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1 heimbach 1.1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
2     @string{bams = {Bull.~Am.~Met.~Soc.}}
3     @string{blm = {Bound.~Layer~Meteorol.}}
4 jmc 1.14 @string{climd = {Clim.~Dynamics}}
5 heimbach 1.1 @string{jgr = {J.~Geophys.~Res.}}
6     @string{ijrs = {Int.~J.~Remote Sensing}}
7     @string{jas = {J.~Atmos.~Sci.}}
8     @string{jpo = {J.~Phys.~Oceanogr.}}
9     @string{jclim = {J.~Clim.}}
10     @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
11     @string{jfm = {J.~Fluid Mech.}}
12     @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
13     @string{jms = {J.~Mar.~Sys.}}
14 jmc 1.14 @string{om = {Ocean Modelling}}
15 heimbach 1.1 @string{gaos = {Global Atmos.~Ocean System}}
16     @string{grl = {Geophys.~Res.~Lett.}}
17     @string{dsr = {Deep Sea Res.}}
18     @string{dao = {Dyn.~Atmos.~Oceans}}
19     @string{mwr = {Mon.~Wea.~Rev.}}
20     @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
21     @string{tel = {Tellus}}
22     @string{cup = {Cambridge University Press}}
23     @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
24     @string{ifremer = {IFREMER/CERSAT}}
25     @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
26     @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
27     @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
28     @string{mpi = {MPI f\"ur Meteorologie}}
29     @string{ecmwf = {ECMWF}}
30     @string{estec = {European Space Research and Technology Centre
31     (ESTEC)}}
32     @string{esa = {European Space Agency (ESA)}}
33    
34     @Article{bis-eta:92,
35     author = {C.H. Bishof and G.F. Corliss and L. Green and
36     A. Griewank and K. Haigler and P. Newman},
37     year = 1992,
38     title = {Automatic differentiation of advanced GFD codes
39     for multidisciplinary design},
40     journal = {Journal on Computing Systems in Engineering},
41     volume = {3},
42     pages = {625--638},
43     }
44    
45     @incollection{bis:94,
46     author = {C.H. Bishof},
47     year = 1994,
48     title = {Automatic differentiation, tangent linear models
49     and pseudo-adjoints},
50     booktitle = {High Performance Computing in the Geosciences},
51     series = {Series C: Mathematical and Physical Sciences},
52     pages = {59--80},
53     editor = {F.X. {Le Dimet}},
54     publisher = {Kluwer},
55     address = {Dordrecht, NL},
56     }
57    
58     @techreport{bis-eta:94,
59     author = {C. Bishof and A. Carle and P. Khademi and
60     A. Maurer},
61     year = 1994,
62     title = {The ADIFOR 2.0 system for the automatic
63     differentiation of FORTRAN 77 programs},
64     institution = {Argonne National Laboratory, Mathematics and
65     Computer Science Division},
66     type = {Argonne Preprint},
67     number = {ANL-MCS-P981-1194},
68     address = {ANL; 9700 South Cass Ave.;
69     Argonne (ILL), 90439; USA},
70     note = {http://www.mcs.anl.gov/autodiff/},
71     }
72    
73     @techreport{bis-roh:97,
74     author = {C. Bishof and L. Roh},
75     year = 1997,
76     title = {ADIC: An extensible automatic differentiation tool
77     for ANSI-C},
78     institution = {Argonne National Laboratory, Mathematics and
79     Computer Science Division},
80     type = {Argonne Preprint},
81     number = {ANL-MCS-P626-1196},
82     address = {ANL; 9700 South Cass Ave.;
83     Argonne (ILL), 90439; USA},
84     note = {http://www.mcs.anl.gov/autodiff/},
85     }
86    
87     @Article{cou-tal:87,
88     author = {P. Courtier and O. Talagrand},
89     year = 1987,
90     title = {Variational assimilation of meteorological
91     observations with the adjoint vorticity equation.
