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1 heimbach 1.1 @string{arfm = {Annu.~Rev.~Fluid Mech.}}
2     @string{bams = {Bull.~Am.~Met.~Soc.}}
3     @string{blm = {Bound.~Layer~Meteorol.}}
4     @string{jgr = {J.~Geophys.~Res.}}
5     @string{ijrs = {Int.~J.~Remote Sensing}}
6     @string{jas = {J.~Atmos.~Sci.}}
7     @string{jpo = {J.~Phys.~Oceanogr.}}
8     @string{jclim = {J.~Clim.}}
9     @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}}
10     @string{jfm = {J.~Fluid Mech.}}
11     @string{jaot = {J.~Atmos.~Ocean.~Technol.}}
12     @string{jms = {J.~Mar.~Sys.}}
13     @string{gaos = {Global Atmos.~Ocean System}}
14     @string{grl = {Geophys.~Res.~Lett.}}
15     @string{dsr = {Deep Sea Res.}}
16     @string{dao = {Dyn.~Atmos.~Oceans}}
17     @string{mwr = {Mon.~Wea.~Rev.}}
18     @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}}
19     @string{tel = {Tellus}}
20     @string{cup = {Cambridge University Press}}
21     @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}}
22     @string{ifremer = {IFREMER/CERSAT}}
23     @string{igarss = {IEEE Press, Piscataway, N.J., USA}}
24     @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}}
25     @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}}
26     @string{mpi = {MPI f\"ur Meteorologie}}
27     @string{ecmwf = {ECMWF}}
28     @string{estec = {European Space Research and Technology Centre
29     (ESTEC)}}
30     @string{esa = {European Space Agency (ESA)}}
31    
32     @Article{bis-eta:92,
33     author = {C.H. Bishof and G.F. Corliss and L. Green and
34     A. Griewank and K. Haigler and P. Newman},
35     year = 1992,
36     title = {Automatic differentiation of advanced GFD codes
37     for multidisciplinary design},
38     journal = {Journal on Computing Systems in Engineering},
39     volume = {3},
40     pages = {625--638},
41     }
42    
43     @incollection{bis:94,
44     author = {C.H. Bishof},
45     year = 1994,
46     title = {Automatic differentiation, tangent linear models
47     and pseudo-adjoints},
48     booktitle = {High Performance Computing in the Geosciences},
49     series = {Series C: Mathematical and Physical Sciences},
50     pages = {59--80},
51     editor = {F.X. {Le Dimet}},
52     publisher = {Kluwer},
53     address = {Dordrecht, NL},
54     }
55    
56     @techreport{bis-eta:94,
57     author = {C. Bishof and A. Carle and P. Khademi and
58     A. Maurer},
59     year = 1994,
60     title = {The ADIFOR 2.0 system for the automatic
61     differentiation of FORTRAN 77 programs},
62     institution = {Argonne National Laboratory, Mathematics and
63     Computer Science Division},
64     type = {Argonne Preprint},
65     number = {ANL-MCS-P981-1194},
66     address = {ANL; 9700 South Cass Ave.;
67     Argonne (ILL), 90439; USA},
68     note = {http://www.mcs.anl.gov/autodiff/},
69     }
70    
71     @techreport{bis-roh:97,
72     author = {C. Bishof and L. Roh},
73     year = 1997,
74     title = {ADIC: An extensible automatic differentiation tool
75     for ANSI-C},
76     institution = {Argonne National Laboratory, Mathematics and
77     Computer Science Division},
78     type = {Argonne Preprint},
79     number = {ANL-MCS-P626-1196},
80     address = {ANL; 9700 South Cass Ave.;
81     Argonne (ILL), 90439; USA},
82     note = {http://www.mcs.anl.gov/autodiff/},
83     }
84    
85     @Article{cou-tal:87,
86     author = {P. Courtier and O. Talagrand},
87     year = 1987,
88     title = {Variational assimilation of meteorological
89     observations with the adjoint vorticity equation.
