MITgcm/manual/manual_changes.txt

============================================================================
2010 Aug 26:

Change manual directory structure inside cvs repository (gcmpack/manual):

Objective:
- to have all the tex files in manual/*/*/*.tex
- chapter dir with an explicit name (easier to insert a new chapter)
- renamed the tutorial documentation dir to match the
  MITgcm/verification (but without the "tutorial_" suffix).

In order to keep the cvs history of each file, the following changes were
made directly from gcmpack/manual dir (whereas using cvs add/remove the
history would have been broken in 2 pieces and difficult to follow):

-------
step 0:
-------
 2010 Aug 25, from orwell.csail.mit.edu: make a tar file of gcmpack/manual/
 into: orwell:/export/export-9/ARCHIVE/gcmpack_manual.20100825.tar
-rw-rw-r--.  1 jmc   555   212879360 2010-08-25 11:46 gcmpack_manual.20100825.tar

------------------------
step 1: copy to new dir
-------
2010 Aug 26, from orwell.csail.mit.edu:
cd /export/export-9/gcmpack/manual/

cp -p -r part1      s_overview
cp -p -r part2      s_algorithm
cp -p -r part3      s_getstarted
 mv s_getstarted/case_studies    s_examples
cp -p -r part4      s_software
cp -p -r part5      s_autodiff
cp -p -r part6      s_phys_pkgs
cp -p -r part7      s_outp_pkgs
cp -p -r part8      s_ecco
cp -p -r under_dvlp s_under_dvlp

cd s_overview
 mkdir text figs
 mv part1.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv manual.src,v text
 mv *.eps,v *.ps,v *.fig,v figs

cd s_algorithm
 mkdir text figs
 mv part2.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v *.ps,v *.fig,v *.jpg,v figs

cd s_getstarted
 mkdir text
 mv part3.tex,v text/top_section.tex,v
 mv tutorials.tex,v ../s_examples
 mv *.tex,v text

cd s_examples
 mkdir text
 mv tutorials.tex,v text/model_examples.tex,v
 mv advection_in_gyre_circulation  advection_in_gyre
 mv biogeochem_tutorial            global_oce_biogeo
 mv climatalogical_ogcm            global_oce_latlon
 mv doubly_periodic_convection     deep_convection
 mv fourlayer_gyre                 baroclinic_gyre
 mv global_oce_estimation          global_oce_optim
 mv offline                        cfc_offline
 mv ogcm_in_pressure               global_oce_in_p
 mv sens_airsea_tracer             tracer_adjsens

 mv carbon_outgassing_sensitivity/Attic tracer_adjsens/
 mv hs_atmosphere/Attic                 held_suarez_cs/
 rm -rf adiabatic_front_collapse
 rm -rf boundary_forced_internal_wave
 rm -rf flow_over_topography
 rmdir carbon_outgassing_sensitivity
 rmdir hs_atmosphere
 rmdir offline_north_atlantic

cd s_software
 mkdir text figs
 mv part4.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v figs

cd s_autodiff
 mkdir text figs
 mv part5.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v *.fig,v figs

cd s_phys_pkgs
 mkdir text figs
 mv part6.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v *.ps,v *.ppt,v figs

cd s_outp_pkgs
 mkdir text
 mv part7.tex,v text/top_section.tex,v
 mv *.tex,v text

cd s_ecco
 mkdir text
 mv part8.tex,v text/top_section.tex,v
 mv *.tex,v text

cd s_under_dvlp
 mkdir text figs
 mv under_dvlp.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v figs