92     II: Numerical results},
93     journal = qjrms,
94     volume = {113},
95     pages = {1329--1347},
96     }
97    
98     @Article{cou-tal:90,
99     author = {P. Courtier and O. Talagrand},
100     year = 1990,
101     title = {Variational assimilation of meteorological
102     observations with direct and adjoint shallow-water
103     equations},
104     journal = tel,
105     volume = {42A},
106     pages = {531--549},
107     }
108    
109     @Article{cou-eta:94,
110     author = {P. Courtier and J.-N. Th{\'e}paut and
111     A. Hollingsworth},
112     year = 1994,
113     title = {A strategy for operational implementation of
114     4-D-VAR using an incremental approach},
115     journal = qjrms,
116     volume = {120},
117     pages = {1367--1387},
118     }
119    
120     @Article{err:97,
121     author = {R.M. Errico},
122     year = 1997,
123     title = {What is an adjoint model},
124     journal = bams,
125     volume = {78},
126     pages = {2577--2591},
127     }
128    
129     @Article{far-moo:92,
130     author = {B.F. Farrell and A.M. Moore},
131     year = {1992},
132     title = {An adjoint method for obtaining the most rapidly
133     growing perturbation to oceanic flows},
134     journal = jpo,
135     volume = {22},
136     pages = {338--349},
137     }
138    
139     @Article{far-ioa:96a,
140     author = {B.F. Farrell and P. Ioannou},
141     year = {1996a},
142     title = {Generalized stability theory. Part I:
143     Autonomous operators},
144     journal = jas,
145     volume = {53},
146     pages = {2025--2040},
147     }
148    
149     @Article{far-ioa:96b,
150     author = {B.F. Farrell and P. Ioannou},
151     year = {1996b},
152     title = {Generalized stability theory. Part I:
153     Nonautonomous operators},
154     journal = jas,
155     volume = {53},
156     pages = {2041--2053},
157     }
158    
159     @techreport{fau-pap:98,
160     author = {C. Faure and Y. Papegay},
161     year = 1998,
162     title = {Odyss{\'e}e User's Guide. Version 1.7},
163     institution = {Institut National de Recherche en Informatique
164     et en Automatique},
165     type = {Rapport Technique},
166     number = {0224},
167     address = {INRIA; 2004, route des Luciolis, B.P. 93;
168     06902 Sophia Antipolis Cedex; France},
169     note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
170     }
171    
172     @Article{fau:00,
173     author = {C. Faure},
174     year = {2000},
175     title = {Adjoining strategies for multi-layered programs},
176     journal = {Optimisation Methods and Software},
177     note = {in press},
178     }
179    
180     @Article{gen-mcw:90,
181     author = {P.R. Gent and J.C. McWilliams},
182     year = 1990,
183     title = {Isopycnal mixing in ocean circulation models},
184     journal = jpo,
185     volume = {20},
186     pages = {150--155},
187     }
188    
189     @Article{gen-eta:95,
190     author = {P.R. Gent and J. Willebrand and T.J. McDougall
191     and J.C. McWilliams},
192     year = 1995,
193     title = {Parameterizing eddy-induced tracer transports in
194     ocean circulation models},
195     journal = jpo,
196     volume = {25},
197     pages = {463--474},
198     }
199    
200     @Article{gie-kam:98,
201     author = {R. Giering and T. Kaminski},
202     year = 1998,
203     title = {Recipes for adjoint code construction},
204     journal = {ACM Transactions on Mathematical Software},
205     volume = 24,
206     pages = {437--474},
207     }
208    
209     @techreport{gie:99,
210     author = {R. Giering},
211     year = 1999,
212     title = {Tangent linear and Adjoint Model Compiler.
