| 25 | %afe seems like these need to be long, sorry | %afe seems like these need to be long, sorry | 
| 26 | \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} | \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} | 
| 27 | \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} | \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} | 
| 28 |  | \newcommand{\myhref}[2]{\htmladdnormallink{#2}{#1}} | 
| 29 |  |  | 
| 30 | % afe  Commands to standardize typesetting | % afe  Commands to standardize typesetting | 
| 31 | \newcommand{\file}[1]{\texttt{#1}} | \newcommand{\file}[1]{\texttt{#1}} | 
| 97 | %aja%\bibpunct{[}{]}{,}{a}{}{,} | %aja%\bibpunct{[}{]}{,}{a}{}{,} | 
| 98 | %\bibliographystyle{plain} | %\bibliographystyle{plain} | 
| 99 | %-jmc: try agu bib-style (give author names & year instead of just a number) | %-jmc: try agu bib-style (give author names & year instead of just a number) | 
| 100 |  | %% \usepackage[square] | 
| 101 | \usepackage[square]{natbib} | \usepackage[square]{natbib} | 
| 102 | \bibliographystyle{agu} | \bibliographystyle{agu} | 
| 103 |  | %% \bibliographystyle{aguurl} | 
| 104 |  |  | 
| 105 | % referencing | % referencing | 
| 106 | %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} | %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} | 
| 154 |  |  | 
| 155 | \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage} | \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage} | 
| 156 |  |  | 
| 157 |  | % Some definitions modified from the ones provided by Baylor | 
| 158 |  | \def\BFKav#1{\overline{#1}} | 
| 159 |  | \def\BFKpd#1#2{{\frac{\partial{#2}}{\partial{#1}}}} | 
| 160 |  | \def\BFKpds#1#2{{\frac{\partial^2{#2}}{{\partial{#1}}^2}}} | 
| 161 |  | \def\BFKDt#1{\frac{D{#1}}{Dt}} | 
| 162 |  | \def\BFKaDt#1{\frac{\BFKav D{#1}}{\BFKav{Dt}}} | 
| 163 |  | \def\BFKd#1{{\,\rm d#1}} | 
| 164 |  | \def\BFKRo{{\rm Ro}} | 
| 165 |  | \def\BFKRe{{\rm Re}} | 
| 166 |  | \def\BFKFr{{\rm Fr}} | 
| 167 |  | \def\BFKPr{{\rm Pr}} | 
| 168 |  | \def\BFKMr{{M_{Ro}}} | 
| 169 |  | \def\BFKtu{{\tilde u}} | 
| 170 |  | \def\BFKtv{{\tilde v}} | 
| 171 |  | \def\BFKatu{{\tilde {\BFKav u}}} | 
| 172 |  | \def\BFKatv{{\tilde {\BFKav v}}} | 
| 173 |  | \def\BFKlesssim{{<\atop\sim}} | 
| 174 |  |  | 
| 175 |  | %  Definitions from EH3: | 
| 176 |  | \def\CC{C\raise.3ex\hbox{{\footnotesize | 
| 177 |  | +}}\raise.3ex\hbox{\footnotesize +}\ } | 
| 178 |  |  | 
| 179 | \begin{document} | \begin{document} | 
| 180 |  |  | 
| 181 | \bodytext{bgcolor="#FFFFFFFF"} | \bodytext{bgcolor="#FFFFFFFF"} | 
| 182 |  |  | 
| 183 |  | \title{ \textsc{MITgcm User Manual} } | 
| 184 |  |  | 
| 185 |  | \author{ | 
| 186 |  | Alistair Adcroft \and Jean-Michel Campin \and Stephanie Dutkiewicz | 
| 187 |  | \and Constantinos Evangelinos \and David Ferreira %\and Mick Follows | 
| 188 |  | \and Gael Forget \and Baylor Fox-Kemper \and Patrick Heimbach | 
| 189 |  | \and Chris Hill \and Ed Hill \and Helen Hill | 
| 190 |  | \and Oliver Jahn \and Martin Losch \and John Marshall | 
| 191 |  | \and Guillaume Maze \and Dimitris Menemenlis \and Andrea Molod | 
| 192 |  | \\ | 
| 193 |  | \\ | 
| 194 |  | \\ | 
| 195 |  | MIT Department of EAPS  \\ | 
| 196 |  | 77 Massachusetts Ave. \\ | 
| 197 |  | Cambridge, MA \ 02139-4307 | 
| 198 |  | } | 
| 199 |  |  | 
| 200 |  | %\date{August 19, 2004} | 
| 201 |  | \date{\today} | 
| 202 |  |  | 
| 203 |  | \maketitle | 
| 204 |  |  | 
| 205 | \tableofcontents | \tableofcontents | 
| 206 | %\pagebreak | %\pagebreak | 
| 207 |  |  | 
| 253 | %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} | %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} | 
| 254 | \addcontentsline{toc}{chapter}{BIBLIOGRAPHY} | \addcontentsline{toc}{chapter}{BIBLIOGRAPHY} | 
| 255 | %aja%\bibliography{\BIBPATH/manual_references} | %aja%\bibliography{\BIBPATH/manual_references} | 
| 256 | \bibliography{manual_references} | \bibliography{manual_references,baylor_biblio} | 
| 257 |  |  | 
| 258 | \end{document} | \end{document} |