--- manual/manual.tex	2005/07/14 17:18:07	1.29
+++ manual/manual.tex	2005/12/16 06:26:09	1.36
@@ -1,4 +1,4 @@
-% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.29 2005/07/14 17:18:07 cnh Exp $
+% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.36 2005/12/16 06:26:09 edhill Exp $
 % $Name:  $
 
 \documentclass[10pt]{book}
@@ -11,6 +11,10 @@
 \usepackage{html}
 \usepackage{hthtml}
 \usepackage{graphicx}
+\usepackage{rotating}
+
+% CNH playing around with page widths
+\usepackage{anysize}
 
 %cnh%\usepackage{array}
 %cnh%\usepackage{multirow}
@@ -90,7 +94,10 @@
 %aja%\gdef\harvardleft{[}
 %aja%\gdef\harvardright{]}
 %aja%\bibpunct{[}{]}{,}{a}{}{,}
-\bibliographystyle{plain}
+%\bibliographystyle{plain}
+%-jmc: try agu bib-style (give author names & year instead of just a number)
+\usepackage[square]{natbib}
+\bibliographystyle{agu}
 
 % referencing
 %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
@@ -113,6 +120,7 @@
 % This allows hyperlinks in PDF
 % hyperref package and colors for hyperref package 
 \usepackage{color} 
+\usepackage{hyperref} 
 %\usepackage[dvips]
 \definecolor{darkgreen}{rgb}{0,0.4,0} 
 \definecolor{darkblue}{rgb}{0,0,0.4} 
@@ -143,6 +151,23 @@
 
 \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
 
+% Some definitions modified from the ones provided by Baylor
+\def\BFKav#1{\overline{#1}}
+\def\BFKpd#1#2{{\frac{\partial{#2}}{\partial{#1}}}}
+\def\BFKpds#1#2{{\frac{\partial^2{#2}}{{\partial{#1}}^2}}}
+\def\BFKDt#1{\frac{D{#1}}{Dt}}
+\def\BFKaDt#1{\frac{\BFKav D{#1}}{\BFKav{Dt}}}
+\def\BFKd#1{{\,\rm d#1}}
+\def\BFKRo{{\rm Ro}}
+\def\BFKRe{{\rm Re}}
+\def\BFKFr{{\rm Fr}}
+\def\BFKPr{{\rm Pr}}
+\def\BFKMr{{M_{Ro}}}
+\def\BFKtu{{\tilde u}}
+\def\BFKtv{{\tilde v}}
+\def\BFKatu{{\tilde {\BFKav u}}}
+\def\BFKatv{{\tilde {\BFKav v}}}
+\def\BFKlesssim{{<\atop\sim}}
 
 \begin{document}
 
@@ -183,7 +208,7 @@
 \input{part6/part6}
 %\pagebreak
 
-% Section: Diagnostics
+% Section: Pre-processing and Post-processing Tools
 \input{part7/part7}
 %\pagebreak
 
@@ -199,6 +224,6 @@
 %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
 \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
 %aja%\bibliography{\BIBPATH/manual_references}
-\bibliography{manual_references}
+\bibliography{manual_references,baylor_biblio}
 
 \end{document}