213     Users manual 1.4 (TAMC Version 5.2)},
214     institution = {Massachusetts Institute of Technology},
215     type = {Report},
216     number = {~},
217     address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
218     02139; USA},
219     note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
220     }
221    
222     @incollection{gie:00,
223     author = {R. Giering},
224     editor = {P. Kasibhatla and M. Heimann and P. Rayner and
225     N. Mahowald and R.G. Prinn and D.E. Hartley},
226     year = 2000,
227     booktitle = {Inverse methods in global biogeochemical cycles},
228     title = {Tangent linear and adjoint biogeochemical models},
229     publisher = {American Geophysical Union},
230     series = {Geophysical Monograph},
231     volume = {114},
232     address = {Washington, DC},
233     pages = {33--48},
234     }
235    
236     @Article{gil-lem:89,
237     author = {J.C. Gilbert and C. Lemar\'echal},
238     year = 1989,
239     title = {Some numerical experiments with variable-storage
240     quasi-Newton algorithms},
241     journal = {Math. Programming},
242     volume = {45},
243     pages = {407--435},
244     }
245    
246     @book{gil-eta:81,
247     author = {P.E. Gill and W. Murray and M.H. Wright},
248     title = {Practical optimization},
249     year = 1981,
250     publisher = {Academic Press},
251     address = {London},
252     pages = {401 pp.},
253     }
254    
255 heimbach 1.11 @incollection{gri:89,
256     author = {A. Griewank},
257     year = 1989,
258     title = {On automatic differentiation},
259     booktitle = {Mathematical Programming: Recent Developments and
260     Applications},
261     pages = {83--108},
262     editor = {M. Iri and K. Tanabe},
263     publisher = {Kluwer},
264     address = {Dordrecht, NL},
265     }
266    
267     @Article{gri:92,
268     author = {A.~Griewank},
269     title = {Achieving logarithmic growth of temporal and spatial
270     complexity in reverse {A}utomatic {D}ifferentiation},
271     journal = {Optimization Methods and Software},
272     year = {1992},
273     volume = {1},
274     pages = {35--54}
275     }
276    
277 heimbach 1.1 @book{gri:00,
278     author = {A. Griewank},
279     title = {Evaluating Derivatives. Principles and Techniques
280     of Algorithmic Differentiation},
281     year = 2000,
282     series = {Frontiers in Applied Mathematics},
283     volume = {19},
284     publisher = {SIAM},
285     address = {Philadelphia},
286     pages = {369 pp.},
287     }
288    
289     @Article{hal-eta:82,
290     author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
291     year = 1982,
292     title = {Sensitivity analysis of a radiative-convective
293     model by the adjoint method},
294     journal = jas,
295     volume = {39},
296     pages = {2038--3050},
297     }
298 cnh 1.6
299     @Article{Haney,
300     author = {R.L. Haney},
301     title = {Surface thermal boundary conditions for ocean
302     circulation models},
303     journal = jpo,
304     year = 1971,
305     volume = 1,
306     pages = {241--248}
307     }
308 heimbach 1.1
309 cnh 1.16 @Article{held-suar:94,
310     author = {I.M. Held and M.J. Suarez},
311     year = {1994},
312     title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models},
313     journal = {Bulletin of the American Meteorological Society},
314     volume = {75(10)},
315     pages = {1825-1830}
316     }
317    
318 heimbach 1.1 @Article{hil-eta:01,
319     author = {C. Hill and M. Follows and V. Bugnion and
320     J. Marshall},
321 cnh 1.10 year = {2002},
322 heimbach 1.1 title = {Spatial and Temporal Impacts of ocean general
323     circulation on carbon sequestration},
324 cnh 1.6 journal = {Global Biogeochemical Cycles},
325 heimbach 1.1 note = {submitted},
326     }
327 cnh 1.6
328 edhill 1.15 @ARTICLE{hib80,
329     AUTHOR = "W. D. {Hibler, III}",
330     TITLE = "Modeling a Variable Thickness Sea Ice Cover",
331     JOURNAL = mwr,
332     YEAR = 1980,
333     VOLUME = 1,
334     PAGES = "1943-1973"
335     }
336    
337 cnh 1.6 @Article{Holland75,
338     author = {W.R. Holland and L. B. Lin},
339     year = {1975a},
340     title = {On the origin of mesoscale eddies and their contribution
341     to the general circulation of the ocean. I. A preliminary
342     numerical experiment},
