| 9 | %aja%\usepackage{amsfonts} | %aja%\usepackage{amsfonts} | 
| 10 | \usepackage{amsmath} | \usepackage{amsmath} | 
| 11 | \usepackage{html} | \usepackage{html} | 
| 12 | \usepackage{graphics} | \usepackage{graphicx} | 
| 13 |  |  | 
| 14 | %cnh%\usepackage{array} | %cnh%\usepackage{array} | 
| 15 | %cnh%\usepackage{multirow} | %cnh%\usepackage{multirow} | 
| 34 | %cnh%\renewcommand{\footrulewidth}{0.4pt} | %cnh%\renewcommand{\footrulewidth}{0.4pt} | 
| 35 |  |  | 
| 36 | % bibtex stuff | % bibtex stuff | 
| 37 | \newcommand{\BIBPATH}{.} | %aja%\newcommand{\BIBPATH}{.} | 
| 38 | \usepackage{natbib} | %aja%\usepackage{natbib} | 
| 39 | \bibliographystyle{\BIBPATH/jmr_my} | %aja%\bibliographystyle{\BIBPATH/jmr_my} | 
| 40 | \gdef\harvardleft{[} | %aja%\gdef\harvardleft{[} | 
| 41 | \gdef\harvardright{]} | %aja%\gdef\harvardright{]} | 
| 42 | \bibpunct{[}{]}{,}{a}{}{,} | %aja%\bibpunct{[}{]}{,}{a}{}{,} | 
| 43 |  | \bibliographystyle{plain} | 
| 44 |  |  | 
| 45 | % referencing | % referencing | 
| 46 | %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} | %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} | 
| 65 | \bodytext{bgcolor="#FFFFFFFF"} | \bodytext{bgcolor="#FFFFFFFF"} | 
| 66 |  |  | 
| 67 | \tableofcontents | \tableofcontents | 
| 68 | \pagebreak | %\pagebreak | 
| 69 |  |  | 
| 70 | \part{MIT GCM basics} | %\part{MIT GCM basics} | 
| 71 |  |  | 
| 72 | % Section: Overview | % Section: Overview | 
| 73 | \input{part1/part1} | \input{part1/part1} | 
| 86 | %\pagebreak | %\pagebreak | 
| 87 |  |  | 
| 88 |  |  | 
| 89 | \part{Adjoint of the MIT GCM} | %\part{Adjoint of the MIT GCM} | 
| 90 |  |  | 
| 91 | % Section: Automatic Differentiation | % Section: Automatic Differentiation | 
| 92 | \input{part5/part5} | \input{part5/part5} | 
| 93 | %\pagebreak | %\pagebreak | 
| 94 |  |  | 
| 95 |  |  | 
| 96 | \part{Additional features} | %\part{Additional features} | 
| 97 |  |  | 
| 98 | % Section: Physical Packages | % Section: Physical Packages | 
| 99 | \input{part6/part6} | \input{part6/part6} | 
| 108 | %\pagebreak | %\pagebreak | 
| 109 |  |  | 
| 110 | % Section: References: | % Section: References: | 
| 111 | \markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} | %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} | 
| 112 | \addcontentsline{toc}{chapter}{BIBLIOGRAPHY} | \addcontentsline{toc}{chapter}{BIBLIOGRAPHY} | 
| 113 | \bibliography{\BIBPATH/manual_references} | %aja%\bibliography{\BIBPATH/manual_references} | 
| 114 |  | \bibliography{manual_references} | 
| 115 |  |  | 
| 116 | \end{document} | \end{document} |