MITgcm/manual/manual.tex

% $Header: /u/gcmpack/mitgcmdoc/manual.tex,v 1.5 2001/10/04 19:30:23 heimbach Exp $
% $Name:  $

\documentclass[12pt]{book}

\usepackage{amsfonts}
\usepackage{amsmath}
\usepackage{/usr/local/pkg/latex2html/current/texinputs/html}
\usepackage{epsfig}
\usepackage{graphics,subfigure}
\usepackage{array}
\usepackage{multirow}
\usepackage{fancyhdr}
\usepackage{psfrag}
%\usepackage{oldgerm}
% I commented the following because it introduced excessive white space
%\usepackage{palatcm}              % better PDF 

% page headers and footers
%\pagestyle{fancy}
\fancyhead{}
\fancyhead[LO]{\slshape \rightmark}
\fancyhead[RE]{\slshape \leftmark}
\fancyhead[RO,LE]{\thepage}
\fancyfoot[CO,CE]{\today}
\fancyfoot[RO,LE]{ }
\renewcommand{\headrulewidth}{0.4pt}
\renewcommand{\footrulewidth}{0.4pt}

% bibtex stuff
\newcommand{\BIBPATH}{.}
\usepackage{natbib}
\bibliographystyle{\BIBPATH/jmr_my}
\gdef\harvardleft{[}
\gdef\harvardright{]}
\bibpunct{[}{]}{,}{a}{}{,}

% referencing
\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
\newcommand{\reftabno}[1]{\ref{tab:#1}}
\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
\newcommand{\reffigno}[1]{\ref{fig:#1}}

% stuff for psfrag
\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}

% This allows numbering of subsubsections
\setcounter{secnumdepth}{3}
% This changes the the chapter title
%\renewcommand{\chaptername}{Section}

\usepackage{showlabels}


\begin{document}

\tableofcontents
\pagebreak

\part{The MIT GCM basics}

% Section: Overview
\input{part1/part1}
\pagebreak

% Section: Discretization and Algorithm
\input{part2/part2}
\pagebreak

% Section: Getting started
\input{part3/part3}
\pagebreak

% Section: Software Architecture
\input{part4/part4}
\pagebreak


\part{Adjoint of the MIT GCM}

% Section: Automatic Differentiation
\input{part5/part5}
\pagebreak


\part{Additional features}

% Section: Physical Packages
\input{part6/part6}
\pagebreak

% Section: Diagnostics
\input{part7/part7}
\pagebreak

% Section: ECCO Interface
\input{part8/part8}
\pagebreak

% Section: References:
\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
\addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
\bibliography{\BIBPATH/manual_references}

\end{document}
1	heimbach	1.6	% $Header: /u/gcmpack/mitgcmdoc/manual.tex,v 1.5 2001/10/04 19:30:23 heimbach Exp $
2	adcroft	1.2	% $Name: $
3	adcroft	1.1
4			\documentclass[12pt]{book}
5
6			\usepackage{amsfonts}
7			\usepackage{amsmath}
8	heimbach	1.5	\usepackage{/usr/local/pkg/latex2html/current/texinputs/html}
9	adcroft	1.1	\usepackage{epsfig}
10			\usepackage{graphics,subfigure}
11			\usepackage{array}
12			\usepackage{multirow}
13			\usepackage{fancyhdr}
14			\usepackage{psfrag}
15	adcroft	1.2	%\usepackage{oldgerm}
16			% I commented the following because it introduced excessive white space
17			%\usepackage{palatcm} % better PDF
18	adcroft	1.1
19			% page headers and footers
20	adcroft	1.2	%\pagestyle{fancy}
21	adcroft	1.1	\fancyhead{}
22			\fancyhead[LO]{\slshape \rightmark}
23			\fancyhead[RE]{\slshape \leftmark}
24			\fancyhead[RO,LE]{\thepage}
25			\fancyfoot[CO,CE]{\today}
26			\fancyfoot[RO,LE]{ }
27			\renewcommand{\headrulewidth}{0.4pt}
28			\renewcommand{\footrulewidth}{0.4pt}
29
30	heimbach	1.5	% bibtex stuff
31			\newcommand{\BIBPATH}{.}
32			\usepackage{natbib}
33			\bibliographystyle{\BIBPATH/jmr_my}
34			\gdef\harvardleft{[}
35			\gdef\harvardright{]}
36			\bibpunct{[}{]}{,}{a}{}{,}
37
38	adcroft	1.1	% referencing
39			\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
40			\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
41			\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
42			\newcommand{\reftabno}[1]{\ref{tab:#1}}
43			\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
44			\newcommand{\reffigno}[1]{\ref{fig:#1}}
45
46			% stuff for psfrag
47			\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
48			\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
49
50	adcroft	1.3	% This allows numbering of subsubsections
51			\setcounter{secnumdepth}{3}
52			% This changes the the chapter title
53			%\renewcommand{\chaptername}{Section}
54
55	adcroft	1.4	\usepackage{showlabels}
56	adcroft	1.1
57
58			\begin{document}
59
60			\tableofcontents
61			\pagebreak
62
63	adcroft	1.3	\part{The MIT GCM basics}
64
65			% Section: Overview
66	adcroft	1.1	\input{part1/part1}
67			\pagebreak
68
69	adcroft	1.3	% Section: Discretization and Algorithm
70	adcroft	1.1	\input{part2/part2}
71			\pagebreak
72
73	adcroft	1.3	% Section: Getting started
74	adcroft	1.1	\input{part3/part3}
75			\pagebreak
76
77	adcroft	1.3	% Section: Software Architecture
78	adcroft	1.1	\input{part4/part4}
79			\pagebreak
80
81	adcroft	1.3
82			\part{Adjoint of the MIT GCM}
83
84			% Section: Automatic Differentiation
85	adcroft	1.1	\input{part5/part5}
86			\pagebreak
87
88	adcroft	1.3
89			\part{Additional features}
90
91			% Section: Physical Packages
92	adcroft	1.1	\input{part6/part6}
93			\pagebreak
94
95	adcroft	1.3	% Section: Diagnostics
96	adcroft	1.1	\input{part7/part7}
97			\pagebreak
98
99	adcroft	1.3	% Section: ECCO Interface
100	adcroft	1.1	\input{part8/part8}
101	heimbach	1.6	\pagebreak
102	adcroft	1.1
103	heimbach	1.5	% Section: References:
104	heimbach	1.6	\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
105			\addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
106	heimbach	1.5	\bibliography{\BIBPATH/manual_references}
107	heimbach	1.6
108	adcroft	1.1	\end{document}