343     journal = jpo,
344     volume = {5},
345     pages = {642-657}
346     }
347    
348     @Article{hol-lin:75b,
349     author = {W.R. Holland and L. B. Lin},
350     year = {1975b},
351     title = {On the origin of mesoscale eddies and their contribution
352     to the general circulation of the ocean. II. A parameter
353     study},
354     journal = jpo,
355     volume = {5},
356     pages = {658-669}
357     }
358    
359 heimbach 1.1 @book{kas-eta:00,
360     author = {P. Kasibhatla and M. Heimann and P. Rayner and
361     N. Mahowald and R.G. Prinn and D.E. Hartley},
362     year = 2000,
363     title = {Inverse methods in global biogeochemical cycles},
364     publisher = {American Geophysical Union},
365     series = {Geophysical Monograph},
366     volume = {114},
367     address = {Washington, DC},
368     pages = {324 pp.},
369     }
370    
371     @Article{lar-eta:94,
372     author = {W.G. Large and J.C. McWilliams and S.C. Doney},
373     year = 1994,
374     title = {Oceanic vertical mixing: A review and a model
375     with nonlocal boundary layer parameterization},
376     journal = {Rev.~Geophys.},
377     volume = {32},
378     pages = {363--403},
379     }
380    
381     @Article{lar-eta:97,
382     author = {W.G. Large and G. Danabasoglu and S.C. Doney
383     and J.C. McWilliams},
384     year = 1997,
385     title = {Sensitivity to surface forcing and boundary layer
386     mixing in a global ocean model: annual-mean
387     climatology},
388     journal = jpo,
389     volume = {27},
390     pages = {2418--2447},
391     }
392    
393     @Article{led-tal:86,
394     author = {F.-X. {Le Dimet} and O. Talagrand},
395     year = 1986,
396     title = {Variational algorithms for analysis and
397     assimilation of meteorological observations:
398     theoretical aspects},
399     journal = tel,
400     volume = {38A},
401     pages = {97--110},
402     }
403 cnh 1.6
404     @TechReport{lev:94a,
405     author = {S. Levitus and T.P.Boyer},
406     title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
407     institution = {NOAA Atlas NESDIS 3},
408     year = 1994,
409     OPTkey = {},
410     OPTtype = {},
411     OPTnumber = {},
412     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
413     OPTmonth = {},
414     OPTnote = {},
415     OPTannote = {}
416     }
417    
418    
419     @TechReport{Levitus94,
420     author = {S. Levitus and T.P.Boyer},
421     title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
422     institution = {NOAA Atlas NESDIS 4},
423     year = 1994,
424     OPTkey = {},
425     OPTtype = {},
426     OPTnumber = {},
427     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
428     OPTmonth = {},
429     OPTnote = {},
430     OPTannote = {}
431     }
432    
433 heimbach 1.1
434     @Article{lew-der:85,
435     author = {J. Lewis and J. Derber},
436     year = {1985},
437     title = {The use of adjoint equations to solve a variational
438     adjustment problem with advective constraints},
439     journal = {Tellus},
440     volume = {37A},
441     pages = {309--322},
442     }
443    
444     @techreport{lon:88,
445     author = {R.B. Long},
446     year = 1988,
447     title = {Notes on assimilating observations into
448     numerical models},
449     institution = {Delft Hydraulics},
450     type = {Report},
451     number = {~},
452     pages = {38 pp.},
453     address = {Delft (NL)},
454     }
455    
456     @Article{maro-wun:93,
457     author = {J. Marotzke and C. Wunsch},
458     year = 1993,
459     title = {Finding the steady state of a general circulation
460     model through data assimilation:
461     Application to the North Atlantic Ocean},
462     journal = jgr,
463     volume = {98, C11},
464     pages = {20,149--20,167},
465     }
466    
467     @Article{maro-eta:99,
468     author = {J. Marotzke and R. Giering and K.Q. Zhang and
469     D. Stammer and C. Hill and T. Lee},
470     year = 1999,
471     title = {Construction of the adjoint MIT ocean general
472     circulation model and application to Atlantic heat
473     transport variability},
474     journal = jgr,
475     volume = {104, C12},
476     pages = {29,529--29,547},
477     }
478    
479     @Article{mars-eta:97a,
480     author = {J. Marshall and C. Hill and L. Perelman and
481     A. Adcroft},
482     year = {1997a},
