/[MITgcm]/manual/manual.tex
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revision 1.15 by edhill, Wed Jul 30 13:42:52 2003 UTC revision 1.34 by molod, Wed Aug 3 17:56:15 2005 UTC
# Line 1  Line 1 
1  % $Header$  % $Header$
2  % $Name$  % $Name$
3    
4  \documentclass[12pt]{book}  \documentclass[10pt]{book}
5    
6  %To help cross-reference  %To help cross-reference
7  %\usepackage{showlabels}  %\usepackage{showlabels}
# Line 9  Line 9 
9  %aja%\usepackage{amsfonts}  %aja%\usepackage{amsfonts}
10  \usepackage{amsmath}  \usepackage{amsmath}
11  \usepackage{html}  \usepackage{html}
12    \usepackage{hthtml}
13  \usepackage{graphicx}  \usepackage{graphicx}
14    \usepackage{rotating}
15    
16    % CNH playing around with page widths
17    \usepackage{anysize}
18    
19  %cnh%\usepackage{array}  %cnh%\usepackage{array}
20  %cnh%\usepackage{multirow}  %cnh%\usepackage{multirow}
21    
22  % Command to reference entries in either "code" or "names"  %eh3  Commands to reference either files or symbols within the "HTML-ized"
23  % directories of browseable code tree.  %eh3  ("vdb") code.
24  \newcommand{\proclink}[2]{  %eh3  
25  \htmladdnormallink{\em #1()}{../../code_reference/vdb/names/#2_docref.html}  %afe seems like these need to be long, sorry
26  }  \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}
27  \newcommand{\varlink}[2]{  \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}
28  \htmladdnormallink{\bf \tt #1}{../../code_reference/vdb/names/#2_docref.html}  
29  }  % afe  Commands to standardize typesetting
30    \newcommand{\file}[1]{\texttt{#1}}
31    \newcommand{\sectiontitle}[1]{\textsl{#1}}
32    \newcommand{\code}[1]{\texttt{#1}}
33    
34    %%  EH3 : try out the epsfig package
35    \usepackage[dvips]{epsfig}
36    \def\scalefig#1{\epsfxsize #1\textwidth}
37    
38    %EH3% ==========================================================
39    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
40    %EH3%
41    %EH3%  Directions: To build the ``private'' or ``local-only''
42    %EH3%    version of this manual, then edit the following so
43    %EH3%    they appear as:
44    %EH3%
45    %EH3%    % \includecomment{versionprivate}
46    %EH3%    \excludecoment{versionprivate}
47    %EH3%
48    %EH3%    The default is to include everything which is:
49    %EH3%
50    %EH3%    \includecomment{versionprivate}
51    %EH3%    % \excludecoment{versionprivate}
52    
53    %\includecomment{versionprivate}
54    \excludecomment{versionprivate}
55    
56    %EH3%
57    %EH3%    To use this comment, simply bracket any part of the
58    %EH3%    manual with two lines that contain ONLY the following
59    %EH3%    pair:
60    %EH3%
61    %EH3%      \begin{versionprivate}
62    %EH3%      \end{versionprivate}
63    %EH3%
64    %EH3%    with NO additional comments or other commands on the
65    %EH3%    lines containing the \begin{...}\end{...} statements.
66    %EH3%
67    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
68    %EH3% ==========================================================
69    
70    
71  %ph%\usepackage{epsfig}  %ph%\usepackage{epsfig}
# Line 51  Line 94 
94  %aja%\gdef\harvardleft{[}  %aja%\gdef\harvardleft{[}
95  %aja%\gdef\harvardright{]}  %aja%\gdef\harvardright{]}
96  %aja%\bibpunct{[}{]}{,}{a}{}{,}  %aja%\bibpunct{[}{]}{,}{a}{}{,}
97  \bibliographystyle{plain}  %\bibliographystyle{plain}
98    %-jmc: try agu bib-style (give author names & year instead of just a number)
99    \usepackage[square]{natbib}
100    \bibliographystyle{agu}
101    
102  % referencing  % referencing
103  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
# Line 74  Line 120 
120  % This allows hyperlinks in PDF  % This allows hyperlinks in PDF
121  % hyperref package and colors for hyperref package  % hyperref package and colors for hyperref package
122  \usepackage{color}  \usepackage{color}
123  \usepackage[dvips]{hyperref}  \usepackage{hyperref}
124    %\usepackage[dvips]
125  \definecolor{darkgreen}{rgb}{0,0.4,0}  \definecolor{darkgreen}{rgb}{0,0.4,0}
126  \definecolor{darkblue}{rgb}{0,0,0.4}  \definecolor{darkblue}{rgb}{0,0,0.4}
127  \definecolor{darkred}{rgb}{0.5,0,0}  \definecolor{darkred}{rgb}{0.5,0,0}
# Line 89  Line 136 
136      non-hydrostatic, finite volume, inverse methods, adjoint method}      non-hydrostatic, finite volume, inverse methods, adjoint method}
137    }    }
138    
139    % Some definitions (AMM)
140    \def\p#1{{\partial \over {\partial #1}}}
141    \def\pp#1#2{{\partial #1 \over {\partial #2}}}
142    \def\dd#1#2{{d #1 \over {d #2}}}
143    \def\bq{\begin{equation}}
144    \def\bqa{\begin{eqnarray}}
145    \def\eq{\end{equation}}
146    \def\eqa{\end{eqnarray}}
147    
148    \def\h{ {1\over2} }
149    \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
150    \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
151    
152    \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
153    
154    
155  \begin{document}  \begin{document}
156    
157  \bodytext{bgcolor="#FFFFFFFF"}  \bodytext{bgcolor="#FFFFFFFF"}
# Line 128  Line 191 
191  \input{part6/part6}  \input{part6/part6}
192  %\pagebreak  %\pagebreak
193    
194  % Section: Diagnostics  % Section: Pre-processing and Post-processing Tools
195  \input{part7/part7}  \input{part7/part7}
196  %\pagebreak  %\pagebreak
197    
# Line 136  Line 199 
199  \input{part8/part8}  \input{part8/part8}
200  %\pagebreak  %\pagebreak
201    
202    % Section: Model Uses
203    \input{model_uses}
204    %\pagebreak
205    
206  % Section: References:  % Section: References:
207  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
208  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
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