MITgcm/manual/manual_changes.txt

============================================================================
2010 Aug 26:

Change manual directory structure inside cvs repository (gcmpack/manual):

Objective:
- to have all the tex files in manual/*/*/*.tex
- chapter dir with an explicit name (easier to insert a new chapter)
- renamed the tutorial documentation dir to match the
  MITgcm/verification (but without the "tutorial_" suffix).

In order to keep the cvs history of each file, the following changes were
made directly from gcmpack/manual dir (whereas using cvs add/remove the
history would have been broken in 2 pieces and difficult to follow):

------------------------
step 1: copy to new dir
-------
2010 Aug 26, from orwell.csail.mit.edu:
cd /export/export-9/gcmpack/manual/

cp -p -r part1      s_overview
cp -p -r part2      s_algorithm
cp -p -r part3      s_getstarted
 mv s_getstarted/case_studies    s_examples
cp -p -r part4      s_software
cp -p -r part5      s_autodiff
cp -p -r part6      s_phys_pkgs
cp -p -r part7      s_outp_pkgs
cp -p -r part8      s_ecco
cp -p -r under_dvlp s_under_dvlp

cd s_overview
 mkdir text figs
 mv part1.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv manual.src,v text
 mv *.eps,v *.ps,v *.fig,v figs

cd s_algorithm
 mkdir text figs
 mv part2.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v *.ps,v *.fig,v *.jpg,v figs

cd s_getstarted
 mkdir text
 mv part3.tex,v text/top_section.tex,v
 mv tutorials.tex,v ../s_examples
 mv *.tex,v text

cd s_examples
 mkdir text
 mv tutorials.tex,v text/model_examples.tex,v
 mv advection_in_gyre_circulation  advection_in_gyre
 mv biogeochem_tutorial            global_oce_biogeo
 mv climatalogical_ogcm            global_oce_latlon
 mv doubly_periodic_convection     deep_convection
 mv fourlayer_gyre                 baroclinic_gyre
 mv global_oce_estimation          global_oce_optim
 mv offline                        cfc_offline
 mv ogcm_in_pressure               global_oce_in_p
 mv sens_airsea_tracer             tracer_adjsens

 mv carbon_outgassing_sensitivity/Attic tracer_adjsens/
 mv hs_atmosphere/Attic                 held_suarez_cs/
 rm -rf adiabatic_front_collapse
 rm -rf boundary_forced_internal_wave
 rm -rf flow_over_topography
 rmdir carbon_outgassing_sensitivity
 rmdir hs_atmosphere
 rmdir offline_north_atlantic

cd s_software
 mkdir text figs
 mv part4.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v figs

cd s_autodiff
 mkdir text figs
 mv part5.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v *.fig,v figs

cd s_phys_pkgs
 mkdir text figs
 mv part6.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v *.ps,v *.ppt,v figs

cd s_outp_pkgs
 mkdir text
 mv part7.tex,v text/top_section.tex,v
 mv *.tex,v text

cd s_ecco
 mkdir text
 mv part8.tex,v text/top_section.tex,v
 mv *.tex,v text

cd s_under_dvlp
 mkdir text figs
 mv under_dvlp.tex,v text/top_section.tex,v
 mv *.tex,v text
 mv *.eps,v figs