483     title = {Hydrostatic, quasi-hydrostatic and
484     nonhydrostatic ocean modeling},
485     journal = jgr,
486     volume = {102, C3},
487     pages = {5,733--5,752},
488     }
489    
490     @Article{mars-eta:97b,
491     author = {J. Marshall and A. Adcroft and C. Hill and
492     L. Perelman and C. Heisey},
493     year = {1997b},
494     title = {Hydrostatic, quasi-hydrostatic and
495     nonhydrostatic ocean modeling},
496     journal = jgr,
497     volume = {102, C3},
498     pages = {5,753--5,766},
499     }
500    
501     @Article{mars-sha:98,
502     author = {J. Marshall and H. Jones and C. Hill},
503     year = 1998,
504     title = {Efficient ocean modeling using
505     non-hydrostatic algorithms},
506     journal = jms,
507     volume = {18},
508     pages = {115--134},
509     }
510    
511     @Article{mcw:96,
512     author = {J. McWilliams},
513     year = 1996,
514     title = {Modeling the oceanic general circulation},
515     journal = arfm,
516     volume = {28},
517     pages = {215--248},
518     }
519 edhill 1.13
520     %% Rew, R. K., G. P. Davis, S. Emmerson, and H. Davies
521     %% NetCDF User's Guide for C, An Interface for Data Access, Version 3, April 1997.
522     %% (Available from Unidata or in PostScript form by anonymous FTP from
523     %% ftp://ftp.unidata.ucar.edu/pub/netcdf/guidec.ps.Z). There is also
524     %% a hypertext version of the User's Guide available at
525     %% http://www.unidata.ucar.edu/packages/netcdf/guidec. NetCDF User's
526     %% Guide for Fortran 90 and NetCDF User's Guide for Fortran 77 are
527     %% also available.
528    
529     @TechReport{rew:97,
530     author = {R. K. Rew and G. P. Davis and S. Emmerson and H. Davies},
531     title = {{NetCDF User's Guide for C, FORTRAN 77, and FORTRAN 90},
532     An Interface for Data Access, Version 3},
533     institution = {Unidata Program Center},
534     type = {Report},
535     address = {Boulder, Colorado},
536     year = 1997,
537     note = {http://www.unidata.ucar.edu/packages/netcdf/},
538     }
539    
540    
541 heimbach 1.1 @Article{res-eta:98,
542     author = {J.M. Restrepo and G.K. Leaf and A. Griewank},
543     year = 1998,
544 cnh 1.5 title = {Circumventing storage limitations in variational
545 heimbach 1.1 data assimilation studies},
546     journal = {SIAM J. Sci. Comput.},
547     volume = {19},
548     pages = {1586--1605},
549     }
550    
551     @Article{ros-eta:93,
552     author = {N. Rostaing and S. Dalmas and A. Galligo},
553     year = 1993,
554     title = {Automatic differentiation in Odyss{\'e}e},
555     journal = {Tellus},
556     volume = {45A},
557     pages = {558--568},
558     }
559    
560     @incollection{she-and:89,
561     author = {J. Sheinbaum and D.L.T. Anderson},
562     year = 1989,
563     title = {Assimilation of XBT data using a variational
564     technique},
565     booktitle = {Oceanic circulation models:
566     Combining data and dynamics},
567     pages = {257--285},
568     series = {NATO ASI Series},
569     volume = {C 284},
570     editor = {{D.L.T. Anderson and J. Willebrand}},
571     publisher = {Springer-Verlag},
572     address = {Berlin (Germany)},
573     }
574 cnh 1.6
575     @Article{DaSilva94,
576     author = {A. da Silva and A. C. Young and S. Levitus},
577     year = 1994,
578     title = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
579     journal = {NOAA Atlas NESDIS},
580     volume = {6},
581     publisher = {U.S. Department of Commerce},
582     address = {Washington, D.C. (USA)},
583     note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
584     }
585 heimbach 1.1
586     @techreport{sta-eta:97,
587     author = {D. Stammer and C. Wunsch and R. Giering and
588 cnh 1.6 Q. Zhang and J. Marotzke and J. Marshall and
589 heimbach 1.1 C. Hill},
590     year = 1997,
591     title = {The global ocean circulation estimated from
592     TOPEX/POSEIDON altimetry and a general circulation
593     model},
594     institution = {Center for Global Change Science, Massachusetts
595     Institute of Technology},
596     type = {Technical Report},
597     number = {49},
598     pages = {40 pp.},
599     address = {Cambridge (MA), USA},
600     }
601    
602     @Article{sta-eta:01,
603     author = {D. Stammer and C. Wunsch and R. Giering and
