MITgcm/manual/manual.tex

% $Header: /u/u0/gcmpack/mitgcmdoc/manual.tex,v 1.8 2001/10/11 19:42:25 adcroft Exp $
% $Name:  $

\documentclass[12pt]{book}

%To help cross-reference
%\usepackage{showlabels}

%aja%\usepackage{amsfonts}
\usepackage{amsmath}
\usepackage{html}
\usepackage{graphics}

%cnh%\usepackage{array}
%cnh%\usepackage{multirow}

%ph%\usepackage{epsfig}
%ph%\usepackage{psfrag}
%ph%\usepackage{oldgerm}

% I commented the following because it introduced excessive white space
%aja%\usepackage{palatcm}              % better PDF 

% page headers and footers
%cnh%\usepackage{fancyhdr}
%\pagestyle{fancy}
%cnh%\fancyhead{}
%cnh%\fancyhead[LO]{\slshape \rightmark}
%cnh%\fancyhead[RE]{\slshape \leftmark}
%cnh%\fancyhead[RO,LE]{\thepage}
%cnh%\fancyfoot[CO,CE]{\today}
%cnh%\fancyfoot[RO,LE]{ }
%cnh%\renewcommand{\headrulewidth}{0.4pt}
%cnh%\renewcommand{\footrulewidth}{0.4pt}

% bibtex stuff
\newcommand{\BIBPATH}{.}
\usepackage{natbib}
\bibliographystyle{\BIBPATH/jmr_my}
\gdef\harvardleft{[}
\gdef\harvardright{]}
\bibpunct{[}{]}{,}{a}{}{,}

% referencing
%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
%ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
%ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
%ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
%ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
%ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}

% stuff for psfrag
%ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
%ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}

% This allows numbering of subsubsections
\setcounter{secnumdepth}{3}
% This changes the the chapter title
%\renewcommand{\chaptername}{Section}


\begin{document}

\bodytext{bgcolor="#FFFFFFFF"} 

\tableofcontents
\pagebreak

\part{MIT GCM basics}

% Section: Overview
\input{part1/part1}
%\pagebreak

% Section: Discretization and Algorithm
\input{part2/part2}
%\pagebreak

% Section: Getting started
\input{part3/part3}
%\pagebreak

% Section: Software Architecture
\input{part4/part4}
%\pagebreak


\part{Adjoint of the MIT GCM}

% Section: Automatic Differentiation
\input{part5/part5}
%\pagebreak


\part{Additional features}

% Section: Physical Packages
\input{part6/part6}
%\pagebreak

% Section: Diagnostics
\input{part7/part7}
%\pagebreak

% Section: ECCO Interface
\input{part8/part8}
%\pagebreak

% Section: References:
\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
\bibliography{\BIBPATH/manual_references}

\end{document}
1	cnh	1.9	% $Header: /u/u0/gcmpack/mitgcmdoc/manual.tex,v 1.8 2001/10/11 19:42:25 adcroft Exp $
2	adcroft	1.2	% $Name: $
3	adcroft	1.1
4			\documentclass[12pt]{book}
5
6	adcroft	1.8	%To help cross-reference
7			%\usepackage{showlabels}
8
9			%aja%\usepackage{amsfonts}
10	adcroft	1.1	\usepackage{amsmath}
11	cnh	1.7	\usepackage{html}
12	adcroft	1.8	\usepackage{graphics}
13
14			%cnh%\usepackage{array}
15			%cnh%\usepackage{multirow}
16
17			%ph%\usepackage{epsfig}
18			%ph%\usepackage{psfrag}
19			%ph%\usepackage{oldgerm}
20
21	adcroft	1.2	% I commented the following because it introduced excessive white space
22	adcroft	1.8	%aja%\usepackage{palatcm} % better PDF
23	adcroft	1.1
24			% page headers and footers
25	adcroft	1.8	%cnh%\usepackage{fancyhdr}
26	adcroft	1.2	%\pagestyle{fancy}
27	adcroft	1.8	%cnh%\fancyhead{}
28			%cnh%\fancyhead[LO]{\slshape \rightmark}
29			%cnh%\fancyhead[RE]{\slshape \leftmark}
30			%cnh%\fancyhead[RO,LE]{\thepage}
31			%cnh%\fancyfoot[CO,CE]{\today}
32			%cnh%\fancyfoot[RO,LE]{ }
33			%cnh%\renewcommand{\headrulewidth}{0.4pt}
34			%cnh%\renewcommand{\footrulewidth}{0.4pt}
35	adcroft	1.1
36	heimbach	1.5	% bibtex stuff
37			\newcommand{\BIBPATH}{.}
38			\usepackage{natbib}
39			\bibliographystyle{\BIBPATH/jmr_my}
40			\gdef\harvardleft{[}
41			\gdef\harvardright{]}
42			\bibpunct{[}{]}{,}{a}{}{,}
43
44	adcroft	1.1	% referencing
45	adcroft	1.8	%ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
46			%ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
47			%ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
48			%ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
49			%ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
50			%ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}
51	adcroft	1.1
52			% stuff for psfrag
53	adcroft	1.8	%ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
54			%ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
55	adcroft	1.1
56	adcroft	1.3	% This allows numbering of subsubsections
57			\setcounter{secnumdepth}{3}
58			% This changes the the chapter title
59			%\renewcommand{\chaptername}{Section}
60
61	adcroft	1.1
62			\begin{document}
63	cnh	1.9
64			\bodytext{bgcolor="#FFFFFFFF"}
65	adcroft	1.1
66			\tableofcontents
67			\pagebreak
68
69	cnh	1.7	\part{MIT GCM basics}
70	adcroft	1.3
71			% Section: Overview
72	adcroft	1.1	\input{part1/part1}
73	adcroft	1.8	%\pagebreak
74	adcroft	1.1
75	adcroft	1.3	% Section: Discretization and Algorithm
76	adcroft	1.1	\input{part2/part2}
77	adcroft	1.8	%\pagebreak
78	adcroft	1.1
79	adcroft	1.3	% Section: Getting started
80	adcroft	1.1	\input{part3/part3}
81	adcroft	1.8	%\pagebreak
82	adcroft	1.1
83	adcroft	1.3	% Section: Software Architecture
84	adcroft	1.1	\input{part4/part4}
85	adcroft	1.8	%\pagebreak
86	adcroft	1.1
87	adcroft	1.3
88			\part{Adjoint of the MIT GCM}
89
90			% Section: Automatic Differentiation
91	adcroft	1.1	\input{part5/part5}
92	adcroft	1.8	%\pagebreak
93	adcroft	1.1
94	adcroft	1.3
95			\part{Additional features}
96
97			% Section: Physical Packages
98	adcroft	1.1	\input{part6/part6}
99	adcroft	1.8	%\pagebreak
100	adcroft	1.1
101	adcroft	1.3	% Section: Diagnostics
102	adcroft	1.1	\input{part7/part7}
103	adcroft	1.8	%\pagebreak
104	adcroft	1.1
105	adcroft	1.3	% Section: ECCO Interface
106	adcroft	1.1	\input{part8/part8}
107	adcroft	1.8	%\pagebreak
108	adcroft	1.1
109	heimbach	1.5	% Section: References:
110	heimbach	1.6	\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
111			\addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
112	heimbach	1.5	\bibliography{\BIBPATH/manual_references}
113	heimbach	1.6
114	adcroft	1.1	\end{document}