--- manual/manual.tex	2002/04/24 20:12:36	1.14
+++ manual/manual.tex	2004/03/22 02:08:30	1.24
@@ -1,4 +1,4 @@
-% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.14 2002/04/24 20:12:36 adcroft Exp $
+% $Header: /home/ubuntu/mnt/e9_copy/manual/manual.tex,v 1.24 2004/03/22 02:08:30 edhill Exp $
 % $Name:  $
 
 \documentclass[12pt]{book}
@@ -9,20 +9,31 @@
 %aja%\usepackage{amsfonts}
 \usepackage{amsmath}
 \usepackage{html}
+\usepackage{hthtml}
 \usepackage{graphicx}
 
 %cnh%\usepackage{array}
 %cnh%\usepackage{multirow}
 
-% Command to reference entries in either "code" or "names"
-% directories of browseable code tree.
-\newcommand{\proclink}[2]{
-\htmladdnormallink{\em #1()}{../../code_reference/vdb/names/#2_docref.html}
-}
-\newcommand{\varlink}[2]{
-\htmladdnormallink{\bf \tt #1}{../../code_reference/vdb/names/#2_docref.html}
-}
+%eh3  Commands to reference either files or symbols within the "HTML-ized"
+%eh3  ("vdb") code.
+%eh3  
+%afe seems like these need to be long, sorry
+\newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}
+\newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}
 
+% afe  Commands to standardize typesetting 
+\newcommand{\file}[1]{\texttt{#1}}
+
+\newcommand{\sectiontitle}[1]{\textsl{#1}}
+
+\newcommand{\code}[1]{\texttt{#1}}
+
+
+
+%eh3 try out the epsfig package
+\usepackage[dvips]{epsfig}
+\def\scalefig#1{\epsfxsize #1\textwidth}
 
 
 %ph%\usepackage{epsfig}
@@ -84,11 +95,27 @@
   citecolor=darkblue,
   pagecolor=darkred,
   pdftitle={MITgcm Release 1 Documentation}, 
-  pdfauthor={support@mitgcm.org}, 
+  pdfauthor={MITgcm-support@mitgcm.org}, 
   pdfkeywords={oceanography, ocean model, general circulation model,
     non-hydrostatic, finite volume, inverse methods, adjoint method} 
   } 
 
+% Some definitions (AMM)
+\def\p#1{{\partial \over {\partial #1}}}
+\def\pp#1#2{{\partial #1 \over {\partial #2}}}
+\def\dd#1#2{{d #1 \over {d #2}}}
+\def\bq{\begin{equation}}
+\def\bqa{\begin{eqnarray}}
+\def\eq{\end{equation}}
+\def\eqa{\end{eqnarray}}
+
+\def\h{ {1\over2} }
+\def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
+\def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
+
+\def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
+
+
 \begin{document}
 
 \bodytext{bgcolor="#FFFFFFFF"} 
@@ -136,6 +163,10 @@
 \input{part8/part8}
 %\pagebreak
 
+% Section: Model Uses
+\input{model_uses}
+%\pagebreak
+
 % Section: References:
 %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
 \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
