/[MITgcm]/manual/manual.tex
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revision 1.24 by edhill, Mon Mar 22 02:08:30 2004 UTC revision 1.40 by edhill, Fri Jun 30 05:58:03 2006 UTC
# Line 1  Line 1 
1  % $Header$  % $Header$
2  % $Name$  % $Name$
3    
4  \documentclass[12pt]{book}  \documentclass[10pt]{book}
5    
6  %To help cross-reference  %To help cross-reference
7  %\usepackage{showlabels}  %\usepackage{showlabels}
# Line 11  Line 11 
11  \usepackage{html}  \usepackage{html}
12  \usepackage{hthtml}  \usepackage{hthtml}
13  \usepackage{graphicx}  \usepackage{graphicx}
14    \usepackage{rotating}
15    
16    % CNH playing around with page widths
17    \usepackage{anysize}
18    
19  %cnh%\usepackage{array}  %cnh%\usepackage{array}
20  %cnh%\usepackage{multirow}  %cnh%\usepackage{multirow}
# Line 21  Line 25 
25  %afe seems like these need to be long, sorry  %afe seems like these need to be long, sorry
26  \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}  \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}
27  \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}  \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}
28    \newcommand{\myhref}[2]{\htmladdnormallink{#2}{#1}}
29    
30  % afe  Commands to standardize typesetting  % afe  Commands to standardize typesetting
31  \newcommand{\file}[1]{\texttt{#1}}  \newcommand{\file}[1]{\texttt{#1}}
   
32  \newcommand{\sectiontitle}[1]{\textsl{#1}}  \newcommand{\sectiontitle}[1]{\textsl{#1}}
   
33  \newcommand{\code}[1]{\texttt{#1}}  \newcommand{\code}[1]{\texttt{#1}}
34    
35    %%  EH3 : try out the epsfig package
   
