| 140 | } | } | 
| 141 |  |  | 
| 142 | % Some definitions (AMM) | % Some definitions (AMM) | 
| 143 | \def\p#1{{\partial \over {\partial #1}}} | \def\p#1{\frac{\partial }{\partial #1}} | 
| 144 | \def\pp#1#2{{\partial #1 \over {\partial #2}}} | \def\pp#1#2{\frac{\partial #1}{\partial #2}} | 
| 145 | \def\dd#1#2{{d #1 \over {d #2}}} | \def\dd#1#2{\frac{d #1}{d #2}} | 
| 146 | \def\bq{\begin{equation}} | \def\bq{\begin{equation}} | 
| 147 | \def\bqa{\begin{eqnarray}} | \def\bqa{\begin{eqnarray}} | 
| 148 | \def\eq{\end{equation}} | \def\eq{\end{equation}} | 
| 149 | \def\eqa{\end{eqnarray}} | \def\eqa{\end{eqnarray}} | 
| 150 |  |  | 
| 151 | \def\h{ {1\over2} } | \def\h{ \frac{1}{2} } | 
| 152 | \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}} | \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}} | 
| 153 | \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}} | \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}} | 
| 154 |  |  | 
| 183 | \title{ \textsc{MITgcm User Manual} } | \title{ \textsc{MITgcm User Manual} } | 
| 184 |  |  | 
| 185 | \author{ | \author{ | 
| 186 | John Marshall \and Alistair Adcroft \and Jean-Michel Campin | Alistair Adcroft \and Jean-Michel Campin \and Stephanie Dutkiewicz | 
| 187 | \and Patrick Heimbach \and Andrea Molod \and Stephanie Dutkiewicz | \and Constantinos Evangelinos \and David Ferreira %\and Mick Follows | 
| 188 | \and Helen Hill \and Martin Losch \and Baylor Fox-Kemper | \and Gael Forget \and Baylor Fox-Kemper \and Patrick Heimbach | 
| 189 | \and Dimitris Menemenlis \and David Ferreira \and Ed Hill | \and Chris Hill \and Ed Hill \and Helen Hill | 
| 190 | \and Mick Follows \and Chris Hill \and Constantinos Evangelinos | \and Oliver Jahn \and Martin Losch \and John Marshall | 
| 191 | \and Gael Forget | \and Guillaume Maze \and Dimitris Menemenlis \and Andrea Molod | 
| 192 | \\ | \\ | 
| 193 | \\ | \\ | 
| 194 | \\ | \\ | 
| 197 | Cambridge, MA \ 02139-4307 | Cambridge, MA \ 02139-4307 | 
| 198 | } | } | 
| 199 |  |  | 
| 200 | \date{August 19, 2004} | %\date{August 19, 2004} | 
| 201 |  | \date{\today} | 
| 202 |  |  | 
| 203 | \maketitle | \maketitle | 
| 204 |  |  | 
| 207 |  |  | 
| 208 | %\part{MIT GCM basics} | %\part{MIT GCM basics} | 
| 209 |  |  | 
| 210 | % Section: Overview | % Section: Overview of MITgcm | 
| 211 | \input{part1/part1} | \input{s_overview/text/top_section} | 
| 212 | %\pagebreak | %\pagebreak | 
| 213 |  |  | 
| 214 | % Section: Discretization and Algorithm | % Section: Discretization and Algorithm | 
| 215 | \input{part2/part2} | \input{s_algorithm/text/top_section} | 
| 216 | %\pagebreak | %\pagebreak | 
| 217 |  |  | 
| 218 | % Section: Getting started | % Section: Getting started with MITgcm | 
| 219 | \input{part3/part3} | \input{s_getstarted/text/top_section} | 
| 220 |  | %\pagebreak | 
| 221 |  |  | 
| 222 |  | % Section: Model Example <- not yet a section | 
| 223 |  | \input{s_examples/text/top_section} | 
| 224 | %\pagebreak | %\pagebreak | 
| 225 |  |  | 
| 226 | % Section: Software Architecture | % Section: Software Architecture | 
| 227 | \input{part4/part4} | \input{s_software/text/top_section} | 
| 228 | %\pagebreak | %\pagebreak | 
| 229 |  |  | 
| 230 |  |  | 
| 231 | %\part{Adjoint of the MIT GCM} | %\part{Adjoint of the MIT GCM} | 
| 232 |  |  | 
| 233 | % Section: Automatic Differentiation | % Section: Automatic Differentiation | 
| 234 | \input{part5/part5} | \input{s_autodiff/text/top_section} | 
| 235 | %\pagebreak | %\pagebreak | 
| 236 |  |  | 
| 237 |  |  | 
| 238 | %\part{Additional features} | %\part{Additional features} | 
| 239 |  |  | 
| 240 | % Section: Physical Packages | % Section: Physical Parameterization - Packages I | 
| 241 | \input{part6/part6} | \input{s_phys_pkgs/text/top_section} | 
| 242 | %\pagebreak | %\pagebreak | 
| 243 |  |  | 
| 244 | % Section: Pre-processing and Post-processing Tools | % Section: Diagnostics and I/O - Packages II, and Post-Processing Utilities | 
| 245 | \input{part7/part7} | \input{s_outp_pkgs/text/top_section} | 
| 246 | %\pagebreak | %\pagebreak | 
| 247 |  |  | 
| 248 | % Section: ECCO | % Section: Interface with ECCO | 
| 249 | \input{part8/part8} | \input{s_ecco/text/top_section} | 
| 250 | %\pagebreak | %\pagebreak | 
| 251 |  |  | 
| 252 | % Section: Model Uses | % Section: Under Development | 
| 253 |  | \input{s_under_dvlp/text/top_section} | 
| 254 |  |  | 
| 255 |  | % Section: Previous applications of MITgcm | 
| 256 | \input{model_uses} | \input{model_uses} | 
| 257 | %\pagebreak | %\pagebreak | 
| 258 |  |  |