90     II: Numerical results},
91     journal = qjrms,
92     volume = {113},
93     pages = {1329--1347},
94     }
95    
96     @Article{cou-tal:90,
97     author = {P. Courtier and O. Talagrand},
98     year = 1990,
99     title = {Variational assimilation of meteorological
100     observations with direct and adjoint shallow-water
101     equations},
102     journal = tel,
103     volume = {42A},
104     pages = {531--549},
105     }
106    
107     @Article{cou-eta:94,
108     author = {P. Courtier and J.-N. Th{\'e}paut and
109     A. Hollingsworth},
110     year = 1994,
111     title = {A strategy for operational implementation of
112     4-D-VAR using an incremental approach},
113     journal = qjrms,
114     volume = {120},
115     pages = {1367--1387},
116     }
117    
118     @Article{err:97,
119     author = {R.M. Errico},
120     year = 1997,
121     title = {What is an adjoint model},
122     journal = bams,
123     volume = {78},
124     pages = {2577--2591},
125     }
126    
127     @Article{far-moo:92,
128     author = {B.F. Farrell and A.M. Moore},
129     year = {1992},
130     title = {An adjoint method for obtaining the most rapidly
131     growing perturbation to oceanic flows},
132     journal = jpo,
133     volume = {22},
134     pages = {338--349},
135     }
136    
137     @Article{far-ioa:96a,
138     author = {B.F. Farrell and P. Ioannou},
139     year = {1996a},
140     title = {Generalized stability theory. Part I:
141     Autonomous operators},
142     journal = jas,
143     volume = {53},
144     pages = {2025--2040},
145     }
146    
147     @Article{far-ioa:96b,
148     author = {B.F. Farrell and P. Ioannou},
149     year = {1996b},
150     title = {Generalized stability theory. Part I:
151     Nonautonomous operators},
152     journal = jas,
153     volume = {53},
154     pages = {2041--2053},
155     }
156    
157     @techreport{fau-pap:98,
158     author = {C. Faure and Y. Papegay},
159     year = 1998,
160     title = {Odyss{\'e}e User's Guide. Version 1.7},
161     institution = {Institut National de Recherche en Informatique
162     et en Automatique},
163     type = {Rapport Technique},
164     number = {0224},
165     address = {INRIA; 2004, route des Luciolis, B.P. 93;
166     06902 Sophia Antipolis Cedex; France},
167     note = {http://www-sop.inria.fr/safir/SAM/Odyssee/odyssee.html},
168     }
169    
170     @Article{fau:00,
171     author = {C. Faure},
172     year = {2000},
173     title = {Adjoining strategies for multi-layered programs},
174     journal = {Optimisation Methods and Software},
175     note = {in press},
176     }
177    
178     @Article{gen-mcw:90,
179     author = {P.R. Gent and J.C. McWilliams},
180     year = 1990,
181     title = {Isopycnal mixing in ocean circulation models},
182     journal = jpo,
183     volume = {20},
184     pages = {150--155},
185     }
186    
187     @Article{gen-eta:95,
188     author = {P.R. Gent and J. Willebrand and T.J. McDougall
189     and J.C. McWilliams},
190     year = 1995,
191     title = {Parameterizing eddy-induced tracer transports in
192     ocean circulation models},
193     journal = jpo,
194     volume = {25},
195     pages = {463--474},
196     }
197    
198     @Article{gie-kam:98,
199     author = {R. Giering and T. Kaminski},
200     year = 1998,
201     title = {Recipes for adjoint code construction},
202     journal = {ACM Transactions on Mathematical Software},
203     volume = 24,
204     pages = {437--474},
205     }
206    
207     @techreport{gie:99,
208     author = {R. Giering},
209     year = 1999,
210     title = {Tangent linear and Adjoint Model Compiler.
