25 |
%afe seems like these need to be long, sorry |
%afe seems like these need to be long, sorry |
26 |
\newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} |
\newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} |
27 |
\newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} |
\newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} |
28 |
|
\newcommand{\myhref}[2]{\htmladdnormallink{#2}{#1}} |
29 |
|
|
30 |
% afe Commands to standardize typesetting |
% afe Commands to standardize typesetting |
31 |
\newcommand{\file}[1]{\texttt{#1}} |
\newcommand{\file}[1]{\texttt{#1}} |
97 |
%aja%\bibpunct{[}{]}{,}{a}{}{,} |
%aja%\bibpunct{[}{]}{,}{a}{}{,} |
98 |
%\bibliographystyle{plain} |
%\bibliographystyle{plain} |
99 |
%-jmc: try agu bib-style (give author names & year instead of just a number) |
%-jmc: try agu bib-style (give author names & year instead of just a number) |
100 |
|
%% \usepackage[square] |
101 |
\usepackage[square]{natbib} |
\usepackage[square]{natbib} |
102 |
\bibliographystyle{agu} |
\bibliographystyle{agu} |
103 |
|
%% \bibliographystyle{aguurl} |
104 |
|
|
105 |
% referencing |
% referencing |
106 |
%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
154 |
|
|
155 |
\def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage} |
\def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage} |
156 |
|
|
157 |
|
% Some definitions modified from the ones provided by Baylor |
158 |
|
\def\BFKav#1{\overline{#1}} |
159 |
|
\def\BFKpd#1#2{{\frac{\partial{#2}}{\partial{#1}}}} |
160 |
|
\def\BFKpds#1#2{{\frac{\partial^2{#2}}{{\partial{#1}}^2}}} |
161 |
|
\def\BFKDt#1{\frac{D{#1}}{Dt}} |
162 |
|
\def\BFKaDt#1{\frac{\BFKav D{#1}}{\BFKav{Dt}}} |
163 |
|
\def\BFKd#1{{\,\rm d#1}} |
164 |
|
\def\BFKRo{{\rm Ro}} |
165 |
|
\def\BFKRe{{\rm Re}} |
166 |
|
\def\BFKFr{{\rm Fr}} |
167 |
|
\def\BFKPr{{\rm Pr}} |
168 |
|
\def\BFKMr{{M_{Ro}}} |
169 |
|
\def\BFKtu{{\tilde u}} |
170 |
|
\def\BFKtv{{\tilde v}} |
171 |
|
\def\BFKatu{{\tilde {\BFKav u}}} |
172 |
|
\def\BFKatv{{\tilde {\BFKav v}}} |
173 |
|
\def\BFKlesssim{{<\atop\sim}} |
174 |
|
|
175 |
\begin{document} |
\begin{document} |
176 |
|
|
177 |
\bodytext{bgcolor="#FFFFFFFF"} |
\bodytext{bgcolor="#FFFFFFFF"} |
178 |
|
|
179 |
|
\title{ \textsc{MITgcm User Manual} } |
180 |
|
|
181 |
|
\author{ |
182 |
|
John Marshall \and Alistair Adcroft \and Jean-Michel Campin |
183 |
|
\and Patrick Heimbach \and Andrea Molod \and Stephanie Dutkiewicz |
184 |
|
\and Helen Hill \and Martin Losch \and Baylor Fox-Kemper |
185 |
|
\and Dimitris Menemenlis \and David Ferreira \and Ed Hill |
186 |
|
\and Mick Follows \and Chris Hill \and Constantinos Evangelinos |
187 |
|
\and Gael Forget |
188 |
|
\\ |
189 |
|
\\ |
190 |
|
\\ |
191 |
|
MIT Department of EAPS \\ |
192 |
|
77 Massachusetts Ave. \\ |
193 |
|
Cambridge, MA \ 02139-4307 |
194 |
|
} |
195 |
|
|
196 |
|
\date{August 19, 2004} |
197 |
|
|
198 |
|
\maketitle |
199 |
|
|
200 |
\tableofcontents |
\tableofcontents |
201 |
%\pagebreak |
%\pagebreak |
202 |
|
|
207 |
%\pagebreak |
%\pagebreak |
208 |
|
|
209 |
% Section: Discretization and Algorithm |
% Section: Discretization and Algorithm |
210 |
\input{part2/part2} |
%% \input{part2/part2} |
211 |
%\pagebreak |
%\pagebreak |
212 |
|
|
213 |
% Section: Getting started |
% Section: Getting started |
214 |
\input{part3/part3} |
%% \input{part3/part3} |
215 |
%\pagebreak |
%\pagebreak |
216 |
|
|
217 |
% Section: Software Architecture |
% Section: Software Architecture |
218 |
\input{part4/part4} |
%% \input{part4/part4} |
219 |
%\pagebreak |
%\pagebreak |
220 |
|
|
221 |
|
|
222 |
%\part{Adjoint of the MIT GCM} |
%\part{Adjoint of the MIT GCM} |
223 |
|
|
224 |
% Section: Automatic Differentiation |
% Section: Automatic Differentiation |
225 |
\input{part5/part5} |
%% \input{part5/part5} |
226 |
%\pagebreak |
%\pagebreak |
227 |
|
|
228 |
|
|
229 |
%\part{Additional features} |
%\part{Additional features} |
230 |
|
|
231 |
% Section: Physical Packages |
% Section: Physical Packages |
232 |
\input{part6/part6} |
%% \input{part6/part6} |
233 |
%\pagebreak |
%\pagebreak |
234 |
|
|
235 |
% Section: Pre-processing and Post-processing Tools |
% Section: Pre-processing and Post-processing Tools |
236 |
\input{part7/part7} |
%% \input{part7/part7} |
237 |
%\pagebreak |
%\pagebreak |
238 |
|
|
239 |
% Section: ECCO |
% Section: ECCO |
240 |
\input{part8/part8} |
%% \input{part8/part8} |
241 |
%\pagebreak |
%\pagebreak |
242 |
|
|
243 |
% Section: Model Uses |
% Section: Model Uses |
244 |
\input{model_uses} |
%% \input{model_uses} |
245 |
%\pagebreak |
%\pagebreak |
246 |
|
|
247 |
% Section: References: |
% Section: References: |