to the
1345     Continental Moisture Budget of the United States. },
1346     journal = jclim,
1347     volume = {8},
1348     pages = {784-806}
1349     }
1350    
1351     @Article{kondo:75,
1352     author = {J. Kondo},
1353     year = {1975},
1354     title = {Air-sea bulk transfer coefficients in diabatic conditions.},
1355     journal = blm,
1356     volume = {9},
1357     pages = {91-112}
1358     }
1359    
1360     @techreport{ks:91,
1361     author = { Randal D. Koster and Max J. Suarez},
1362     year = {1991},
1363     title = { A Simplified Treatment of SiB's Land Surface Albedo Parameterization.},
1364     institution = {National Aeronautics and Space Administration},
1365     type = {NASA Technical Memorandum},
1366     number = {104538},
1367     address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1368     note = {http://www.gmao.nasa.gov/},
1369     }
1370    
1371     @Article{ks:92,
1372     author = { Randal D. Koster and Max J. Suarez},
1373     year = {1992},
1374     title = { Modeling the Land Surface Boundary
1375     in Climate Models as a Composite of Independent Vegetation Stands.},
1376     journal = jgr,
1377     volume = {97},
1378     pages = {2697-2715}
1379     }
1380    
1381     @Article{lhans:74,
1382     author = {A. A. Lacis and J. E. Hansen},
1383     year = {1974},
1384     title = { A parameterization for the absorption of solar radiation
1385     in the Earth's atmosphere. },
1386     journal = jas,
1387     volume = {31},
1388     pages = {118-133}
1389     }
1390    
1391     @Article{larpond:81,
1392     author = {W. G. Large and S. Pond},
1393     year = {1981},
1394     title = {Open ocean momentum flux measurements in moderate to strong winds.},
1395     journal = jpo,
1396     volume = {11},
1397     pages = {324-336}
1398     }
1399    
1400     @Article{moorsz:92,
1401     author = {S. Moorthi and M. J. Suarez},
1402     year = {1992},
1403     title = { Relaxed Arakawa Schubert: A parameterization of moist
1404     convection for general circulation models.},
1405     journal = mwr,
1406     volume = {120},
1407     pages = {978-1002}
1408     }
1409    
1410     @incollection{pano:73,
1411     author = {H. A. Panofsky},
1412     year = {1973},
1413     title = {Tower Micrometeorology. },
1414     booktitle = {Workshop on Micrometeorology},
1415     editor = {D. A. Haugen},
1416     publisher = {American Meteorological Society}
1417     }
1418    
1419     @Article{reynetal:94,
1420     author = {R. W. Reynolds and T. M. Smith},
1421     year = {1994},
1422     title = {Improved global sea surface temperature analyses using optimum interpolation.},
1423     journal = jclim,
1424     volume = {7},
1425     pages = {929-948}
1426     }
1427    
1428     @Article{rosen:87,
1429     author = {J. E. Rosenfield and M. R. Schoeberl and M. A. Geller},
1430     year = {1987},
1431     title = { A computation of the stratospheric
1432     diabatic circulation using an accurate radiative transfer model},
1433     journal = jas,
1434     volume = {44},
1435     pages = {859-876}
1436     }
1437    
1438     @Article{sudm:88,
1439     author = {Y. C. Sud and A. Molod},
1440     year = {1988},
1441     title = { The roles of dry convection, cloud-radiation feedback processes
1442     and the influence of recent improvements in the parameterization of convection in the GLA GCM. },
1443     journal = mwr,
1444     volume = {116},
1445     pages = {2366-2387}
1446     }
1447    
1448     @techreport{taksz:96,
1449     author = {L. L. Takacs and M.J. Suarez},
1450     year = {1996},
1451     title = { Dynamical aspects of climate simulations Using the GEOS
1452     General Circulation Model},
1453     institution = {National Aeronautics and Space Administration},
1454     type = {NASA Technical Memorandum},
1455     number = {104606 Volume 10},
1456     address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA},
1457     note = {http://www.gmao.nasa.gov/},
1458     }
1459    
1460     @Article{yagkad:74,
1461     author = {A. M. Yaglom and B. A. Kader},
1462     year = {1974},
1463     title = {Heat and mass transfer between a rough wall and
1464     turbulent fluid flow at high Reynolds and Peclet numbers. },
1465     journal = jfm,
1466     volume = {62},
1467     pages = {601-623}
1468     }
1469    
1470     @Article{yam:77,
1471     author = {T. Yamada},
1472     year = {1977},
1473     title = { A numerical experiment on pollutant dispersion in a horizontally-homogenious
1474     atmospheric boundary layer.},
1475     journal = {Atmos. Environ.},
1476     volume = {11},
1477     pages = {1015-1024}
1478     }
1479    
1480     @Article{zhouetal:95,
1481     author = {J. Zhou and Y.C. Sud and K.-M. Lau},
1482     year = {1995},
1483     title = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM},
1484     journal = qjrms,
1485     volume = {122},
1486     pages = {903-927}
1487     }
1488 molod 1.23
1489     @Article{breth:99,
1490     author = {C. S. Bretherton and M.K. MacVean and P. Bechtold and A. Chlond
1491     and W.R. Cotton and J. Cuxart and H. Cuijpers and M. Khairoutdinov
1492     and B. Kosovic and D. Lewellen and C-H. Moeng and P. Siebesma and
1493     B. Stevens and D.E. Stevens and I. Sykes and M.C. Wyant},
1494     year = 1999,
1495     title = {An intercomparison of radiatively driven entrainment and turbulence
1496     in a smoke cloud, as simulated by different numerical models.},
1497     journal = qjrms,
1498     volume = {125},
1499     pages = {391-423}
1500     }
1501    
1502     @Article{bm:99,
1503     author = {A. C. Bushell and G.M. Martin},
1504     year = 1999,
1505     title = {The Impact of Vertical Resolution Upon GCM Simulations of Marine Stratocumulus.},
1506     journal = {Climate Dyn.},
1507     volume = {15},
1508     pages = {293-318}
1509     }
1510    
1511     @Article{Inn:01,
1512     author = {P. M. Inness and S.J. Slingo and R.B. Woolnough and B. Neale and V.D. Pope},
1513     year = 2001,
1514     title = {Organization of Tropical Convection in a GCM with Verying Vertical Resolution;
1515     Implications for the Simulation of the Madden-Julian Oscillation.},
1516     journal = {Climate Dyn.},
1517     volume = {17},
1518     pages = {777-794}
1519     }
1520    
1521     @Article{kal:89,
1522     author = {E. Kalnay and M. Kanamitsu and J. Pfaendtner and J. Sela and M. Suarez and
1523     J. Stackpole and J. Tucillo and L. Umscheid and and D. Williamson},
1524     year = 1989,
1525     title = {Rules for Interchange of Physical Parameterizations.},
1526     journal = bams,
1527     volume = {70},
1528     pages = {620-622}
1529     }
1530    
1531     @Article{wo:98,
1532     author = {D. Williamson and J.G. Olsen},
1533     year = 1998,
1534     title = {A Comparison of Semi-Langrangian and Eulerian Polar Climate Simulations.},
1535     journal = mwr,
1536     volume = {126},
1537     pages = {991-1000}
1538     }

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