211     Users manual 1.4 (TAMC Version 5.2)},
212     institution = {Massachusetts Institute of Technology},
213     type = {Report},
214     number = {~},
215     address = {MIT/EAPS; 77 Massachusetts Ave.; Cambridge (MA)
216     02139; USA},
217     note = {http://puddle.mit.edu/$\sim$ralf/tamc/tamc.html},
218     }
219    
220     @incollection{gie:00,
221     author = {R. Giering},
222     editor = {P. Kasibhatla and M. Heimann and P. Rayner and
223     N. Mahowald and R.G. Prinn and D.E. Hartley},
224     year = 2000,
225     booktitle = {Inverse methods in global biogeochemical cycles},
226     title = {Tangent linear and adjoint biogeochemical models},
227     publisher = {American Geophysical Union},
228     series = {Geophysical Monograph},
229     volume = {114},
230     address = {Washington, DC},
231     pages = {33--48},
232     }
233    
234     @Article{gil-lem:89,
235     author = {J.C. Gilbert and C. Lemar\'echal},
236     year = 1989,
237     title = {Some numerical experiments with variable-storage
238     quasi-Newton algorithms},
239     journal = {Math. Programming},
240     volume = {45},
241     pages = {407--435},
242     }
243    
244     @book{gil-eta:81,
245     author = {P.E. Gill and W. Murray and M.H. Wright},
246     title = {Practical optimization},
247     year = 1981,
248     publisher = {Academic Press},
249     address = {London},
250     pages = {401 pp.},
251     }
252    
253     @book{gri:00,
254     author = {A. Griewank},
255     title = {Evaluating Derivatives. Principles and Techniques
256     of Algorithmic Differentiation},
257     year = 2000,
258     series = {Frontiers in Applied Mathematics},
259     volume = {19},
260     publisher = {SIAM},
261     address = {Philadelphia},
262     pages = {369 pp.},
263     }
264    
265     @Article{hal-eta:82,
266     author = {M.C.G. Hall and D.G. Caccuci and M.E. Schlesinger},
267     year = 1982,
268     title = {Sensitivity analysis of a radiative-convective
269     model by the adjoint method},
270     journal = jas,
271     volume = {39},
272     pages = {2038--3050},
273     }
274 cnh 1.6
275     @Article{Haney,
276     author = {R.L. Haney},
277     title = {Surface thermal boundary conditions for ocean
278     circulation models},
279     journal = jpo,
280     year = 1971,
281     volume = 1,
282     pages = {241--248}
283     }
284 heimbach 1.1
285     @Article{hil-eta:01,
286     author = {C. Hill and M. Follows and V. Bugnion and
287     J. Marshall},
288 cnh 1.10 year = {2002},
289 heimbach 1.1 title = {Spatial and Temporal Impacts of ocean general
290     circulation on carbon sequestration},
291 cnh 1.6 journal = {Global Biogeochemical Cycles},
292 heimbach 1.1 note = {submitted},
293     }
294 cnh 1.6
295     @Article{Holland75,
296     author = {W.R. Holland and L. B. Lin},
297     year = {1975a},
298     title = {On the origin of mesoscale eddies and their contribution
299     to the general circulation of the ocean. I. A preliminary
300     numerical experiment},
301     journal = jpo,
302     volume = {5},
303     pages = {642-657}
304     }
305    
306     @Article{hol-lin:75b,
307     author = {W.R. Holland and L. B. Lin},
308     year = {1975b},
309     title = {On the origin of mesoscale eddies and their contribution
310     to the general circulation of the ocean. II. A parameter
311     study},
312     journal = jpo,
313     volume = {5},
314     pages = {658-669}
315     }
316    
317 heimbach 1.1 @book{kas-eta:00,
318     author = {P. Kasibhatla and M. Heimann and P. Rayner and
319     N. Mahowald and R.G. Prinn and D.E. Hartley},
320     year = 2000,
321     title = {Inverse methods in global biogeochemical cycles},
322     publisher = {American Geophysical Union},
323     series = {Geophysical Monograph},
324     volume = {114},
325     address = {Washington, DC},
