/[MITgcm]/manual/manual.tex
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revision 1.20 by edhill, Thu Feb 12 03:35:05 2004 UTC revision 1.42 by jmc, Fri Mar 7 18:02:53 2008 UTC
# Line 1  Line 1 
1  % $Header$  % $Header$
2  % $Name$  % $Name$
3    
4  \documentclass[12pt]{book}  \documentclass[10pt]{book}
5    
6  %To help cross-reference  %To help cross-reference
7  %\usepackage{showlabels}  %\usepackage{showlabels}
# Line 11  Line 11 
11  \usepackage{html}  \usepackage{html}
12  \usepackage{hthtml}  \usepackage{hthtml}
13  \usepackage{graphicx}  \usepackage{graphicx}
14    \usepackage{rotating}
15    
16    % CNH playing around with page widths
17    \usepackage{anysize}
18    
19  %cnh%\usepackage{array}  %cnh%\usepackage{array}
20  %cnh%\usepackage{multirow}  %cnh%\usepackage{multirow}
# Line 18  Line 22 
22  %eh3  Commands to reference either files or symbols within the "HTML-ized"  %eh3  Commands to reference either files or symbols within the "HTML-ized"
23  %eh3  ("vdb") code.  %eh3  ("vdb") code.
24  %eh3    %eh3  
25  \newcommand{\varlink}[2]{  %afe seems like these need to be long, sorry
26  \htmladdnormallink{\em #1()}{../code_reference/vdb/byname/#2.html}  \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}
27  }  \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}
28  \newcommand{\filelink}[2]{  \newcommand{\myhref}[2]{\htmladdnormallink{#2}{#1}}
29  \htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}  
30  }  % afe  Commands to standardize typesetting
31    \newcommand{\file}[1]{\texttt{#1}}
32    \newcommand{\sectiontitle}[1]{\textsl{#1}}
33    \newcommand{\code}[1]{\texttt{#1}}
34    
35  %eh3 try out the epsfig package  %%  EH3 : try out the epsfig package
36  \usepackage[dvips]{epsfig}  \usepackage[dvips]{epsfig}
37  \def\scalefig#1{\epsfxsize #1\textwidth}  \def\scalefig#1{\epsfxsize #1\textwidth}
38    
39    %EH3% ==========================================================
40    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
41    %EH3%
42    %EH3%  Directions: To build the ``private'' or ``local-only''
43    %EH3%    version of this manual, then edit the following so
44    %EH3%    they appear as:
45    %EH3%
46    %EH3%    % \includecomment{versionprivate}
47    %EH3%    \excludecoment{versionprivate}
48    %EH3%
49    %EH3%    The default is to include everything which is:
50    %EH3%
51    %EH3%    \includecomment{versionprivate}
52    %EH3%    % \excludecoment{versionprivate}
53    
54    %\includecomment{versionprivate}
55    \excludecomment{versionprivate}
56    
57    %EH3%
58    %EH3%    To use this comment, simply bracket any part of the
59    %EH3%    manual with two lines that contain ONLY the following
60    %EH3%    pair:
61    %EH3%
62    %EH3%      \begin{versionprivate}
63    %EH3%      \end{versionprivate}
64    %EH3%
65    %EH3%    with NO additional comments or other commands on the
66    %EH3%    lines containing the \begin{...}\end{...} statements.
