| 1 | % $Header$ | % $Header$ | 
| 2 | % $Name$ | % $Name$ | 
| 3 |  |  | 
| 4 | \documentclass[12pt]{book} | \documentclass[10pt]{book} | 
| 5 |  |  | 
| 6 | %To help cross-reference | %To help cross-reference | 
| 7 | %\usepackage{showlabels} | %\usepackage{showlabels} | 
| 9 | %aja%\usepackage{amsfonts} | %aja%\usepackage{amsfonts} | 
| 10 | \usepackage{amsmath} | \usepackage{amsmath} | 
| 11 | \usepackage{html} | \usepackage{html} | 
| 12 |  | \usepackage{hthtml} | 
| 13 | \usepackage{graphicx} | \usepackage{graphicx} | 
| 14 |  | \usepackage{rotating} | 
| 15 |  |  | 
| 16 |  | % CNH playing around with page widths | 
| 17 |  | \usepackage{anysize} | 
| 18 |  |  | 
| 19 | %cnh%\usepackage{array} | %cnh%\usepackage{array} | 
| 20 | %cnh%\usepackage{multirow} | %cnh%\usepackage{multirow} | 
| 22 | %eh3  Commands to reference either files or symbols within the "HTML-ized" | %eh3  Commands to reference either files or symbols within the "HTML-ized" | 
| 23 | %eh3  ("vdb") code. | %eh3  ("vdb") code. | 
| 24 | %eh3 | %eh3 | 
| 25 | \newcommand{\filelink}[2]{ | %afe seems like these need to be long, sorry | 
| 26 | \htmladdnormallink{\em #1()}{../code_reference/vdb/byname/#2.html} | \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}} | 
| 27 | } | \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}} | 
| 28 | \newcommand{\varlink}[2]{ |  | 
| 29 | \htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html} | % afe  Commands to standardize typesetting | 
| 30 | } | \newcommand{\file}[1]{\texttt{#1}} | 
| 31 |  | \newcommand{\sectiontitle}[1]{\textsl{#1}} | 
| 32 |  | \newcommand{\code}[1]{\texttt{#1}} | 
| 33 |  |  | 
| 34 | %eh3 try out the epsfig package | %%  EH3 : try out the epsfig package | 
| 35 | \usepackage[dvips]{epsfig} | \usepackage[dvips]{epsfig} | 
| 36 | \def\scalefig#1{\epsfxsize #1\textwidth} | \def\scalefig#1{\epsfxsize #1\textwidth} | 
| 37 |  |  | 
| 38 |  | %EH3% ========================================================== | 
| 39 |  | %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   *** | 
| 40 |  | %EH3% | 
| 41 |  | %EH3%  Directions: To build the ``private'' or ``local-only'' | 
| 42 |  | %EH3%    version of this manual, then edit the following so | 
| 43 |  | %EH3%    they appear as: | 
| 44 |  | %EH3% | 
| 45 |  | %EH3%    % \includecomment{versionprivate} | 
| 46 |  | %EH3%    \excludecoment{versionprivate} | 
| 47 |  | %EH3% | 
| 48 |  | %EH3%    The default is to include everything which is: | 
| 49 |  | %EH3% | 
| 50 |  | %EH3%    \includecomment{versionprivate} | 
| 51 |  | %EH3%    % \excludecoment{versionprivate} | 
| 52 |  |  | 
| 53 |  | %\includecomment{versionprivate} | 
| 54 |  | \excludecomment{versionprivate} | 
| 55 |  |  | 
| 56 |  | %EH3% | 
| 57 |  | %EH3%    To use this comment, simply bracket any part of the | 
| 58 |  | %EH3%    manual with two lines that contain ONLY the following | 
| 59 |  | %EH3%    pair: | 
| 60 |  | %EH3% | 
| 61 |  | %EH3%      \begin{versionprivate} | 
| 62 |  | %EH3%      \end{versionprivate} | 
| 63 |  | %EH3% | 
| 64 |  | %EH3%    with NO additional comments or other commands on the | 
| 65 |  | %EH3%    lines containing the \begin{...}\end{...} statements. | 
| 66 |  | %EH3% | 
| 67 |  | %EH3%  ***   PRIVATE SECTIONS   ******   PRIVATE SECTIONS   *** | 
| 68 |  | %EH3% ========================================================== | 
| 69 |  |  | 
| 70 |  |  | 
| 71 | %ph%\usepackage{epsfig} | %ph%\usepackage{epsfig} | 
| 72 | %ph%\usepackage{psfrag} | %ph%\usepackage{psfrag} | 
| 94 | %aja%\gdef\harvardleft{[} | %aja%\gdef\harvardleft{[} | 
| 95 | %aja%\gdef\harvardright{]} | %aja%\gdef\harvardright{]} | 
| 96 | %aja%\bibpunct{[}{]}{,}{a}{}{,} | %aja%\bibpunct{[}{]}{,}{a}{}{,} | 
| 97 | \bibliographystyle{plain} | %\bibliographystyle{plain} | 
| 98 |  | %-jmc: try agu bib-style (give author names & year instead of just a number) | 
| 99 |  | \usepackage[square]{natbib} | 
| 100 |  | \bibliographystyle{agu} | 
| 101 |  |  | 
| 102 | % referencing | % referencing | 
| 103 | %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} | %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})} | 
| 120 | % This allows hyperlinks in PDF | % This allows hyperlinks in PDF | 
| 121 | % hyperref package and colors for hyperref package | % hyperref package and colors for hyperref package | 
| 122 | \usepackage{color} | \usepackage{color} | 
| 123 | \usepackage[dvips]{hyperref} | \usepackage{hyperref} | 
| 124 |  | %\usepackage[dvips] | 
| 125 | \definecolor{darkgreen}{rgb}{0,0.4,0} | \definecolor{darkgreen}{rgb}{0,0.4,0} | 
| 126 | \definecolor{darkblue}{rgb}{0,0,0.4} | \definecolor{darkblue}{rgb}{0,0,0.4} | 
| 127 | \definecolor{darkred}{rgb}{0.5,0,0} | \definecolor{darkred}{rgb}{0.5,0,0} | 
| 191 | \input{part6/part6} | \input{part6/part6} | 
| 192 | %\pagebreak | %\pagebreak | 
| 193 |  |  | 
| 194 | % Section: Diagnostics | % Section: Pre-processing and Post-processing Tools | 
| 195 | \input{part7/part7} | \input{part7/part7} | 
| 196 | %\pagebreak | %\pagebreak | 
| 197 |  |  | 
| 199 | \input{part8/part8} | \input{part8/part8} | 
| 200 | %\pagebreak | %\pagebreak | 
| 201 |  |  | 
| 202 |  | % Section: Model Uses | 
| 203 |  | \input{model_uses} | 
| 204 |  | %\pagebreak | 
| 205 |  |  | 
| 206 | % Section: References: | % Section: References: | 
| 207 | %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} | %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} | 
| 208 | \addcontentsline{toc}{chapter}{BIBLIOGRAPHY} | \addcontentsline{toc}{chapter}{BIBLIOGRAPHY} |