326     pages = {324 pp.},
327     }
328    
329     @Article{lar-eta:94,
330     author = {W.G. Large and J.C. McWilliams and S.C. Doney},
331     year = 1994,
332     title = {Oceanic vertical mixing: A review and a model
333     with nonlocal boundary layer parameterization},
334     journal = {Rev.~Geophys.},
335     volume = {32},
336     pages = {363--403},
337     }
338    
339     @Article{lar-eta:97,
340     author = {W.G. Large and G. Danabasoglu and S.C. Doney
341     and J.C. McWilliams},
342     year = 1997,
343     title = {Sensitivity to surface forcing and boundary layer
344     mixing in a global ocean model: annual-mean
345     climatology},
346     journal = jpo,
347     volume = {27},
348     pages = {2418--2447},
349     }
350    
351     @Article{led-tal:86,
352     author = {F.-X. {Le Dimet} and O. Talagrand},
353     year = 1986,
354     title = {Variational algorithms for analysis and
355     assimilation of meteorological observations:
356     theoretical aspects},
357     journal = tel,
358     volume = {38A},
359     pages = {97--110},
360     }
361 cnh 1.6
362     @TechReport{lev:94a,
363     author = {S. Levitus and T.P.Boyer},
364     title = {{World Ocean Atlas 1994 Volume 3: Salinity}},
365     institution = {NOAA Atlas NESDIS 3},
366     year = 1994,
367     OPTkey = {},
368     OPTtype = {},
369     OPTnumber = {},
370     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
371     OPTmonth = {},
372     OPTnote = {},
373     OPTannote = {}
374     }
375    
376    
377     @TechReport{Levitus94,
378     author = {S. Levitus and T.P.Boyer},
379     title = {{World Ocean Atlas 1994 Volume 4: Temperature}},
380     institution = {NOAA Atlas NESDIS 4},
381     year = 1994,
382     OPTkey = {},
383     OPTtype = {},
384     OPTnumber = {},
385     OPTaddress = {U.S. Department of Commerce, Washington D.C.},
386     OPTmonth = {},
387     OPTnote = {},
388     OPTannote = {}
389     }
390    
391 heimbach 1.1
392     @Article{lew-der:85,
393     author = {J. Lewis and J. Derber},
394     year = {1985},
395     title = {The use of adjoint equations to solve a variational
396     adjustment problem with advective constraints},
397     journal = {Tellus},
398     volume = {37A},
399     pages = {309--322},
400     }
401    
402     @techreport{lon:88,
403     author = {R.B. Long},
404     year = 1988,
405     title = {Notes on assimilating observations into
406     numerical models},
407     institution = {Delft Hydraulics},
408     type = {Report},
409     number = {~},
410     pages = {38 pp.},
411     address = {Delft (NL)},
412     }
413    
414     @Article{maro-wun:93,
415     author = {J. Marotzke and C. Wunsch},
416     year = 1993,
417     title = {Finding the steady state of a general circulation
418     model through data assimilation:
419     Application to the North Atlantic Ocean},
420     journal = jgr,
421     volume = {98, C11},
422     pages = {20,149--20,167},
423     }
424    
425     @Article{maro-eta:99,
426     author = {J. Marotzke and R. Giering and K.Q. Zhang and
427     D. Stammer and C. Hill and T. Lee},
428     year = 1999,
429     title = {Construction of the adjoint MIT ocean general
430     circulation model and application to Atlantic heat
431     transport variability},
432     journal = jgr,
433     volume = {104, C12},
434     pages = {29,529--29,547},
435     }
436    
437     @Article{mars-eta:97a,
438     author = {J. Marshall and C. Hill and L. Perelman and
439     A. Adcroft},
440     year = {1997a},
441     title = {Hydrostatic, quasi-hydrostatic and
442     nonhydrostatic ocean modeling},
443     journal = jgr,
444     volume = {102, C3},
445     pages = {5,733--5,752},
446     }
447    
448     @Article{mars-eta:97b,
449     author = {J. Marshall and A. Adcroft and C. Hill and
450     L. Perelman and C. Heisey},