604     C. Eckert and P. Heimbach and J. Marotzke and
605     A. Adcroft and C. Hill and J. Marshall},
606     year = 2001,
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620     pages = {206},
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629     journal = qjrms,
630     volume = {113},
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637     title = {Assimilation of observations, an introduction},
638     journal = {J.~Meteor.~Soc.~Japan},
639     volume = {75},
640     pages = {191--209},
641     }
642    
643     @book{tar:87,
644     author = {A. Tarantola},
645     title = {Inverse Problem Theory: Methods for data fitting
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647     year = 1987,
648     publisher = {Elsevier},
649     address = {Amsterdam},
650     pages = {629 pp.},
651     }
652    
653     @techreport{tha:87,
654     author = {W.C. Thacker},
655     year = 1987,
656     title = {Three lectures on fitting numerical models to
657     observations},
658     institution = {GKSS},
659     type = {Report},
660     number = {87/E/65},
661     pages = {64 pp.},
662     address = {Geesthacht (D)},
663     }
664    
665     @Article{tha-lon:88,
666     author = {W.C. Thacker and R.B. Long},
667     year = 1988,
668     title = {Fitting dynamics to data},
669     journal = jgr,
670     volume = {93, C2},
671     pages = {1,227--1,240},
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674     @Article{tha:88,
675     author = {W.C. Thacker},
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677     title = {Fitting models to inadequate data by enforcing
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679     journal = jgr,
680     volume = {93},
681     pages = {10,655--10,665},
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685     author = {W.C. Thacker},
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688     to measurements},
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690     volume = {94, C5},
691     pages = {6,177--6,196},
692     }
693    
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695     author = {W.C. Thacker and R. Raghunath},
696     year = 1994,
697     title = {The rigid lid's contribution to the ill-conditioning
698     of oceanic inverse problems},
699     journal = jgr,
700     volume = {99, C5},
701     pages = {10,131--10,141},
702     }
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705     author = {E. Tziperman and W.C. Thacker},
706     year = {1989},
707     title = {An optimal control / adjoint equation approach
708     to studying the ocean general circulation},
709     journal = jpo,
710     volume = {19},
711     pages = {1471--1485},
712     }
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717     year = {1992a},
718     title = {Oceanic data analysis using a general circulation
719     model. I: Simulations},
720     journal = jpo,
721     volume = {22},
722     pages = {1434--1457},
723     }
724    
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726     author = {E. Tziperman and W.C. Thacker and R.B. Long and
727     S. Hwang and S.R. Rintoul},
728     year = {1992b},
729     title = {Oceanic data analysis using a general circulation
730     model. I: A North Atlantic model},
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732     volume = {22},
733     pages = {1458--1485},
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737     author = {C. Wunsch},
738     title = {The ocean circulation inverse problem},
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740     publisher = cup,
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742     pages = {442 pp.},
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751     volume = {57},
752     pages = {305--334},
753     }
754 adcroft 1.2
755    
756     @InCollection{hill:95,
757     author = {Hill, C. and J. Marshall},
758     title = {Application of a Parallel Navier-Stokes Model to
759     Ocean Circulation in Parallel Computational Fluid
760     Dynamics},
761     booktitle = {Implementations and Results Using Parallel
762     Computers},
763     pages = {545-552},
764     publisher = {Elsevier Science B.V.: New York},
765     year = 1995,
766     editor = {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
767     }
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771 adcroft 1.4 author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
