/[MITgcm]/manual/manual.tex
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revision 1.8 by adcroft, Thu Oct 11 19:42:25 2001 UTC revision 1.12 by cnh, Fri Mar 1 20:03:35 2002 UTC
# Line 9  Line 9 
9  %aja%\usepackage{amsfonts}  %aja%\usepackage{amsfonts}
10  \usepackage{amsmath}  \usepackage{amsmath}
11  \usepackage{html}  \usepackage{html}
12  \usepackage{graphics}  \usepackage{graphicx}
13    
14  %cnh%\usepackage{array}  %cnh%\usepackage{array}
15  %cnh%\usepackage{multirow}  %cnh%\usepackage{multirow}
16    
17    % Command to reference entries in either "code" or "names"
18    % directories of browseable code tree.
19    \newcommand{\proclink}[2]{
20    \htmladdnormallink{\em #1()}{../../code_reference/vdb/names/#2_docref.html}
21    }
22    \newcommand{\varlink}[2]{
23    \htmladdnormallink{\bf \tt #1}{../../code_reference/vdb/names/#2_docref.html}
24    }
25    
26    
27    
28  %ph%\usepackage{epsfig}  %ph%\usepackage{epsfig}
29  %ph%\usepackage{psfrag}  %ph%\usepackage{psfrag}
30  %ph%\usepackage{oldgerm}  %ph%\usepackage{oldgerm}
# Line 34  Line 45 
45  %cnh%\renewcommand{\footrulewidth}{0.4pt}  %cnh%\renewcommand{\footrulewidth}{0.4pt}
46    
47  % bibtex stuff  % bibtex stuff
48  \newcommand{\BIBPATH}{.}  %aja%\newcommand{\BIBPATH}{.}
49  \usepackage{natbib}  %aja%\usepackage{natbib}
50  \bibliographystyle{\BIBPATH/jmr_my}  %aja%\bibliographystyle{\BIBPATH/jmr_my}
51  \gdef\harvardleft{[}  %aja%\gdef\harvardleft{[}
52  \gdef\harvardright{]}  %aja%\gdef\harvardright{]}
53  \bibpunct{[}{]}{,}{a}{}{,}  %aja%\bibpunct{[}{]}{,}{a}{}{,}
54    \bibliographystyle{plain}
55    
56  % referencing  % referencing
57  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
# Line 59  Line 71 
71  %\renewcommand{\chaptername}{Section}  %\renewcommand{\chaptername}{Section}
72    
73    
74    % This allows hyperlinks in PDF
75    % hyperref package and colors for hyperref package
76    \usepackage{color}
77    \usepackage[dvips]{hyperref}
78    \definecolor{darkgreen}{rgb}{0,0.4,0}
79    \definecolor{darkblue}{rgb}{0,0,0.4}
80    \definecolor{darkred}{rgb}{0.5,0,0}
81    \hypersetup{breaklinks=true,
82      colorlinks=true,
83      linkcolor=darkgreen,
84      citecolor=darkblue,
85      pagecolor=darkred,
86      pdftitle={MITgcm Release 1 Documentation},
87      pdfauthor={support@mitgcm.org},
88      pdfkeywords={oceanography, ocean model, general circulation model,
89        non-hydrostatic, finite volume, inverse methods, adjoint method}
90      }
91    
92  \begin{document}  \begin{document}
93    
94    \bodytext{bgcolor="#FFFFFFFF"}
95    
96  \tableofcontents  \tableofcontents
97  \pagebreak  %\pagebreak
98    
99  \part{MIT GCM basics}  %\part{MIT GCM basics}
100    
101  % Section: Overview  % Section: Overview
102  \input{part1/part1}  \input{part1/part1}
# Line 83  Line 115 
115  %\pagebreak  %\pagebreak
116    
117    
118  \part{Adjoint of the MIT GCM}  %\part{Adjoint of the MIT GCM}
119    
120  % Section: Automatic Differentiation  % Section: Automatic Differentiation
121  \input{part5/part5}  \input{part5/part5}
122  %\pagebreak  %\pagebreak
123    
124    
125  \part{Additional features}  %\part{Additional features}
126    
127  % Section: Physical Packages  % Section: Physical Packages
128  \input{part6/part6}  \input{part6/part6}
# Line 105  Line 137 
137  %\pagebreak  %\pagebreak
138    
139  % Section: References:  % Section: References:
140  \markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}  %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
141  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}  \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
142  \bibliography{\BIBPATH/manual_references}  %aja%\bibliography{\BIBPATH/manual_references}
143    \bibliography{manual_references}
144    
145  \end{document}  \end{document}
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