451     year = {1997b},
452     title = {Hydrostatic, quasi-hydrostatic and
453     nonhydrostatic ocean modeling},
454     journal = jgr,
455     volume = {102, C3},
456     pages = {5,753--5,766},
457     }
458    
459     @Article{mars-sha:98,
460     author = {J. Marshall and H. Jones and C. Hill},
461     year = 1998,
462     title = {Efficient ocean modeling using
463     non-hydrostatic algorithms},
464     journal = jms,
465     volume = {18},
466     pages = {115--134},
467     }
468    
469     @Article{mcw:96,
470     author = {J. McWilliams},
471     year = 1996,
472     title = {Modeling the oceanic general circulation},
473     journal = arfm,
474     volume = {28},
475     pages = {215--248},
476     }
477    
478     @Article{res-eta:98,
479     author = {J.M. Restrepo and G.K. Leaf and A. Griewank},
480     year = 1998,
481 cnh 1.5 title = {Circumventing storage limitations in variational
482 heimbach 1.1 data assimilation studies},
483     journal = {SIAM J. Sci. Comput.},
484     volume = {19},
485     pages = {1586--1605},
486     }
487    
488     @Article{ros-eta:93,
489     author = {N. Rostaing and S. Dalmas and A. Galligo},
490     year = 1993,
491     title = {Automatic differentiation in Odyss{\'e}e},
492     journal = {Tellus},
493     volume = {45A},
494     pages = {558--568},
495     }
496    
497     @incollection{she-and:89,
498     author = {J. Sheinbaum and D.L.T. Anderson},
499     year = 1989,
500     title = {Assimilation of XBT data using a variational
501     technique},
502     booktitle = {Oceanic circulation models:
503     Combining data and dynamics},
504     pages = {257--285},
505     series = {NATO ASI Series},
506     volume = {C 284},
507     editor = {{D.L.T. Anderson and J. Willebrand}},
508     publisher = {Springer-Verlag},
509     address = {Berlin (Germany)},
510     }
511 cnh 1.6
512     @Article{DaSilva94,
513     author = {A. da Silva and A. C. Young and S. Levitus},
514     year = 1994,
515     title = {Atlas of Surface Marine Data 1994, Volume 1: Algorithms and Procedures},
516     journal = {NOAA Atlas NESDIS},
517     volume = {6},
518     publisher = {U.S. Department of Commerce},
519     address = {Washington, D.C. (USA)},
520     note = {http:////ingrid.ldeo.columbia.edu/SOURCES/.DASILVA/.SMD94/},
521     }
522 heimbach 1.1
523     @techreport{sta-eta:97,
524     author = {D. Stammer and C. Wunsch and R. Giering and
525 cnh 1.6 Q. Zhang and J. Marotzke and J. Marshall and
526 heimbach 1.1 C. Hill},
527     year = 1997,
528     title = {The global ocean circulation estimated from
529     TOPEX/POSEIDON altimetry and a general circulation
530     model},
531     institution = {Center for Global Change Science, Massachusetts
532     Institute of Technology},
533     type = {Technical Report},
534     number = {49},
535     pages = {40 pp.},
536     address = {Cambridge (MA), USA},
537     }
538    
539     @Article{sta-eta:01,
540     author = {D. Stammer and C. Wunsch and R. Giering and
541     C. Eckert and P. Heimbach and J. Marotzke and
542     A. Adcroft and C. Hill and J. Marshall},
543     year = 2001,
544     title = {The global ocean circulation during 1992 -- 1997,
545     estimated from ocean observations and a general
546     circulation model},
547     journal = jgr,
548 cnh 1.6 note = {in press},
549     }
550    
551     @Article{Stommel66,
552     author = {H. Stommel},
553     year = 1948,
554     title = {The western intensification of wind-driven ocean currents},
555     journal = {Trans. Am. Geophys. Union},
556     volume = {29},
557     pages = {206},
558 heimbach 1.1 }
559    
560     @Article{tal-cou:87,
561     author = {O. Talagrand and P. Courtier},
562     year = 1987,
563     title = {Variational assimilation of meteorological
564     observations with the adjoint vorticity equation.