772 adcroft 1.2 title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
773     modeling},
774     journal = {JGR},
775     year = 1997,
776     volume = 102,
777     number = {C3},
778     pages = {5733-5752}
779     }
780    
781     @Article{marshall:97b,
782 cnh 1.10 author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
783 adcroft 1.2 title = {A finite-volume, incompressible Navier Stokes model for
784     studies of the ocean on parallel computers},
785     journal = {JGR},
786     year = 1997,
787     volume = 102,
788     number = {C3},
789     pages = {5753-5766}
790     }
791    
792     @Article{adcroft:97,
793 adcroft 1.4 author = {Adcroft, A.J. and Hill, C.N. and J. Marshall},
794 adcroft 1.2 title = {Representation of topography by shaved cells in a height
795     coordinate ocean model},
796     journal = {MWR},
797     year = 1997,
798     volume = 125,
799     pages = {2293-2315}
800     }
801    
802 jmc 1.14 @Article{adcroft:04,
803     author = {Adcroft, A.J. and J.-M. Campin},
804     title = {Re-scaled height coordinates for accurate representation
805     of free-surface flows in ocean circulation models},
806     journal = om,
807     year = 2004,
808     note = {in press}
809     }
810    
811 adcroft 1.2 @Article{visbeck:97,
812     author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
813     title = {Specification of eddy transfer coefficients in
814     coarse-resolution ocean circulation models},
815     journal = {JPO},
816     year = 1997,
817     volume = 27,
818     number = 3,
819     pages = {381-402}
820     }
821    
822     @Article{shaw:98,
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824     and Marshall, J.},
825     title = {A comparison of implicitly parallel multi-threaded and
826     data-parallel implementations of an ocean model based
827     on the Navier-Stokes equations},
828     journal = {J. of Parallel and Distributed Computing},
829     year = 1998,
830     volume = 48,
831     number = 1,
832     pages = {1-51}
833     }
834    
835     @Article{marshall:98,
836 cnh 1.10 author = {J. Marshall and H. Jones and C. Hill},
837 adcroft 1.2 title = {Efficient ocean modeling using non-hydrostatic algorithms},
838     journal = {JMR},
839     year = 1998,
840     volume = 18,
841     pages = {115-134}
842     }
843    
844     @Article{mjn:99,
845     author = {Marshall, J., Jamous, D and J. Nilsson},
846     title = {Reconciling `thermodynamic' and `dynamic' methods of
847     computation of water-mass transformation rates},
848     journal = {DSR},
849     year = 1999,
850     volume = 46,
851     pages = {545-572}
852     }
853    
854     @Article{ms:99,
855     author = {Marshall, J and F. Schott},
856     title = {Open ocean deep convection: observations, models and theory},
857     journal = {Rev. Geophys.},
858     year = 1999,
859     volume = 37,
860     number = 1,
861     pages = {1-64}
862     }
863    
864     @Article{adcroft:99,
865     author = {Adcroft, A., Hill C. and J. Marshall},
866     title = {A new treatment of the Coriolis terms in C-grid models
867     at both high and low resolutions},
868     journal = {MWR},
869     year = 1999,
870     volume = 127,
871     pages = {1928-1936}
872     }
873    
874     @InProceedings{hill:99,
875     author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
876     title = {A Strategy for Terascale Climate Modeling},
877 cnh 1.8 booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
878 cnh 1.9 year = 1999,
879     pages = {406-425},
880     publisher = {World Scientific},
881 adcroft 1.2 }
882    
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884     author = {Wardle R. and Marshall J.},
885     title = {Representation of eddies in primitive equation models by a PV flux},
886     journal = {JPO},
887     year = 2000,
888     volume = 30,
889     number = 10,
890     pages = {2481-2503}
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898 adcroft 1.2 year = 2002,
899     note = {in preparation}
900     }
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905 jmc 1.14 journal = om,
906 adcroft 1.2 year = 2002,
907     note = {in preparation}
908     }
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912     title = {Computational Design of the Basic Dynamical Processes of