----------------------------------------------------
step 2: download the new manual and check-in changes for new directory path.
 (2010 Aug 27); see cvs-commit log messages
-------------------------------
step 3: remove old chapter dir:
-------
 (to do soon, but might encounter some permission issues)
 from orwell.csail.mit.edu:
cd /export/export-9/gcmpack/manual/
 /bin/rm -rf part1 part2 part3 part4 part5 part6 part7 part8 under_dvlp
============================================================================
1	jmc	1.1	============================================================================
2			2010 Aug 26:
3
4			Change manual directory structure inside cvs repository (gcmpack/manual):
5
6			Objective:
7			- to have all the tex files in manual///*.tex
8			- chapter dir with an explicit name (easier to insert a new chapter)
9			- renamed the tutorial documentation dir to match the
10			MITgcm/verification (but without the "tutorial_" suffix).
11
12			In order to keep the cvs history of each file, the following changes were
13			made directly from gcmpack/manual dir (whereas using cvs add/remove the
14			history would have been broken in 2 pieces and difficult to follow):
15
16			------------------------
17			step 1: copy to new dir
18			-------
19			2010 Aug 26, from orwell.csail.mit.edu:
20			cd /export/export-9/gcmpack/manual/
21
22			cp -p -r part1 s_overview
23			cp -p -r part2 s_algorithm
24			cp -p -r part3 s_getstarted
25			mv s_getstarted/case_studies s_examples
26			cp -p -r part4 s_software
27			cp -p -r part5 s_autodiff
28			cp -p -r part6 s_phys_pkgs
29			cp -p -r part7 s_outp_pkgs
30			cp -p -r part8 s_ecco
31			cp -p -r under_dvlp s_under_dvlp
32
33			cd s_overview
34			mkdir text figs
35			mv part1.tex,v text/top_section.tex,v
36			mv *.tex,v text
37			mv manual.src,v text
38			mv .eps,v .ps,v *.fig,v figs
39
40			cd s_algorithm
41			mkdir text figs
42			mv part2.tex,v text/top_section.tex,v
43			mv *.tex,v text
44			mv .eps,v .ps,v .fig,v .jpg,v figs
45
46			cd s_getstarted
47			mkdir text
48			mv part3.tex,v text/top_section.tex,v
49			mv tutorials.tex,v ../s_examples
50			mv *.tex,v text
51
52			cd s_examples
53			mkdir text
54			mv tutorials.tex,v text/model_examples.tex,v
55			mv advection_in_gyre_circulation advection_in_gyre
56			mv biogeochem_tutorial global_oce_biogeo
57			mv climatalogical_ogcm global_oce_latlon
58			mv doubly_periodic_convection deep_convection
59			mv fourlayer_gyre baroclinic_gyre
60			mv global_oce_estimation global_oce_optim
61			mv offline cfc_offline
62			mv ogcm_in_pressure global_oce_in_p
63			mv sens_airsea_tracer tracer_adjsens
64
65			mv carbon_outgassing_sensitivity/Attic tracer_adjsens/
66			mv hs_atmosphere/Attic held_suarez_cs/
67			rm -rf adiabatic_front_collapse
68			rm -rf boundary_forced_internal_wave
69			rm -rf flow_over_topography
70			rmdir carbon_outgassing_sensitivity
71			rmdir hs_atmosphere
72			rmdir offline_north_atlantic
73
74			cd s_software
75			mkdir text figs
76			mv part4.tex,v text/top_section.tex,v
77			mv *.tex,v text
78			mv *.eps,v figs
79
80			cd s_autodiff
81			mkdir text figs
82			mv part5.tex,v text/top_section.tex,v
83			mv *.tex,v text
84			mv .eps,v .fig,v figs
85
86			cd s_phys_pkgs
87			mkdir text figs
88			mv part6.tex,v text/top_section.tex,v
89			mv *.tex,v text
90			mv .eps,v .ps,v *.ppt,v figs
91
92			cd s_outp_pkgs
93			mkdir text
94			mv part7.tex,v text/top_section.tex,v
95			mv *.tex,v text
96
97			cd s_ecco
98			mkdir text
99			mv part8.tex,v text/top_section.tex,v
100			mv *.tex,v text
101
102			cd s_under_dvlp
103			mkdir text figs
104			mv under_dvlp.tex,v text/top_section.tex,v
105			mv *.tex,v text
106			mv *.eps,v figs
107
108			----------------------------------------------------
109			step 2: download the new manual and check-in changes for new directory path.
110			(2010 Aug 27); see cvs-commit log messages
111			-------------------------------
112			step 3: remove old chapter dir:
113			-------
114			(to do soon, but might encounter some permission issues)
115			from orwell.csail.mit.edu:
116			cd /export/export-9/gcmpack/manual/
117			/bin/rm -rf part1 part2 part3 part4 part5 part6 part7 part8 under_dvlp
118			============================================================================