565     I: Theory},
566     journal = qjrms,
567     volume = {113},
568     pages = {1311--1328},
569     }
570    
571     @Article{tal:97,
572     author = {O. Talagrand},
573     year = 1997,
574     title = {Assimilation of observations, an introduction},
575     journal = {J.~Meteor.~Soc.~Japan},
576     volume = {75},
577     pages = {191--209},
578     }
579    
580     @book{tar:87,
581     author = {A. Tarantola},
582     title = {Inverse Problem Theory: Methods for data fitting
583     and model parameter estimation},
584     year = 1987,
585     publisher = {Elsevier},
586     address = {Amsterdam},
587     pages = {629 pp.},
588     }
589    
590     @techreport{tha:87,
591     author = {W.C. Thacker},
592     year = 1987,
593     title = {Three lectures on fitting numerical models to
594     observations},
595     institution = {GKSS},
596     type = {Report},
597     number = {87/E/65},
598     pages = {64 pp.},
599     address = {Geesthacht (D)},
600     }
601    
602     @Article{tha-lon:88,
603     author = {W.C. Thacker and R.B. Long},
604     year = 1988,
605     title = {Fitting dynamics to data},
606     journal = jgr,
607     volume = {93, C2},
608     pages = {1,227--1,240},
609     }
610    
611     @Article{tha:88,
612     author = {W.C. Thacker},
613     year = 1988,
614     title = {Fitting models to inadequate data by enforcing
615     spatial and temporal smoothness},
616     journal = jgr,
617     volume = {93},
618     pages = {10,655--10,665},
619     }
620    
621     @Article{tha:89,
622     author = {W.C. Thacker},
623     year = 1989,
624     title = {The role of the Hessian matrix in fitting models
625     to measurements},
626     journal = jgr,
627     volume = {94, C5},
628     pages = {6,177--6,196},
629     }
630    
631     @Article{tha-rag:94,
632     author = {W.C. Thacker and R. Raghunath},
633     year = 1994,
634     title = {The rigid lid's contribution to the ill-conditioning
635     of oceanic inverse problems},
636     journal = jgr,
637     volume = {99, C5},
638     pages = {10,131--10,141},
639     }
640    
641     @Article{tzi-tha:89,
642     author = {E. Tziperman and W.C. Thacker},
643     year = {1989},
644     title = {An optimal control / adjoint equation approach
645     to studying the ocean general circulation},
646     journal = jpo,
647     volume = {19},
648     pages = {1471--1485},
649     }
650    
651     @Article{tzi-eta:92a,
652     author = {E. Tziperman and W.C. Thacker and R.B. Long and
653     S. Hwang},
654     year = {1992a},
655     title = {Oceanic data analysis using a general circulation
656     model. I: Simulations},
657     journal = jpo,
658     volume = {22},
659     pages = {1434--1457},
660     }
661    
662     @Article{tzi-eta:92b,
663     author = {E. Tziperman and W.C. Thacker and R.B. Long and
664     S. Hwang and S.R. Rintoul},
665     year = {1992b},
666     title = {Oceanic data analysis using a general circulation
667     model. I: A North Atlantic model},
668     journal = jpo,
669     volume = {22},
670     pages = {1458--1485},
671     }
672    
673     @book{wun:96,
674     author = {C. Wunsch},
675     title = {The ocean circulation inverse problem},
676     year = 1996,
677     publisher = cup,
678     address = {Cambridge (UK)},
679     pages = {442 pp.},
680     }
681    
682     @Article{zha-mar:99,
683     author = {K.Q. Zhang and J. Marotzke},
684     year = 1999,
685     title = {The importance of open-boundary estimation for an
686     Indian Ocean GCM-data synthesis},
687     journal = {J.~Marine Res.},
688     volume = {57},
689     pages = {305--334},
690     }
691 adcroft 1.2
692    
693     @InCollection{hill:95,
694     author = {Hill, C. and J. Marshall},
695     title = {Application of a Parallel Navier-Stokes Model to
696     Ocean Circulation in Parallel Computational Fluid
697     Dynamics},