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914     booktitle = {Methods in Computational Physics},
915     pages = {174-267},
916     publisher = {Academic Press},
917     year = 1977,
918     volume = 17
919     }
920    
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923 adcroft 1.3 title = {How slippery are piecewise-constant coastlines in numerical
924     ocean models?},
925 adcroft 1.2 journal = {Tellus},
926 adcroft 1.3 year = 1998,
927     volume = 50,
928     number = 1,
929     pages = {95-108}
930     }
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933     author = {Adcroft, A.},
934     title = {Numerical Algorithms for use in a Dynamical Model of the
935     Ocean},
936     school = {Imperial College, London},
937     year = 1995
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944     journal = {MWR},
945     year = 2000,
946     volume = 128,
947     number = 8,
948     pages = {2935-2946}
949     }
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953     title = {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
954     FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
955     journal = {JCP},
956     year = 1993,
957     volume = 105,
958     number = 2,
959     pages = {333-338}
960     }
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963 jmc 1.14 author = {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall},
964 adcroft 1.3 title = {Conservation of properties in a free-surface model},
965 jmc 1.14 journal = om,
966     year = 2004,
967     volume = 6,
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975     year = 1995,
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977     number = 12,
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996     year = 1999,
997     volume = 29,
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999     pages = {1682-1700}
1000     }
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1009     pages = {163-193},
1010     editor = {B.E. Engquist and S. Osher and R.C.J. Somerville},
1011     publisher = {American Mathematical Society},
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1053     journal = jpo,
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1081     OPTpages = {},
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1088     author = "Fofonoff, P. and Millard, Jr., R.C.",
1089     title = "Algorithms for Computation of Fundamental Properties
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1095     pages = {53 pp.}
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1103     YEAR = 1998,
1104     VOLUME = 28,
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1106     }
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1108     @ARTICLE{sem76,
1109     AUTHOR = "Semtner, Jr., Albert J.",
1110     TITLE = "A model for the thermodynamic growth of sea ice in
1111     numerical investigations of climate",
1112     JOURNAL = jpo,
1113     YEAR = 1976,
1114     VOLUME = 6,
1115     PAGES = "379-389"
1116     }
1117    
1118     @ARTICLE{win00,
1119     AUTHOR = "M. Winton",
1120     TITLE = "A reformulated three-layer sea ice model",
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1122     YEAR = 2000,
1123     VOLUME = 17,
1124     PAGES = "525-531"
1125     }
1126    
1127     @ARTICLE{hib79,
1128     AUTHOR = "W. D. {Hibler, III}",
1129     TITLE = "A Dynamic Thermodynamic Sea Ice Model",
1130     JOURNAL = jpo,
1131     YEAR = 1979,
1132     VOLUME = 9,
1133     PAGES = "815-846"
1134     }
1135    
1136     @ARTICLE{fla92,
1137     AUTHOR = "G. M. Flato and W. D. {Hibler, III}",
1138     TITLE = "Modeling pack ice as a cavitating fluid",
1139     JOURNAL = jpo,
1140     YEAR = 1992,
1141     VOLUME = 22,
1142     PAGES = "626-651"
1143     }
1144    
1145     @ARTICLE{hun97,
1146     AUTHOR = "E. C. Hunke and J. K. Dukowicz",
1147     TITLE = "An elastic-viscous-plastic model for sea ice dynamics",
1148     JOURNAL = jpo,
1149     YEAR = 1997,
1150     VOLUME = 27,
1151     PAGES = "1849-1867"
1152     }
1153    
1154     @ARTICLE{zha00,
1155     AUTHOR = "Jinlun Zhang and Drew Rothrock",
1156     TITLE = "Modeling Arctic Sea Ice with an Efficient Plastic Solution",
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1162 edhill 1.18
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