% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.4 2001/09/26 20:19:41 adcroft Exp $
% $Name:  $

\documentclass[12pt]{book}

\usepackage{amsfonts}
\usepackage{amsmath}
\usepackage{html}
\usepackage{epsfig}
\usepackage{graphics,subfigure}
\usepackage{array}
\usepackage{multirow}
\usepackage{fancyhdr}
\usepackage{psfrag}
%\usepackage{oldgerm}
% I commented the following because it introduced excessive white space
%\usepackage{palatcm}              % better PDF 

% page headers and footers
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\fancyhead{}
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\fancyhead[RE]{\slshape \leftmark}
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\fancyfoot[RO,LE]{ }
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% referencing
\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
\newcommand{\reftabno}[1]{\ref{tab:#1}}
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% stuff for psfrag
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% This allows numbering of subsubsections
\setcounter{secnumdepth}{3}
% This changes the the chapter title
%\renewcommand{\chaptername}{Section}

\usepackage{showlabels}


\begin{document}

\tableofcontents
\pagebreak

\part{The MIT GCM basics}

% Section: Overview
\input{part1/part1}
\pagebreak

% Section: Discretization and Algorithm
\input{part2/part2}
\pagebreak

% Section: Getting started
\input{part3/part3}
\pagebreak

% Section: Software Architecture
\input{part4/part4}
\pagebreak


\part{Adjoint of the MIT GCM}

% Section: Automatic Differentiation
\input{part5/part5}
\pagebreak


\part{Additional features}

% Section: Physical Packages
\input{part6/part6}
\pagebreak

% Section: Diagnostics
\input{part7/part7}
\pagebreak

% Section: ECCO Interface
\input{part8/part8}

\end{document}