698     booktitle = {Implementations and Results Using Parallel
699     Computers},
700     pages = {545-552},
701     publisher = {Elsevier Science B.V.: New York},
702     year = 1995,
703     editor = {A. Ecer, J. Periaux, N. Satofuka and S. Taylor}
704     }
705    
706    
707     @Article{marshall:97a,
708 adcroft 1.4 author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft},
709 adcroft 1.2 title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean
710     modeling},
711     journal = {JGR},
712     year = 1997,
713     volume = 102,
714     number = {C3},
715     pages = {5733-5752}
716     }
717    
718     @Article{marshall:97b,
719 cnh 1.10 author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey},
720 adcroft 1.2 title = {A finite-volume, incompressible Navier Stokes model for
721     studies of the ocean on parallel computers},
722     journal = {JGR},
723     year = 1997,
724     volume = 102,
725     number = {C3},
726     pages = {5753-5766}
727     }
728    
729     @Article{adcroft:97,
730 adcroft 1.4 author = {Adcroft, A.J. and Hill, C.N. and J. Marshall},
731 adcroft 1.2 title = {Representation of topography by shaved cells in a height
732     coordinate ocean model},
733     journal = {MWR},
734     year = 1997,
735     volume = 125,
736     pages = {2293-2315}
737     }
738    
739     @Article{visbeck:97,
740     author = {Visbeck, M., J. Marshall, T. Haine, and M. Spall},
741     title = {Specification of eddy transfer coefficients in
742     coarse-resolution ocean circulation models},
743     journal = {JPO},
744     year = 1997,
745     volume = 27,
746     number = 3,
747     pages = {381-402}
748     }
749    
750     @Article{shaw:98,
751     author = {Shaw; A. Arvind, Cho, K.-C., Hill, C., Johnson, R.P.
752     and Marshall, J.},
753     title = {A comparison of implicitly parallel multi-threaded and
754     data-parallel implementations of an ocean model based
755     on the Navier-Stokes equations},
756     journal = {J. of Parallel and Distributed Computing},
757     year = 1998,
758     volume = 48,
759     number = 1,
760     pages = {1-51}
761     }
762    
763     @Article{marshall:98,
764 cnh 1.10 author = {J. Marshall and H. Jones and C. Hill},
765 adcroft 1.2 title = {Efficient ocean modeling using non-hydrostatic algorithms},
766     journal = {JMR},
767     year = 1998,
768     volume = 18,
769     pages = {115-134}
770     }
771    
772     @Article{mjn:99,
773     author = {Marshall, J., Jamous, D and J. Nilsson},
774     title = {Reconciling `thermodynamic' and `dynamic' methods of
775     computation of water-mass transformation rates},
776     journal = {DSR},
777     year = 1999,
778     volume = 46,
779     pages = {545-572}
780     }
781    
782     @Article{ms:99,
783     author = {Marshall, J and F. Schott},
784     title = {Open ocean deep convection: observations, models and theory},
785     journal = {Rev. Geophys.},
786     year = 1999,
787     volume = 37,
788     number = 1,
789     pages = {1-64}
790     }
791    
792     @Article{adcroft:99,
793     author = {Adcroft, A., Hill C. and J. Marshall},
794     title = {A new treatment of the Coriolis terms in C-grid models
795     at both high and low resolutions},
796     journal = {MWR},
797     year = 1999,
798     volume = 127,
799     pages = {1928-1936}
800     }
801    
802     @InProceedings{hill:99,
803     author = {Chris Hill, Alistair Adcroft, Daniel Jamous and John Marshall},
804     title = {A Strategy for Terascale Climate Modeling},
805 cnh 1.8 booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology},
806 cnh 1.9 year = 1999,
807     pages = {406-425},
808     publisher = {World Scientific},
809 adcroft 1.2 }
810    
811     @Article{wardle:00,
812     author = {Wardle R. and Marshall J.},
813     title = {Representation of eddies in primitive equation models by a PV flux},