67    %EH3%
68    %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   ***
69    %EH3% ==========================================================
70    
71    
72  %ph%\usepackage{epsfig}  %ph%\usepackage{epsfig}
73  %ph%\usepackage{psfrag}  %ph%\usepackage{psfrag}
# Line 56  Line 95 
95  %aja%\gdef\harvardleft{[}  %aja%\gdef\harvardleft{[}
96  %aja%\gdef\harvardright{]}  %aja%\gdef\harvardright{]}
97  %aja%\bibpunct{[}{]}{,}{a}{}{,}  %aja%\bibpunct{[}{]}{,}{a}{}{,}
98  \bibliographystyle{plain}  %\bibliographystyle{plain}
99    %-jmc: try agu bib-style (give author names & year instead of just a number)
100    %% \usepackage[square]
101    \usepackage[square]{natbib}
102    \bibliographystyle{agu}
103    %% \bibliographystyle{aguurl}
104    
105  % referencing  % referencing
106  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
# Line 79  Line 123 
123  % This allows hyperlinks in PDF  % This allows hyperlinks in PDF
124  % hyperref package and colors for hyperref package  % hyperref package and colors for hyperref package
125  \usepackage{color}  \usepackage{color}
126  \usepackage[dvips]{hyperref}  \usepackage{hyperref}
127    %\usepackage[dvips]
128  \definecolor{darkgreen}{rgb}{0,0.4,0}  \definecolor{darkgreen}{rgb}{0,0.4,0}
129  \definecolor{darkblue}{rgb}{0,0,0.4}  \definecolor{darkblue}{rgb}{0,0,0.4}
130  \definecolor{darkred}{rgb}{0.5,0,0}  \definecolor{darkred}{rgb}{0.5,0,0}
# Line 109  Line 154 
154    
155  \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}  \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
156    
157    % Some definitions modified from the ones provided by Baylor
158    \def\BFKav#1{\overline{#1}}
159    \def\BFKpd#1#2{{\frac{\partial{#2}}{\partial{#1}}}}
160    \def\BFKpds#1#2{{\frac{\partial^2{#2}}{{\partial{#1}}^2}}}
161    \def\BFKDt#1{\frac{D{#1}}{Dt}}
162    \def\BFKaDt#1{\frac{\BFKav D{#1}}{\BFKav{Dt}}}
163    \def\BFKd#1{{\,\rm d#1}}
164    \def\BFKRo{{\rm Ro}}
165    \def\BFKRe{{\rm Re}}
166    \def\BFKFr{{\rm Fr}}
167    \def\BFKPr{{\rm Pr}}
168    \def\BFKMr{{M_{Ro}}}
169    \def\BFKtu{{\tilde u}}
170    \def\BFKtv{{\tilde v}}
171    \def\BFKatu{{\tilde {\BFKav u}}}
172    \def\BFKatv{{\tilde {\BFKav v}}}
173    \def\BFKlesssim{{<\atop\sim}}
174    
175    %  Definitions from EH3:
176    \def\CC{C\raise.3ex\hbox{{\footnotesize
177          +}}\raise.3ex\hbox{\footnotesize +}\ }
178    
179  \begin{document}  \begin{document}
180    
181  \bodytext{bgcolor="#FFFFFFFF"}  \bodytext{bgcolor="#FFFFFFFF"}
182    
183    \title{ \textsc{MITgcm User Manual} }
184    
185    \author{
186      Alistair Adcroft \and Jean-Michel Campin \and Stephanie Dutkiewicz
187      \and Constantinos Evangelinos \and David Ferreira %\and Mick Follows
188      \and Gael Forget \and Baylor Fox-Kemper \and Patrick Heimbach
189      \and Chris Hill \and Ed Hill \and Helen Hill
190      \and Oliver Jahn \and Martin Losch \and John Marshall
191      \and Guillaume Maze \and Dimitris Menemenlis \and Andrea Molod
192      \\
193      \\
194      \\
195      MIT Department of EAPS  \\
196      77 Massachusetts Ave. \\
197      Cambridge, MA \ 02139-4307
198    }
199    
200    %\date{August 19, 2004}
201    \date{\today}
202    
203    \maketitle
204    
205  \tableofcontents  \tableofcontents
206  %\pagebreak  %\pagebreak
207    
# Line 149  Line 237 
237  \input{part6/part6}  \input{part6/part6}
238  %\pagebreak  %\pagebreak
239    
240  % Section: Diagnostics  % Section: Pre-processing and Post-processing Tools
241  \input{part7/part7}  \input{part7/part7}
242  %\pagebreak  %\pagebreak
243    
# Line 157  Line 245 
245  \input{part8/part8}  \input{part8/part8}
246  %\pagebreak  %\pagebreak
247    
248    % Section: Model Uses
249    \input{model_uses}
250    %\pagebreak
251    
252  % Section: References:  % Section: References:
253  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
254  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
255  %aja%\bibliography{\BIBPATH/manual_references}  %aja%\bibliography{\BIBPATH/manual_references}
256  \bibliography{manual_references}  \bibliography{manual_references,baylor_biblio}
257    
258  \end{document}  \end{document}
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