MITgcm/manual/manual.tex

% $Header: /u/u0/gcmpack/mitgcmdoc/manual.tex,v 1.6 2001/10/05 22:22:20 heimbach Exp $
% $Name:  $

\documentclass[12pt]{book}

\usepackage{amsfonts}
\usepackage{amsmath}
\usepackage{html}
\usepackage{epsfig}
\usepackage{graphics,subfigure}
\usepackage{array}
\usepackage{multirow}
\usepackage{fancyhdr}
\usepackage{psfrag}
%\usepackage{oldgerm}
% I commented the following because it introduced excessive white space
%\usepackage{palatcm}              % better PDF 

% page headers and footers
%\pagestyle{fancy}
\fancyhead{}
\fancyhead[LO]{\slshape \rightmark}
\fancyhead[RE]{\slshape \leftmark}
\fancyhead[RO,LE]{\thepage}
\fancyfoot[CO,CE]{\today}
\fancyfoot[RO,LE]{ }
\renewcommand{\headrulewidth}{0.4pt}
\renewcommand{\footrulewidth}{0.4pt}

% bibtex stuff
\newcommand{\BIBPATH}{.}
\usepackage{natbib}
\bibliographystyle{\BIBPATH/jmr_my}
\gdef\harvardleft{[}
\gdef\harvardright{]}
\bibpunct{[}{]}{,}{a}{}{,}

% referencing
\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
\newcommand{\reftabno}[1]{\ref{tab:#1}}
\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
\newcommand{\reffigno}[1]{\ref{fig:#1}}

% stuff for psfrag
\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}

% This allows numbering of subsubsections
\setcounter{secnumdepth}{3}
% This changes the the chapter title
%\renewcommand{\chaptername}{Section}

\usepackage{showlabels}


\begin{document}

\tableofcontents
\pagebreak

\part{MIT GCM basics}

% Section: Overview
\input{part1/part1}
\pagebreak

% Section: Discretization and Algorithm
\input{part2/part2}
\pagebreak

% Section: Getting started
\input{part3/part3}
\pagebreak

% Section: Software Architecture
\input{part4/part4}
\pagebreak


\part{Adjoint of the MIT GCM}

% Section: Automatic Differentiation
\input{part5/part5}
\pagebreak


\part{Additional features}

% Section: Physical Packages
\input{part6/part6}
\pagebreak

% Section: Diagnostics
\input{part7/part7}
\pagebreak

% Section: ECCO Interface
\input{part8/part8}
\pagebreak

% Section: References:
\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
\bibliography{\BIBPATH/manual_references}

\end{document}
1	% $Header: /u/u0/gcmpack/mitgcmdoc/manual.tex,v 1.6 2001/10/05 22:22:20 heimbach Exp $
2	% $Name: $
3
4	\documentclass[12pt]{book}
5
6	\usepackage{amsfonts}
7	\usepackage{amsmath}
8	\usepackage{html}
9	\usepackage{epsfig}
10	\usepackage{graphics,subfigure}
11	\usepackage{array}
12	\usepackage{multirow}
13	\usepackage{fancyhdr}
14	\usepackage{psfrag}
15	%\usepackage{oldgerm}
16	% I commented the following because it introduced excessive white space
17	%\usepackage{palatcm} % better PDF
18
19	% page headers and footers
20	%\pagestyle{fancy}
21	\fancyhead{}
22	\fancyhead[LO]{\slshape \rightmark}
23	\fancyhead[RE]{\slshape \leftmark}
24	\fancyhead[RO,LE]{\thepage}
25	\fancyfoot[CO,CE]{\today}
26	\fancyfoot[RO,LE]{ }
27	\renewcommand{\headrulewidth}{0.4pt}
28	\renewcommand{\footrulewidth}{0.4pt}
29
30	% bibtex stuff
31	\newcommand{\BIBPATH}{.}
32	\usepackage{natbib}
33	\bibliographystyle{\BIBPATH/jmr_my}
34	\gdef\harvardleft{[}
35	\gdef\harvardright{]}
36	\bibpunct{[}{]}{,}{a}{}{,}
37
38	% referencing
39	\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
40	\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
41	\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
42	\newcommand{\reftabno}[1]{\ref{tab:#1}}
43	\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
44	\newcommand{\reffigno}[1]{\ref{fig:#1}}
45
46	% stuff for psfrag
47	\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
48	\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
49
50	% This allows numbering of subsubsections
51	\setcounter{secnumdepth}{3}
52	% This changes the the chapter title
53	%\renewcommand{\chaptername}{Section}
54
55	\usepackage{showlabels}
56
57
58	\begin{document}
59
60	\tableofcontents
61	\pagebreak
62
63	\part{MIT GCM basics}
64
65	% Section: Overview
66	\input{part1/part1}
67	\pagebreak
68
69	% Section: Discretization and Algorithm
70	\input{part2/part2}
71	\pagebreak
72
73	% Section: Getting started
74	\input{part3/part3}
75	\pagebreak
76
77	% Section: Software Architecture
78	\input{part4/part4}
79	\pagebreak
80
81
82	\part{Adjoint of the MIT GCM}
83
84	% Section: Automatic Differentiation
85	\input{part5/part5}
86	\pagebreak
87
88
89	\part{Additional features}
90
91	% Section: Physical Packages
92	\input{part6/part6}
93	\pagebreak
94
95	% Section: Diagnostics
96	\input{part7/part7}
97	\pagebreak
98
99	% Section: ECCO Interface
100	\input{part8/part8}
101	\pagebreak
102
103	% Section: References:
104	\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
105	\addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
106	\bibliography{\BIBPATH/manual_references}
107
108	\end{document}