814     journal = {JPO},
815     year = 2000,
816     volume = 30,
817     number = 10,
818     pages = {2481-2503}
819     }
820    
821     @Article{ac:02,
822     author = {Adcroft, A. and J.-M. Campin},
823     title = {Comparison of finite volume schemes and direct-space-time
824     methods for ocean circulation models},
825     journal = {OM},
826     year = 2002,
827     note = {in preparation}
828     }
829    
830     @Article{adcroft:02,
831     author = {Adcroft et al.},
832     title = {Energy conversion in discrete numerical models},
833     journal = {OM},
834     year = 2002,
835     note = {in preparation}
836     }
837    
838     @InCollection{arakawa:77,
839     author = {Arakawa, A. and Lamb, V.},
840     title = {Computational Design of the Basic Dynamical Processes of
841     the UCLA General Circulation Model},
842     booktitle = {Methods in Computational Physics},
843     pages = {174-267},
844     publisher = {Academic Press},
845     year = 1977,
846     volume = 17
847     }
848    
849     @Article{adcroft:98,
850     author = {Adcroft, A. and Marshall, D.},
851 adcroft 1.3 title = {How slippery are piecewise-constant coastlines in numerical
852     ocean models?},
853 adcroft 1.2 journal = {Tellus},
854 adcroft 1.3 year = 1998,
855     volume = 50,
856     number = 1,
857     pages = {95-108}
858     }
859    
860     @PhdThesis{adcroft:95,
861     author = {Adcroft, A.},
862     title = {Numerical Algorithms for use in a Dynamical Model of the
863     Ocean},
864     school = {Imperial College, London},
865     year = 1995
866     }
867    
868     @Article{griffies:00,
869     author = {Griffies, S.,M. and Hallberg, R.,W.},
870     title = {Biharmonic friction with a Smagorinsky-like viscosity for
871     use in large-scale eddy-permitting ocean models},
872     journal = {MWR},
873     year = 2000,
874     volume = 128,
875     number = 8,
876     pages = {2935-2946}
877     }
878    
879     @Article{wajsowicz:93,
880     author = {Wajsowicz, R.},
881     title = {A CONSISTENT FORMULATION OF THE ANISOTROPIC STRESS TENSOR
882     FOR USE IN MODELS OF THE LARGE-SCALE OCEAN CIRCULATION},
883     journal = {JCP},
884     year = 1993,
885     volume = 105,
886     number = 2,
887     pages = {333-338}
888     }
889    
890     @Article{campin:02,
891     author = {Campin et al.},
892     title = {Conservation of properties in a free-surface model},
893     journal = {OM},
894     year = 2002,
895     note = {in preparation}
896 adcroft 1.4 }
897    
898     @Article{dm:95,
899     author = {Danabasoglu, G. and McWilliams J.C.},
900     title = {Sensitivity of the global ocean circulation to parameterizations of mesoscale tracer transports},
901     journal = {JC},
902     year = 1995,
903     volume = 8,
904     number = 12,
905     pages = {2967-2987}
906     }
907    
908     @Article{ldd:97,
909     author = {Large, W.G. and Danabasoglu, G. and Doney, S.C. and McWilliams, J.C.},
910     title = {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology},
911     journal = {JPO},
912     year = 1997,
913     volume = 27,
914     number = 11,
915     pages = {2418-2447}
916     }
917    
918     @Article{gkw:99,
919     author = {Gerdes R. and Koberle C. and Beckmann A. and Herrmann P. and Willebrand J.},
920     title = {Mechanisms for spreading of Mediterranean water in
921     coarse-resolution numerical models},
922     journal = {JPO},
923     year = 1999,
924     volume = 29,
925     number = 8,
926     pages = {1682-1700}
927     }
928    
929     @Article{roe:85,
930     author = {Roe, P.L.},
931     title = {Some contributions to the modeling of discontinuous flows},
932     journal = {Lect. Notes Appl. Math.},
933     year = 1985,
934     volume = 22,
935     pages = {163-193}
936 adcroft 1.2 }

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