 %eh3 try out the epsfig package  
36  \usepackage[dvips]{epsfig}  \usepackage[dvips]{epsfig}
37  \def\scalefig#1{\epsfxsize #1\textwidth}  \def\scalefig#1{\epsfxsize #1\textwidth}
38    
39    %EH3% ==========================================================
40    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
41    %EH3%
42    %EH3%  Directions: To build the ``private'' or ``local-only''
43    %EH3%    version of this manual, then edit the following so
44    %EH3%    they appear as:
45    %EH3%
46    %EH3%    % \includecomment{versionprivate}
47    %EH3%    \excludecoment{versionprivate}
48    %EH3%
49    %EH3%    The default is to include everything which is:
50    %EH3%
51    %EH3%    \includecomment{versionprivate}
52    %EH3%    % \excludecoment{versionprivate}
53    
54    %\includecomment{versionprivate}
55    \excludecomment{versionprivate}
56    
57    %EH3%
58    %EH3%    To use this comment, simply bracket any part of the
59    %EH3%    manual with two lines that contain ONLY the following
60    %EH3%    pair:
61    %EH3%
62    %EH3%      \begin{versionprivate}
63    %EH3%      \end{versionprivate}
64    %EH3%
65    %EH3%    with NO additional comments or other commands on the
66    %EH3%    lines containing the \begin{...}\end{...} statements.
67    %EH3%
68    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
69    %EH3% ==========================================================
70    
71    
72  %ph%\usepackage{epsfig}  %ph%\usepackage{epsfig}
73  %ph%\usepackage{psfrag}  %ph%\usepackage{psfrag}
# Line 62  Line 95 
95  %aja%\gdef\harvardleft{[}  %aja%\gdef\harvardleft{[}
96  %aja%\gdef\harvardright{]}  %aja%\gdef\harvardright{]}
97  %aja%\bibpunct{[}{]}{,}{a}{}{,}  %aja%\bibpunct{[}{]}{,}{a}{}{,}
98  \bibliographystyle{plain}  %\bibliographystyle{plain}
99    %-jmc: try agu bib-style (give author names & year instead of just a number)
100    %% \usepackage[square]
101    \usepackage[square]{natbib}
102    \bibliographystyle{agu}
103    %% \bibliographystyle{aguurl}
104    
105  % referencing  % referencing
106  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
# Line 85  Line 123 
123  % This allows hyperlinks in PDF  % This allows hyperlinks in PDF
124  % hyperref package and colors for hyperref package  % hyperref package and colors for hyperref package
125  \usepackage{color}  \usepackage{color}
126  \usepackage[dvips]{hyperref}  \usepackage{hyperref}
127    %\usepackage[dvips]
128  \definecolor{darkgreen}{rgb}{0,0.4,0}  \definecolor{darkgreen}{rgb}{0,0.4,0}
129  \definecolor{darkblue}{rgb}{0,0,0.4}  \definecolor{darkblue}{rgb}{0,0,0.4}
130  \definecolor{darkred}{rgb}{0.5,0,0}  \definecolor{darkred}{rgb}{0.5,0,0}
# Line 115  Line 154 
154    
155  \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}  \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
156    
157    % Some definitions modified from the ones provided by Baylor
158    \def\BFKav#1{\overline{#1}}
159    \def\BFKpd#1#2{{\frac{\partial{#2}}{\partial{#1}}}}
160    \def\BFKpds#1#2{{\frac{\partial^2{#2}}{{\partial{#1}}^2}}}
161    \def\BFKDt#1{\frac{D{#1}}{Dt}}
162    \def\BFKaDt#1{\frac{\BFKav D{#1}}{\BFKav{Dt}}}
163    \def\BFKd#1{{\,\rm d#1}}
164    \def\BFKRo{{\rm Ro}}
165    \def\BFKRe{{\rm Re}}
166    \def\BFKFr{{\rm Fr}}
167    \def\BFKPr{{\rm Pr}}
168    \def\BFKMr{{M_{Ro}}}
169    \def\BFKtu{{\tilde u}}
170    \def\BFKtv{{\tilde v}}
171    \def\BFKatu{{\tilde {\BFKav u}}}
172    \def\BFKatv{{\tilde {\BFKav v}}}
173    \def\BFKlesssim{{<\atop\sim}}
174    
175    %  Definitions from EH3:
176    \def\CC{C\raise.3ex\hbox{{\footnotesize
177          +}}\raise.3ex\hbox{\footnotesize +}\ }
178    
179  \begin{document}  \begin{document}
180    
181  \bodytext{bgcolor="#FFFFFFFF"}  \bodytext{bgcolor="#FFFFFFFF"}
182    
183    \title{ \textsc{MITgcm User Manual} }
184    
185    \author{
186      John Marshall \and Alistair Adcroft \and Jean-Michel Campin
187      \and Patrick Heimbach \and Andrea Molod \and Stephanie Dutkiewicz
188      \and Helen Hill \and Martin Losch \and Baylor Fox-Kemper
189      \and Dimitris Menemenlis \and David Ferreira \and Ed Hill
190      \and Mick Follows \and Chris Hill \and Constantinos Evangelinos
191      \and Gael Forget
192      \\
193      \\
194      \\
195      MIT Department of EAPS  \\
196      77 Massachusetts Ave. \\
197      Cambridge, MA \ 02139-4307
198    }
199    
200    \date{August 19, 2004}
201    
202    \maketitle
203    
204  \tableofcontents  \tableofcontents
205  %\pagebreak  %\pagebreak
206    
# Line 155  Line 236 
236  \input{part6/part6}  \input{part6/part6}
237  %\pagebreak  %\pagebreak
238    
239  % Section: Diagnostics  % Section: Pre-processing and Post-processing Tools
240  \input{part7/part7}  \input{part7/part7}
241  %\pagebreak  %\pagebreak
242    
# Line 171  Line 252 
252  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
253  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
254  %aja%\bibliography{\BIBPATH/manual_references}  %aja%\bibliography{\BIBPATH/manual_references}
255  \bibliography{manual_references}  \bibliography{manual_references,baylor_biblio}
256    
257  \end{document}  \end{document}
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