/[MITgcm]/manual/manual.tex
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revision 1.12 by cnh, Fri Mar 1 20:03:35 2002 UTC revision 1.32 by jmc, Mon Aug 1 22:14:19 2005 UTC
# Line 1  Line 1 
1  % $Header$  % $Header$
2  % $Name$  % $Name$
3    
4  \documentclass[12pt]{book}  \documentclass[10pt]{book}
5    
6  %To help cross-reference  %To help cross-reference
7  %\usepackage{showlabels}  %\usepackage{showlabels}
# Line 9  Line 9 
9  %aja%\usepackage{amsfonts}  %aja%\usepackage{amsfonts}
10  \usepackage{amsmath}  \usepackage{amsmath}
11  \usepackage{html}  \usepackage{html}
12    \usepackage{hthtml}
13  \usepackage{graphicx}  \usepackage{graphicx}
14    
15  %cnh%\usepackage{array}  %cnh%\usepackage{array}
16  %cnh%\usepackage{multirow}  %cnh%\usepackage{multirow}
17    
18  % Command to reference entries in either "code" or "names"  %eh3  Commands to reference either files or symbols within the "HTML-ized"
19  % directories of browseable code tree.  %eh3  ("vdb") code.
20  \newcommand{\proclink}[2]{  %eh3  
21  \htmladdnormallink{\em #1()}{../../code_reference/vdb/names/#2_docref.html}  %afe seems like these need to be long, sorry
22  }  \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}
23  \newcommand{\varlink}[2]{  \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}
24  \htmladdnormallink{\bf \tt #1}{../../code_reference/vdb/names/#2_docref.html}  
25  }  % afe  Commands to standardize typesetting
26    \newcommand{\file}[1]{\texttt{#1}}
27    \newcommand{\sectiontitle}[1]{\textsl{#1}}
28    \newcommand{\code}[1]{\texttt{#1}}
29    
30    %%  EH3 : try out the epsfig package
31    \usepackage[dvips]{epsfig}
32    \def\scalefig#1{\epsfxsize #1\textwidth}
33    
34    %EH3% ==========================================================
35    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
36    %EH3%
37    %EH3%  Directions: To build the ``private'' or ``local-only''
38    %EH3%    version of this manual, then edit the following so
39    %EH3%    they appear as:
40    %EH3%
41    %EH3%    % \includecomment{versionprivate}
42    %EH3%    \excludecoment{versionprivate}
43    %EH3%
44    %EH3%    The default is to include everything which is:
45    %EH3%
46    %EH3%    \includecomment{versionprivate}
47    %EH3%    % \excludecoment{versionprivate}
48    
49    %\includecomment{versionprivate}
50    \excludecomment{versionprivate}
51    
52    %EH3%
53    %EH3%    To use this comment, simply bracket any part of the
54    %EH3%    manual with two lines that contain ONLY the following
55    %EH3%    pair:
56    %EH3%
57    %EH3%      \begin{versionprivate}
58    %EH3%      \end{versionprivate}
59    %EH3%
60    %EH3%    with NO additional comments or other commands on the
61    %EH3%    lines containing the \begin{...}\end{...} statements.
62    %EH3%
63    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
64    %EH3% ==========================================================
65    
66    
67  %ph%\usepackage{epsfig}  %ph%\usepackage{epsfig}
# Line 51  Line 90 
90  %aja%\gdef\harvardleft{[}  %aja%\gdef\harvardleft{[}
91  %aja%\gdef\harvardright{]}  %aja%\gdef\harvardright{]}
92  %aja%\bibpunct{[}{]}{,}{a}{}{,}  %aja%\bibpunct{[}{]}{,}{a}{}{,}
93  \bibliographystyle{plain}  %\bibliographystyle{plain}
94    %-jmc: try agu bib-style (give author names & year instead of just a number)
95    \usepackage[square]{natbib}
96    \bibliographystyle{agu}
97    
98  % referencing  % referencing
99  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
# Line 74  Line 116 
116  % This allows hyperlinks in PDF  % This allows hyperlinks in PDF
117  % hyperref package and colors for hyperref package  % hyperref package and colors for hyperref package
118  \usepackage{color}  \usepackage{color}
119  \usepackage[dvips]{hyperref}  \usepackage{hyperref}
120    %\usepackage[dvips]
121  \definecolor{darkgreen}{rgb}{0,0.4,0}  \definecolor{darkgreen}{rgb}{0,0.4,0}
122  \definecolor{darkblue}{rgb}{0,0,0.4}  \definecolor{darkblue}{rgb}{0,0,0.4}
123  \definecolor{darkred}{rgb}{0.5,0,0}  \definecolor{darkred}{rgb}{0.5,0,0}
# Line 84  Line 127 
127    citecolor=darkblue,    citecolor=darkblue,
128    pagecolor=darkred,    pagecolor=darkred,
129    pdftitle={MITgcm Release 1 Documentation},    pdftitle={MITgcm Release 1 Documentation},
130    pdfauthor={support@mitgcm.org},    pdfauthor={MITgcm-support@mitgcm.org},
131    pdfkeywords={oceanography, ocean model, general circulation model,    pdfkeywords={oceanography, ocean model, general circulation model,
132      non-hydrostatic, finite volume, inverse methods, adjoint method}      non-hydrostatic, finite volume, inverse methods, adjoint method}
133    }    }
134    
135    % Some definitions (AMM)
136    \def\p#1{{\partial \over {\partial #1}}}
137    \def\pp#1#2{{\partial #1 \over {\partial #2}}}
138    \def\dd#1#2{{d #1 \over {d #2}}}
139    \def\bq{\begin{equation}}
140    \def\bqa{\begin{eqnarray}}
141    \def\eq{\end{equation}}
142    \def\eqa{\end{eqnarray}}
143    
144    \def\h{ {1\over2} }
145    \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
146    \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
147    
148    \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
149    
150    
151  \begin{document}  \begin{document}
152    
153  \bodytext{bgcolor="#FFFFFFFF"}  \bodytext{bgcolor="#FFFFFFFF"}
# Line 128  Line 187 
187  \input{part6/part6}  \input{part6/part6}
188  %\pagebreak  %\pagebreak
189    
190  % Section: Diagnostics  % Section: Pre-processing and Post-processing Tools
191  \input{part7/part7}  \input{part7/part7}
192  %\pagebreak  %\pagebreak
193    
194  % Section: ECCO Interface  % Section: ECCO
195  \input{part8/part8}  \input{part8/part8}
196  %\pagebreak  %\pagebreak
197    
198    % Section: Model Uses
199    \input{model_uses}
200    %\pagebreak
201    
202  % Section: References:  % Section: References:
203  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
204  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
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