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\documentclass[12pt]{book} |
\documentclass[12pt]{book} |
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\usepackage{amsfonts} |
%To help cross-reference |
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%\usepackage{showlabels} |
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%aja%\usepackage{amsfonts} |
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\usepackage{amsmath} |
\usepackage{amsmath} |
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\usepackage{/usr/local/pkg/latex2html/current/texinputs/html} |
\usepackage{html} |
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\usepackage{epsfig} |
\usepackage{graphicx} |
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\usepackage{graphics,subfigure} |
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\usepackage{array} |
%cnh%\usepackage{array} |
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\usepackage{multirow} |
%cnh%\usepackage{multirow} |
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\usepackage{fancyhdr} |
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\usepackage{psfrag} |
%ph%\usepackage{epsfig} |
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%\usepackage{oldgerm} |
%ph%\usepackage{psfrag} |
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%ph%\usepackage{oldgerm} |
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% I commented the following because it introduced excessive white space |
% I commented the following because it introduced excessive white space |
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%\usepackage{palatcm} % better PDF |
%aja%\usepackage{palatcm} % better PDF |
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% page headers and footers |
% page headers and footers |
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%cnh%\usepackage{fancyhdr} |
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%\pagestyle{fancy} |
%\pagestyle{fancy} |
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\fancyhead{} |
%cnh%\fancyhead{} |
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\fancyhead[LO]{\slshape \rightmark} |
%cnh%\fancyhead[LO]{\slshape \rightmark} |
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\fancyhead[RE]{\slshape \leftmark} |
%cnh%\fancyhead[RE]{\slshape \leftmark} |
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\fancyhead[RO,LE]{\thepage} |
%cnh%\fancyhead[RO,LE]{\thepage} |
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\fancyfoot[CO,CE]{\today} |
%cnh%\fancyfoot[CO,CE]{\today} |
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\fancyfoot[RO,LE]{ } |
%cnh%\fancyfoot[RO,LE]{ } |
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\renewcommand{\headrulewidth}{0.4pt} |
%cnh%\renewcommand{\headrulewidth}{0.4pt} |
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\renewcommand{\footrulewidth}{0.4pt} |
%cnh%\renewcommand{\footrulewidth}{0.4pt} |
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% bibtex stuff |
% bibtex stuff |
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\newcommand{\BIBPATH}{.} |
%aja%\newcommand{\BIBPATH}{.} |
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\usepackage{natbib} |
%aja%\usepackage{natbib} |
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\bibliographystyle{\BIBPATH/jmr_my} |
%aja%\bibliographystyle{\BIBPATH/jmr_my} |
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\gdef\harvardleft{[} |
%aja%\gdef\harvardleft{[} |
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\gdef\harvardright{]} |
%aja%\gdef\harvardright{]} |
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\bibpunct{[}{]}{,}{a}{}{,} |
%aja%\bibpunct{[}{]}{,}{a}{}{,} |
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\bibliographystyle{plain} |
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% referencing |
% referencing |
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\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
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\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})} |
%ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})} |
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\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}} |
%ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}} |
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\newcommand{\reftabno}[1]{\ref{tab:#1}} |
%ph%\newcommand{\reftabno}[1]{\ref{tab:#1}} |
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\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}} |
%ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}} |
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\newcommand{\reffigno}[1]{\ref{fig:#1}} |
%ph%\newcommand{\reffigno}[1]{\ref{fig:#1}} |
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% stuff for psfrag |
% stuff for psfrag |
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\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}} |
%ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}} |
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\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}} |
%ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}} |
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% This allows numbering of subsubsections |
% This allows numbering of subsubsections |
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\setcounter{secnumdepth}{3} |
\setcounter{secnumdepth}{3} |
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% This changes the the chapter title |
% This changes the the chapter title |
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%\renewcommand{\chaptername}{Section} |
%\renewcommand{\chaptername}{Section} |
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\usepackage{showlabels} |
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\begin{document} |
\begin{document} |
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\bodytext{bgcolor="#FFFFFFFF"} |
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\tableofcontents |
\tableofcontents |
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\pagebreak |
%\pagebreak |
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\part{The MIT GCM basics} |
%\part{MIT GCM basics} |
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% Section: Overview |
% Section: Overview |
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\input{part1/part1} |
\input{part1/part1} |
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\pagebreak |
%\pagebreak |
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% Section: Discretization and Algorithm |
% Section: Discretization and Algorithm |
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\input{part2/part2} |
\input{part2/part2} |
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\pagebreak |
%\pagebreak |
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% Section: Getting started |
% Section: Getting started |
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\input{part3/part3} |
\input{part3/part3} |
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\pagebreak |
%\pagebreak |
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% Section: Software Architecture |
% Section: Software Architecture |
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\input{part4/part4} |
\input{part4/part4} |
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\pagebreak |
%\pagebreak |
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\part{Adjoint of the MIT GCM} |
%\part{Adjoint of the MIT GCM} |
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% Section: Automatic Differentiation |
% Section: Automatic Differentiation |
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\input{part5/part5} |
\input{part5/part5} |
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\pagebreak |
%\pagebreak |
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\part{Additional features} |
%\part{Additional features} |
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% Section: Physical Packages |
% Section: Physical Packages |
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\input{part6/part6} |
\input{part6/part6} |
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\pagebreak |
%\pagebreak |
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% Section: Diagnostics |
% Section: Diagnostics |
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\input{part7/part7} |
\input{part7/part7} |
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\pagebreak |
%\pagebreak |
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% Section: ECCO Interface |
% Section: ECCO Interface |
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\input{part8/part8} |
\input{part8/part8} |
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\pagebreak |
%\pagebreak |
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% Section: References: |
% Section: References: |
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\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} |
%\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} |
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\addcontentsline{toc}{chapter}{BIBLIOGRAPHY} |
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY} |
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\bibliography{\BIBPATH/manual_references} |
%aja%\bibliography{\BIBPATH/manual_references} |
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\bibliography{manual_references} |
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\end{document} |
\end{document} |
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