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\usepackage{html} |
\usepackage{html} |
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\usepackage{hthtml} |
\usepackage{hthtml} |
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\usepackage{graphicx} |
\usepackage{graphicx} |
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\usepackage{rotating} |
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% CNH playing around with page widths |
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\usepackage{anysize} |
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%cnh%\usepackage{array} |
%cnh%\usepackage{array} |
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%cnh%\usepackage{multirow} |
%cnh%\usepackage{multirow} |
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%afe seems like these need to be long, sorry |
%afe seems like these need to be long, sorry |
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\newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} |
\newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} |
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\newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} |
\newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} |
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\newcommand{\myhref}[2]{\htmladdnormallink{#2}{#1}} |
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% afe Commands to standardize typesetting |
% afe Commands to standardize typesetting |
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\newcommand{\file}[1]{\texttt{#1}} |
\newcommand{\file}[1]{\texttt{#1}} |
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%aja%\bibpunct{[}{]}{,}{a}{}{,} |
%aja%\bibpunct{[}{]}{,}{a}{}{,} |
| 98 |
%\bibliographystyle{plain} |
%\bibliographystyle{plain} |
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%-jmc: try agu bib-style (give author names & year instead of just a number) |
%-jmc: try agu bib-style (give author names & year instead of just a number) |
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|
%% \usepackage[square] |
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\usepackage[square]{natbib} |
\usepackage[square]{natbib} |
| 102 |
\bibliographystyle{agu} |
\bibliographystyle{agu} |
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%% \bibliographystyle{aguurl} |
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|
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% referencing |
% referencing |
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%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
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|
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\def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage} |
\def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage} |
| 156 |
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|
| 157 |
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% Some definitions modified from the ones provided by Baylor |
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\def\BFKav#1{\overline{#1}} |
| 159 |
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\def\BFKpd#1#2{{\frac{\partial{#2}}{\partial{#1}}}} |
| 160 |
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\def\BFKpds#1#2{{\frac{\partial^2{#2}}{{\partial{#1}}^2}}} |
| 161 |
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\def\BFKDt#1{\frac{D{#1}}{Dt}} |
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\def\BFKaDt#1{\frac{\BFKav D{#1}}{\BFKav{Dt}}} |
| 163 |
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\def\BFKd#1{{\,\rm d#1}} |
| 164 |
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\def\BFKRo{{\rm Ro}} |
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\def\BFKRe{{\rm Re}} |
| 166 |
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\def\BFKFr{{\rm Fr}} |
| 167 |
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\def\BFKPr{{\rm Pr}} |
| 168 |
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\def\BFKMr{{M_{Ro}}} |
| 169 |
|
\def\BFKtu{{\tilde u}} |
| 170 |
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\def\BFKtv{{\tilde v}} |
| 171 |
|
\def\BFKatu{{\tilde {\BFKav u}}} |
| 172 |
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\def\BFKatv{{\tilde {\BFKav v}}} |
| 173 |
|
\def\BFKlesssim{{<\atop\sim}} |
| 174 |
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| 175 |
\begin{document} |
\begin{document} |
| 176 |
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| 177 |
\bodytext{bgcolor="#FFFFFFFF"} |
\bodytext{bgcolor="#FFFFFFFF"} |
| 178 |
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|
| 179 |
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\title{ \textsc{MITgcm User Manual} } |
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|
| 181 |
|
\author{ |
| 182 |
|
John Marshall \and Alistair Adcroft \and Jean-Michel Campin |
| 183 |
|
\and Patrick Heimbach \and Andrea Molod \and Stephanie Dutkiewicz |
| 184 |
|
\and Helen Hill \and Martin Losch \and Baylor Fox-Kemper |
| 185 |
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\and Dimitris Menemenlis \and David Ferreira \and Ed Hill |
| 186 |
|
\and Mick Follows \and Chris Hill \and Constantinos Evangelinos |
| 187 |
|
\and Gael Forget |
| 188 |
|
\\ |
| 189 |
|
\\ |
| 190 |
|
\\ |
| 191 |
|
MIT Department of EAPS \\ |
| 192 |
|
77 Massachusetts Ave. \\ |
| 193 |
|
Cambridge, MA \ 02139-4307 |
| 194 |
|
} |
| 195 |
|
|
| 196 |
|
\date{August 19, 2004} |
| 197 |
|
|
| 198 |
|
\maketitle |
| 199 |
|
|
| 200 |
\tableofcontents |
\tableofcontents |
| 201 |
%\pagebreak |
%\pagebreak |
| 202 |
|
|
| 207 |
%\pagebreak |
%\pagebreak |
| 208 |
|
|
| 209 |
% Section: Discretization and Algorithm |
% Section: Discretization and Algorithm |
| 210 |
\input{part2/part2} |
%% \input{part2/part2} |
| 211 |
%\pagebreak |
%\pagebreak |
| 212 |
|
|
| 213 |
% Section: Getting started |
% Section: Getting started |
| 214 |
\input{part3/part3} |
%% \input{part3/part3} |
| 215 |
%\pagebreak |
%\pagebreak |
| 216 |
|
|
| 217 |
% Section: Software Architecture |
% Section: Software Architecture |
| 218 |
\input{part4/part4} |
%% \input{part4/part4} |
| 219 |
%\pagebreak |
%\pagebreak |
| 220 |
|
|
| 221 |
|
|
| 222 |
%\part{Adjoint of the MIT GCM} |
%\part{Adjoint of the MIT GCM} |
| 223 |
|
|
| 224 |
% Section: Automatic Differentiation |
% Section: Automatic Differentiation |
| 225 |
\input{part5/part5} |
%% \input{part5/part5} |
| 226 |
%\pagebreak |
%\pagebreak |
| 227 |
|
|
| 228 |
|
|
| 229 |
%\part{Additional features} |
%\part{Additional features} |
| 230 |
|
|
| 231 |
% Section: Physical Packages |
% Section: Physical Packages |
| 232 |
\input{part6/part6} |
%% \input{part6/part6} |
| 233 |
%\pagebreak |
%\pagebreak |
| 234 |
|
|
| 235 |
% Section: Pre-processing and Post-processing Tools |
% Section: Pre-processing and Post-processing Tools |
| 236 |
\input{part7/part7} |
%% \input{part7/part7} |
| 237 |
%\pagebreak |
%\pagebreak |
| 238 |
|
|
| 239 |
% Section: ECCO |
% Section: ECCO |
| 240 |
\input{part8/part8} |
%% \input{part8/part8} |
| 241 |
%\pagebreak |
%\pagebreak |
| 242 |
|
|
| 243 |
% Section: Model Uses |
% Section: Model Uses |
| 244 |
\input{model_uses} |
%% \input{model_uses} |
| 245 |
%\pagebreak |
%\pagebreak |
| 246 |
|
|
| 247 |
% Section: References: |
% Section: References: |
| 248 |
%\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} |
%\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} |
| 249 |
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY} |
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY} |
| 250 |
%aja%\bibliography{\BIBPATH/manual_references} |
%aja%\bibliography{\BIBPATH/manual_references} |
| 251 |
\bibliography{manual_references} |
\bibliography{manual_references,baylor_biblio} |
| 252 |
|
|
| 253 |
\end{document} |
\end{document} |
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