--- manual/manual.tex	2010/08/24 22:47:48	1.43
+++ manual/manual.tex	2010/08/27 13:31:32	1.44
@@ -1,4 +1,4 @@
-% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.43 2010/08/24 22:47:48 jmc Exp $
+% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.44 2010/08/27 13:31:32 jmc Exp $
 % $Name:  $
 
 \documentclass[10pt]{book}
@@ -208,45 +208,45 @@
 %\part{MIT GCM basics}
 
 % Section: Overview
-\input{part1/part1}
+\input{s_overview/text/top_section}
 %\pagebreak
 
 % Section: Discretization and Algorithm
-\input{part2/part2}
+\input{s_algorithm/text/top_section}
 %\pagebreak
 
 % Section: Getting started
-\input{part3/part3}
+\input{s_getstarted/text/top_section}
 %\pagebreak
 
 % Section: Software Architecture
-\input{part4/part4}
+\input{s_software/text/top_section}
 %\pagebreak
 
 
 %\part{Adjoint of the MIT GCM}
 
 % Section: Automatic Differentiation
-\input{part5/part5}
+\input{s_autodiff/text/top_section}
 %\pagebreak
 
 
 %\part{Additional features}
 
 % Section: Physical Packages
-\input{part6/part6}
+\input{s_phys_pkgs/text/top_section}
 %\pagebreak
 
 % Section: Pre-processing and Post-processing Tools
-\input{part7/part7}
+\input{s_outp_pkgs/text/top_section}
 %\pagebreak
 
 % Section: ECCO
-\input{part8/part8}
+\input{s_ecco/text/top_section}
 %\pagebreak
 
 % Section: Under Development
-\input{under_dvlp/under_dvlp}
+\input{s_under_dvlp/text/top_section}
 
 % Section: Model Uses
 \input{model_uses}