----------------------------------------------------
step 2: download the new manual and check-in changes for new directory path.
 (2010 Aug 27); see cvs-commit log messages
-------------------------------
step 3: remove old chapter dir:
-------
2010 Aug 31, from orwell.csail.mit.edu:
cd /export/export-9/gcmpack/manual/
 /bin/rm -rf part1 part2 part3 part4 part5 part6 part7 part8 under_dvlp
============================================================================
1	============================================================================
2	2010 Aug 26:
3
4	Change manual directory structure inside cvs repository (gcmpack/manual):
5
6	Objective:
7	- to have all the tex files in manual///*.tex
8	- chapter dir with an explicit name (easier to insert a new chapter)
9	- renamed the tutorial documentation dir to match the
10	MITgcm/verification (but without the "tutorial_" suffix).
11
12	In order to keep the cvs history of each file, the following changes were
13	made directly from gcmpack/manual dir (whereas using cvs add/remove the
14	history would have been broken in 2 pieces and difficult to follow):
15
16	-------
17	step 0:
18	-------
19	2010 Aug 25, from orwell.csail.mit.edu: make a tar file of gcmpack/manual/
20	into: orwell:/export/export-9/ARCHIVE/gcmpack_manual.20100825.tar
21	-rw-rw-r--. 1 jmc 555 212879360 2010-08-25 11:46 gcmpack_manual.20100825.tar
22
23	------------------------
24	step 1: copy to new dir
25	-------
26	2010 Aug 26, from orwell.csail.mit.edu:
27	cd /export/export-9/gcmpack/manual/
28
29	cp -p -r part1 s_overview
30	cp -p -r part2 s_algorithm
31	cp -p -r part3 s_getstarted
32	mv s_getstarted/case_studies s_examples
33	cp -p -r part4 s_software
34	cp -p -r part5 s_autodiff
35	cp -p -r part6 s_phys_pkgs
36	cp -p -r part7 s_outp_pkgs
37	cp -p -r part8 s_ecco
38	cp -p -r under_dvlp s_under_dvlp
39
40	cd s_overview
41	mkdir text figs
42	mv part1.tex,v text/top_section.tex,v
43	mv *.tex,v text
44	mv manual.src,v text
45	mv .eps,v .ps,v *.fig,v figs
46
47	cd s_algorithm
48	mkdir text figs
49	mv part2.tex,v text/top_section.tex,v
50	mv *.tex,v text
51	mv .eps,v .ps,v .fig,v .jpg,v figs
52
53	cd s_getstarted
54	mkdir text
55	mv part3.tex,v text/top_section.tex,v
56	mv tutorials.tex,v ../s_examples
57	mv *.tex,v text
58
59	cd s_examples
60	mkdir text
61	mv tutorials.tex,v text/model_examples.tex,v
62	mv advection_in_gyre_circulation advection_in_gyre
63	mv biogeochem_tutorial global_oce_biogeo
64	mv climatalogical_ogcm global_oce_latlon
65	mv doubly_periodic_convection deep_convection
66	mv fourlayer_gyre baroclinic_gyre
67	mv global_oce_estimation global_oce_optim
68	mv offline cfc_offline
69	mv ogcm_in_pressure global_oce_in_p
70	mv sens_airsea_tracer tracer_adjsens
71
72	mv carbon_outgassing_sensitivity/Attic tracer_adjsens/
73	mv hs_atmosphere/Attic held_suarez_cs/
74	rm -rf adiabatic_front_collapse
75	rm -rf boundary_forced_internal_wave
76	rm -rf flow_over_topography
77	rmdir carbon_outgassing_sensitivity
78	rmdir hs_atmosphere
79	rmdir offline_north_atlantic
80
81	cd s_software
82	mkdir text figs
83	mv part4.tex,v text/top_section.tex,v
84	mv *.tex,v text
85	mv *.eps,v figs
86
87	cd s_autodiff
88	mkdir text figs
89	mv part5.tex,v text/top_section.tex,v
90	mv *.tex,v text
91	mv .eps,v .fig,v figs
92
93	cd s_phys_pkgs
94	mkdir text figs
95	mv part6.tex,v text/top_section.tex,v
96	mv *.tex,v text
97	mv .eps,v .ps,v *.ppt,v figs
98
99	cd s_outp_pkgs
100	mkdir text
101	mv part7.tex,v text/top_section.tex,v
102	mv *.tex,v text
103
104	cd s_ecco
105	mkdir text
106	mv part8.tex,v text/top_section.tex,v
107	mv *.tex,v text
108
109	cd s_under_dvlp
110	mkdir text figs
111	mv under_dvlp.tex,v text/top_section.tex,v
112	mv *.tex,v text
113	mv *.eps,v figs
114
115	----------------------------------------------------
116	step 2: download the new manual and check-in changes for new directory path.
117	(2010 Aug 27); see cvs-commit log messages
118	-------------------------------
119	step 3: remove old chapter dir:
120	-------
121	2010 Aug 31, from orwell.csail.mit.edu:
122	cd /export/export-9/gcmpack/manual/
123	/bin/rm -rf part1 part2 part3 part4 part5 part6 part7 part8 under_dvlp
124	============================================================================