| 25 |
%afe seems like these need to be long, sorry |
%afe seems like these need to be long, sorry |
| 26 |
\newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} |
\newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} |
| 27 |
\newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} |
\newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} |
| 28 |
|
\newcommand{\myhref}[2]{\htmladdnormallink{#2}{#1}} |
| 29 |
|
|
| 30 |
% afe Commands to standardize typesetting |
% afe Commands to standardize typesetting |
| 31 |
\newcommand{\file}[1]{\texttt{#1}} |
\newcommand{\file}[1]{\texttt{#1}} |
| 97 |
%aja%\bibpunct{[}{]}{,}{a}{}{,} |
%aja%\bibpunct{[}{]}{,}{a}{}{,} |
| 98 |
%\bibliographystyle{plain} |
%\bibliographystyle{plain} |
| 99 |
%-jmc: try agu bib-style (give author names & year instead of just a number) |
%-jmc: try agu bib-style (give author names & year instead of just a number) |
| 100 |
|
%% \usepackage[square] |
| 101 |
\usepackage[square]{natbib} |
\usepackage[square]{natbib} |
| 102 |
\bibliographystyle{agu} |
\bibliographystyle{agu} |
| 103 |
|
%% \bibliographystyle{aguurl} |
| 104 |
|
|
| 105 |
% referencing |
% referencing |
| 106 |
%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
| 172 |
\def\BFKatv{{\tilde {\BFKav v}}} |
\def\BFKatv{{\tilde {\BFKav v}}} |
| 173 |
\def\BFKlesssim{{<\atop\sim}} |
\def\BFKlesssim{{<\atop\sim}} |
| 174 |
|
|
| 175 |
|
% Definitions from EH3: |
| 176 |
|
\def\CC{C\raise.3ex\hbox{{\footnotesize |
| 177 |
|
+}}\raise.3ex\hbox{\footnotesize +}\ } |
| 178 |
|
|
| 179 |
\begin{document} |
\begin{document} |
| 180 |
|
|
| 181 |
\bodytext{bgcolor="#FFFFFFFF"} |
\bodytext{bgcolor="#FFFFFFFF"} |
| 183 |
\title{ \textsc{MITgcm User Manual} } |
\title{ \textsc{MITgcm User Manual} } |
| 184 |
|
|
| 185 |
\author{ |
\author{ |
| 186 |
John Marshall \and Alistair Adcroft \and Jean-Michel Campin |
Alistair Adcroft \and Jean-Michel Campin \and Stephanie Dutkiewicz |
| 187 |
\and Patrick Heimbach \and Andrea Molod \and Stephanie Dutkiewicz |
\and Constantinos Evangelinos \and David Ferreira %\and Mick Follows |
| 188 |
\and Helen Hill \and Martin Losch \and Baylor Fox-Kemper |
\and Gael Forget \and Baylor Fox-Kemper \and Patrick Heimbach |
| 189 |
\and Dimitris Menemenlis \and David Ferreira \and Ed Hill |
\and Chris Hill \and Ed Hill \and Helen Hill |
| 190 |
\and Mick Follows \and Chris Hill \and Constantinos Evangelinos |
\and Oliver Jahn \and Martin Losch \and John Marshall |
| 191 |
\and Gael Forget |
\and Guillaume Maze \and Dimitris Menemenlis \and Andrea Molod |
| 192 |
\\ |
\\ |
| 193 |
\\ |
\\ |
| 194 |
\\ |
\\ |
| 197 |
Cambridge, MA \ 02139-4307 |
Cambridge, MA \ 02139-4307 |
| 198 |
} |
} |
| 199 |
|
|
| 200 |
\date{August 19, 2004} |
%\date{August 19, 2004} |
| 201 |
|
\date{\today} |
| 202 |
|
|
| 203 |
\maketitle |
\maketitle |
| 204 |
|
|
| 208 |
%\part{MIT GCM basics} |
%\part{MIT GCM basics} |
| 209 |
|
|
| 210 |
% Section: Overview |
% Section: Overview |
| 211 |
\input{part1/part1} |
\input{s_overview/text/top_section} |
| 212 |
%\pagebreak |
%\pagebreak |
| 213 |
|
|
| 214 |
% Section: Discretization and Algorithm |
% Section: Discretization and Algorithm |
| 215 |
\input{part2/part2} |
\input{s_algorithm/text/top_section} |
| 216 |
%\pagebreak |
%\pagebreak |
| 217 |
|
|
| 218 |
% Section: Getting started |
% Section: Getting started |
| 219 |
\input{part3/part3} |
\input{s_getstarted/text/top_section} |
| 220 |
%\pagebreak |
%\pagebreak |
| 221 |
|
|
| 222 |
% Section: Software Architecture |
% Section: Software Architecture |
| 223 |
\input{part4/part4} |
\input{s_software/text/top_section} |
| 224 |
%\pagebreak |
%\pagebreak |
| 225 |
|
|
| 226 |
|
|
| 227 |
%\part{Adjoint of the MIT GCM} |
%\part{Adjoint of the MIT GCM} |
| 228 |
|
|
| 229 |
% Section: Automatic Differentiation |
% Section: Automatic Differentiation |
| 230 |
\input{part5/part5} |
\input{s_autodiff/text/top_section} |
| 231 |
%\pagebreak |
%\pagebreak |
| 232 |
|
|
| 233 |
|
|
| 234 |
%\part{Additional features} |
%\part{Additional features} |
| 235 |
|
|
| 236 |
% Section: Physical Packages |
% Section: Physical Packages |
| 237 |
\input{part6/part6} |
\input{s_phys_pkgs/text/top_section} |
| 238 |
%\pagebreak |
%\pagebreak |
| 239 |
|
|
| 240 |
% Section: Pre-processing and Post-processing Tools |
% Section: Pre-processing and Post-processing Tools |
| 241 |
\input{part7/part7} |
\input{s_outp_pkgs/text/top_section} |
| 242 |
%\pagebreak |
%\pagebreak |
| 243 |
|
|
| 244 |
% Section: ECCO |
% Section: ECCO |
| 245 |
\input{part8/part8} |
\input{s_ecco/text/top_section} |
| 246 |
%\pagebreak |
%\pagebreak |
| 247 |
|
|
| 248 |
|
% Section: Under Development |
| 249 |
|
\input{s_under_dvlp/text/top_section} |
| 250 |
|
|
| 251 |
% Section: Model Uses |
% Section: Model Uses |
| 252 |
\input{model_uses} |
\input{model_uses} |
| 253 |
%\pagebreak |
%\pagebreak |
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