/[MITgcm]/manual/manual.tex
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revision 1.7 by cnh, Tue Oct 9 10:48:01 2001 UTC revision 1.8 by adcroft, Thu Oct 11 19:42:25 2001 UTC
# Line 3  Line 3 
3    
4  \documentclass[12pt]{book}  \documentclass[12pt]{book}
5    
6  \usepackage{amsfonts}  %To help cross-reference
7    %\usepackage{showlabels}
8    
9    %aja%\usepackage{amsfonts}
10  \usepackage{amsmath}  \usepackage{amsmath}
11  \usepackage{html}  \usepackage{html}
12  \usepackage{epsfig}  \usepackage{graphics}
13  \usepackage{graphics,subfigure}  
14  \usepackage{array}  %cnh%\usepackage{array}
15  \usepackage{multirow}  %cnh%\usepackage{multirow}
16  \usepackage{fancyhdr}  
17  \usepackage{psfrag}  %ph%\usepackage{epsfig}
18  %\usepackage{oldgerm}  %ph%\usepackage{psfrag}
19    %ph%\usepackage{oldgerm}
20    
21  % I commented the following because it introduced excessive white space  % I commented the following because it introduced excessive white space
22  %\usepackage{palatcm}              % better PDF  %aja%\usepackage{palatcm}              % better PDF
23    
24  % page headers and footers  % page headers and footers
25    %cnh%\usepackage{fancyhdr}
26  %\pagestyle{fancy}  %\pagestyle{fancy}
27  \fancyhead{}  %cnh%\fancyhead{}
28  \fancyhead[LO]{\slshape \rightmark}  %cnh%\fancyhead[LO]{\slshape \rightmark}
29  \fancyhead[RE]{\slshape \leftmark}  %cnh%\fancyhead[RE]{\slshape \leftmark}
30  \fancyhead[RO,LE]{\thepage}  %cnh%\fancyhead[RO,LE]{\thepage}
31  \fancyfoot[CO,CE]{\today}  %cnh%\fancyfoot[CO,CE]{\today}
32  \fancyfoot[RO,LE]{ }  %cnh%\fancyfoot[RO,LE]{ }
33  \renewcommand{\headrulewidth}{0.4pt}  %cnh%\renewcommand{\headrulewidth}{0.4pt}
34  \renewcommand{\footrulewidth}{0.4pt}  %cnh%\renewcommand{\footrulewidth}{0.4pt}
35    
36  % bibtex stuff  % bibtex stuff
37  \newcommand{\BIBPATH}{.}  \newcommand{\BIBPATH}{.}
# Line 36  Line 42 
42  \bibpunct{[}{]}{,}{a}{}{,}  \bibpunct{[}{]}{,}{a}{}{,}
43    
44  % referencing  % referencing
45  \newcommand{\refequ}[1]{equation (\ref{equ:#1})}  %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
46  \newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}  %ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
47  \newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}  %ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
48  \newcommand{\reftabno}[1]{\ref{tab:#1}}  %ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
49  \newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}  %ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
50  \newcommand{\reffigno}[1]{\ref{fig:#1}}  %ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}
51    
52  % stuff for psfrag  % stuff for psfrag
53  \newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}  %ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
54  \newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}  %ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
55    
56  % This allows numbering of subsubsections  % This allows numbering of subsubsections
57  \setcounter{secnumdepth}{3}  \setcounter{secnumdepth}{3}
58  % This changes the the chapter title  % This changes the the chapter title
59  %\renewcommand{\chaptername}{Section}  %\renewcommand{\chaptername}{Section}
60    
 \usepackage{showlabels}  
   
61    
62  \begin{document}  \begin{document}
63    
# Line 64  Line 68 
68    
69  % Section: Overview  % Section: Overview
70  \input{part1/part1}  \input{part1/part1}
71  \pagebreak  %\pagebreak
72    
73  % Section: Discretization and Algorithm  % Section: Discretization and Algorithm
74  \input{part2/part2}  \input{part2/part2}
75  \pagebreak  %\pagebreak
76    
77  % Section: Getting started  % Section: Getting started
78  \input{part3/part3}  \input{part3/part3}
79  \pagebreak  %\pagebreak
80    
81  % Section: Software Architecture  % Section: Software Architecture
82  \input{part4/part4}  \input{part4/part4}
83  \pagebreak  %\pagebreak
84    
85    
86  \part{Adjoint of the MIT GCM}  \part{Adjoint of the MIT GCM}
87    
88  % Section: Automatic Differentiation  % Section: Automatic Differentiation
89  \input{part5/part5}  \input{part5/part5}
90  \pagebreak  %\pagebreak
91    
92    
93  \part{Additional features}  \part{Additional features}
94    
95  % Section: Physical Packages  % Section: Physical Packages
96  \input{part6/part6}  \input{part6/part6}
97  \pagebreak  %\pagebreak
98    
99  % Section: Diagnostics  % Section: Diagnostics
100  \input{part7/part7}  \input{part7/part7}
101  \pagebreak  %\pagebreak
102    
103  % Section: ECCO Interface  % Section: ECCO Interface
104  \input{part8/part8}  \input{part8/part8}
105  \pagebreak  %\pagebreak
106    
107  % Section: References:  % Section: References:
108  \markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}  \markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
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