1 |
cnh |
1.7 |
% $Header: /u/u0/gcmpack/mitgcmdoc/manual.tex,v 1.6 2001/10/05 22:22:20 heimbach Exp $ |
2 |
adcroft |
1.2 |
% $Name: $ |
3 |
adcroft |
1.1 |
|
4 |
|
|
\documentclass[12pt]{book} |
5 |
|
|
|
6 |
|
|
\usepackage{amsfonts} |
7 |
|
|
\usepackage{amsmath} |
8 |
cnh |
1.7 |
\usepackage{html} |
9 |
adcroft |
1.1 |
\usepackage{epsfig} |
10 |
|
|
\usepackage{graphics,subfigure} |
11 |
|
|
\usepackage{array} |
12 |
|
|
\usepackage{multirow} |
13 |
|
|
\usepackage{fancyhdr} |
14 |
|
|
\usepackage{psfrag} |
15 |
adcroft |
1.2 |
%\usepackage{oldgerm} |
16 |
|
|
% I commented the following because it introduced excessive white space |
17 |
|
|
%\usepackage{palatcm} % better PDF |
18 |
adcroft |
1.1 |
|
19 |
|
|
% page headers and footers |
20 |
adcroft |
1.2 |
%\pagestyle{fancy} |
21 |
adcroft |
1.1 |
\fancyhead{} |
22 |
|
|
\fancyhead[LO]{\slshape \rightmark} |
23 |
|
|
\fancyhead[RE]{\slshape \leftmark} |
24 |
|
|
\fancyhead[RO,LE]{\thepage} |
25 |
|
|
\fancyfoot[CO,CE]{\today} |
26 |
|
|
\fancyfoot[RO,LE]{ } |
27 |
|
|
\renewcommand{\headrulewidth}{0.4pt} |
28 |
|
|
\renewcommand{\footrulewidth}{0.4pt} |
29 |
|
|
|
30 |
heimbach |
1.5 |
% bibtex stuff |
31 |
|
|
\newcommand{\BIBPATH}{.} |
32 |
|
|
\usepackage{natbib} |
33 |
|
|
\bibliographystyle{\BIBPATH/jmr_my} |
34 |
|
|
\gdef\harvardleft{[} |
35 |
|
|
\gdef\harvardright{]} |
36 |
|
|
\bibpunct{[}{]}{,}{a}{}{,} |
37 |
|
|
|
38 |
adcroft |
1.1 |
% referencing |
39 |
|
|
\newcommand{\refequ}[1]{equation (\ref{equ:#1})} |
40 |
|
|
\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})} |
41 |
|
|
\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}} |
42 |
|
|
\newcommand{\reftabno}[1]{\ref{tab:#1}} |
43 |
|
|
\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}} |
44 |
|
|
\newcommand{\reffigno}[1]{\ref{fig:#1}} |
45 |
|
|
|
46 |
|
|
% stuff for psfrag |
47 |
|
|
\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}} |
48 |
|
|
\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}} |
49 |
|
|
|
50 |
adcroft |
1.3 |
% This allows numbering of subsubsections |
51 |
|
|
\setcounter{secnumdepth}{3} |
52 |
|
|
% This changes the the chapter title |
53 |
|
|
%\renewcommand{\chaptername}{Section} |
54 |
|
|
|
55 |
adcroft |
1.4 |
\usepackage{showlabels} |
56 |
adcroft |
1.1 |
|
57 |
|
|
|
58 |
|
|
\begin{document} |
59 |
|
|
|
60 |
|
|
\tableofcontents |
61 |
|
|
\pagebreak |
62 |
|
|
|
63 |
cnh |
1.7 |
\part{MIT GCM basics} |
64 |
adcroft |
1.3 |
|
65 |
|
|
% Section: Overview |
66 |
adcroft |
1.1 |
\input{part1/part1} |
67 |
|
|
\pagebreak |
68 |
|
|
|
69 |
adcroft |
1.3 |
% Section: Discretization and Algorithm |
70 |
adcroft |
1.1 |
\input{part2/part2} |
71 |
|
|
\pagebreak |
72 |
|
|
|
73 |
adcroft |
1.3 |
% Section: Getting started |
74 |
adcroft |
1.1 |
\input{part3/part3} |
75 |
|
|
\pagebreak |
76 |
|
|
|
77 |
adcroft |
1.3 |
% Section: Software Architecture |
78 |
adcroft |
1.1 |
\input{part4/part4} |
79 |
|
|
\pagebreak |
80 |
|
|
|
81 |
adcroft |
1.3 |
|
82 |
|
|
\part{Adjoint of the MIT GCM} |
83 |
|
|
|
84 |
|
|
% Section: Automatic Differentiation |
85 |
adcroft |
1.1 |
\input{part5/part5} |
86 |
|
|
\pagebreak |
87 |
|
|
|
88 |
adcroft |
1.3 |
|
89 |
|
|
\part{Additional features} |
90 |
|
|
|
91 |
|
|
% Section: Physical Packages |
92 |
adcroft |
1.1 |
\input{part6/part6} |
93 |
|
|
\pagebreak |
94 |
|
|
|
95 |
adcroft |
1.3 |
% Section: Diagnostics |
96 |
adcroft |
1.1 |
\input{part7/part7} |
97 |
|
|
\pagebreak |
98 |
|
|
|
99 |
adcroft |
1.3 |
% Section: ECCO Interface |
100 |
adcroft |
1.1 |
\input{part8/part8} |
101 |
heimbach |
1.6 |
\pagebreak |
102 |
adcroft |
1.1 |
|
103 |
heimbach |
1.5 |
% Section: References: |
104 |
heimbach |
1.6 |
\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY} |
105 |
|
|
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY} |
106 |
heimbach |
1.5 |
\bibliography{\BIBPATH/manual_references} |
107 |
heimbach |
1.6 |
|
108 |
adcroft |
1.1 |
\end{document} |