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% $Header: /u/gcmpack/mitgcmdoc/manual.tex,v 1.12 2002/03/01 20:03:35 cnh Exp $ |
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% $Name: $ |
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\documentclass[12pt]{book} |
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%To help cross-reference |
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%\usepackage{showlabels} |
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%aja%\usepackage{amsfonts} |
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\usepackage{amsmath} |
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\usepackage{html} |
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\usepackage{graphicx} |
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%cnh%\usepackage{array} |
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%cnh%\usepackage{multirow} |
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% Command to reference entries in either "code" or "names" |
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% directories of browseable code tree. |
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\newcommand{\proclink}[2]{ |
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\htmladdnormallink{\em #1()}{../../code_reference/vdb/names/#2_docref.html} |
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} |
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\newcommand{\varlink}[2]{ |
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\htmladdnormallink{\bf \tt #1}{../../code_reference/vdb/names/#2_docref.html} |
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} |
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%ph%\usepackage{epsfig} |
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%ph%\usepackage{psfrag} |
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%ph%\usepackage{oldgerm} |
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% I commented the following because it introduced excessive white space |
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%aja%\usepackage{palatcm} % better PDF |
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% page headers and footers |
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%cnh%\usepackage{fancyhdr} |
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%\pagestyle{fancy} |
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%cnh%\fancyhead{} |
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%cnh%\fancyhead[LO]{\slshape \rightmark} |
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%cnh%\fancyhead[RE]{\slshape \leftmark} |
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%cnh%\fancyhead[RO,LE]{\thepage} |
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%cnh%\fancyfoot[CO,CE]{\today} |
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%cnh%\fancyfoot[RO,LE]{ } |
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%cnh%\renewcommand{\headrulewidth}{0.4pt} |
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%cnh%\renewcommand{\footrulewidth}{0.4pt} |
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% bibtex stuff |
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%aja%\newcommand{\BIBPATH}{.} |
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%aja%\usepackage{natbib} |
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%aja%\bibliographystyle{\BIBPATH/jmr_my} |
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%aja%\gdef\harvardleft{[} |
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%aja%\gdef\harvardright{]} |
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%aja%\bibpunct{[}{]}{,}{a}{}{,} |
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\bibliographystyle{plain} |
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% referencing |
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%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
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%ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})} |
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%ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}} |
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%ph%\newcommand{\reftabno}[1]{\ref{tab:#1}} |
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%ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}} |
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%ph%\newcommand{\reffigno}[1]{\ref{fig:#1}} |
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% stuff for psfrag |
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%ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}} |
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%ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}} |
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% This allows numbering of subsubsections |
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\setcounter{secnumdepth}{3} |
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% This changes the the chapter title |
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%\renewcommand{\chaptername}{Section} |
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% This allows hyperlinks in PDF |
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% hyperref package and colors for hyperref package |
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\usepackage{color} |
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\usepackage[dvips]{hyperref} |
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\definecolor{darkgreen}{rgb}{0,0.4,0} |
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\definecolor{darkblue}{rgb}{0,0,0.4} |
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\definecolor{darkred}{rgb}{0.5,0,0} |
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\hypersetup{breaklinks=true, |
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colorlinks=true, |
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linkcolor=darkgreen, |
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citecolor=darkblue, |
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pagecolor=darkred, |
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pdftitle={MITgcm Release 1 Documentation}, |
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pdfauthor={support@mitgcm.org}, |
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pdfkeywords={oceanography, ocean model, general circulation model, |
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non-hydrostatic, finite volume, inverse methods, adjoint method} |
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} |
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\begin{document} |
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\bodytext{bgcolor="#FFFFFFFF"} |
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\tableofcontents |
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%\pagebreak |
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%\part{MIT GCM basics} |
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% Section: Overview |
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\input{part1/part1} |
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%\pagebreak |
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% Section: Discretization and Algorithm |
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\input{part2/part2} |
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%\pagebreak |
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% Section: Getting started |
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\input{part3/part3} |
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%\pagebreak |
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% Section: Software Architecture |
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\input{part4/part4} |
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%\pagebreak |
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%\part{Adjoint of the MIT GCM} |
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% Section: Automatic Differentiation |
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\input{part5/part5} |
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%\pagebreak |
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%\part{Additional features} |
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% Section: Physical Packages |
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\input{part6/part6} |
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%\pagebreak |
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% Section: Diagnostics |
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\input{part7/part7} |
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%\pagebreak |
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% Section: References: |
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%\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} |
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\addcontentsline{toc}{chapter}{BIBLIOGRAPHY} |
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%aja%\bibliography{\BIBPATH/manual_references} |
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\bibliography{manual_references} |
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\end{document} |
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