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Revision 1.26 - (hide annotations) (download) (as text)
Sun Oct 17 18:25:18 2004 UTC (14 years, 11 months ago) by edhill
Branch: MAIN
Changes since 1.25: +2 -2 lines
File MIME type: application/x-tex
 o shrink to \documentclass[10pt]{book} from [12pt]

1 edhill 1.26 % $Header: /u/gcmpack/manual/manual.tex,v 1.25 2004/03/31 19:44:10 edhill Exp $
2 adcroft 1.2 % $Name: $
3 adcroft 1.1
4 edhill 1.26 \documentclass[10pt]{book}
5 adcroft 1.1
6 adcroft 1.8 %To help cross-reference
7     %\usepackage{showlabels}
8    
9     %aja%\usepackage{amsfonts}
10 adcroft 1.1 \usepackage{amsmath}
11 cnh 1.7 \usepackage{html}
12 cnh 1.19 \usepackage{hthtml}
13 adcroft 1.10 \usepackage{graphicx}
14 adcroft 1.8
15     %cnh%\usepackage{array}
16     %cnh%\usepackage{multirow}
17 cnh 1.12
18 edhill 1.16 %eh3 Commands to reference either files or symbols within the "HTML-ized"
19     %eh3 ("vdb") code.
20     %eh3
21 afe 1.23 %afe seems like these need to be long, sorry
22     \newcommand{\varlink}[2]{\htmladdnormallink{\tt #1}{../code_reference/vdb/byname/#2.html}}
23     \newcommand{\filelink}[2]{\htmladdnormallink{\bf \tt #1}{../code_reference/vdb/byname/#2.html}}
24 afe 1.22
25     % afe Commands to standardize typesetting
26 afe 1.23 \newcommand{\file}[1]{\texttt{#1}}
27     \newcommand{\sectiontitle}[1]{\textsl{#1}}
28     \newcommand{\code}[1]{\texttt{#1}}
29 afe 1.22
30 edhill 1.25 %% EH3 : try out the epsfig package
31 edhill 1.18 \usepackage[dvips]{epsfig}
32     \def\scalefig#1{\epsfxsize #1\textwidth}
33 edhill 1.25
34     %EH3% ==========================================================
35     %EH3% *** PRIVATE SECTIONS ****** PRIVATE SECTIONS ***
36     %EH3%
37     %EH3% Directions: To build the ``private'' or ``local-only''
38     %EH3% version of this manual, then edit the following so
39     %EH3% they appear as:
40     %EH3%
41     %EH3% % \includecomment{versionprivate}
42     %EH3% \excludecoment{versionprivate}
43     %EH3%
44     %EH3% The default is to include everything which is:
45     %EH3%
46     %EH3% \includecomment{versionprivate}
47     %EH3% % \excludecoment{versionprivate}
48    
49     %\includecomment{versionprivate}
50     \excludecomment{versionprivate}
51    
52     %EH3%
53     %EH3% To use this comment, simply bracket any part of the
54     %EH3% manual with two lines that contain ONLY the following
55     %EH3% pair:
56     %EH3%
57     %EH3% \begin{versionprivate}
58     %EH3% \end{versionprivate}
59     %EH3%
60     %EH3% with NO additional comments or other commands on the
61     %EH3% lines containing the \begin{...}\end{...} statements.
62     %EH3%
63     %EH3% *** PRIVATE SECTIONS ****** PRIVATE SECTIONS ***
64     %EH3% ==========================================================
65 cnh 1.12
66 adcroft 1.8
67     %ph%\usepackage{epsfig}
68     %ph%\usepackage{psfrag}
69     %ph%\usepackage{oldgerm}
70    
71 adcroft 1.2 % I commented the following because it introduced excessive white space
72 adcroft 1.8 %aja%\usepackage{palatcm} % better PDF
73 adcroft 1.1
74     % page headers and footers
75 adcroft 1.8 %cnh%\usepackage{fancyhdr}
76 adcroft 1.2 %\pagestyle{fancy}
77 adcroft 1.8 %cnh%\fancyhead{}
78     %cnh%\fancyhead[LO]{\slshape \rightmark}
79     %cnh%\fancyhead[RE]{\slshape \leftmark}
80     %cnh%\fancyhead[RO,LE]{\thepage}
81     %cnh%\fancyfoot[CO,CE]{\today}
82     %cnh%\fancyfoot[RO,LE]{ }
83     %cnh%\renewcommand{\headrulewidth}{0.4pt}
84     %cnh%\renewcommand{\footrulewidth}{0.4pt}
85 adcroft 1.1
86 heimbach 1.5 % bibtex stuff
87 adcroft 1.10 %aja%\newcommand{\BIBPATH}{.}
88     %aja%\usepackage{natbib}
89     %aja%\bibliographystyle{\BIBPATH/jmr_my}
90     %aja%\gdef\harvardleft{[}
91     %aja%\gdef\harvardright{]}
92     %aja%\bibpunct{[}{]}{,}{a}{}{,}
93     \bibliographystyle{plain}
94 heimbach 1.5
95 adcroft 1.1 % referencing
96 adcroft 1.8 %ph%\newcommand{\refequ}[1]{equation (\ref{equ:#1})}
97     %ph%\newcommand{\refequbig}[1]{Equation (\ref{equ:#1})}
98     %ph%\newcommand{\reftab}[1]{Tab.~\ref{tab:#1}}
99     %ph%\newcommand{\reftabno}[1]{\ref{tab:#1}}
100     %ph%\newcommand{\reffig}[1]{Fig.~\ref{fig:#1}}
101     %ph%\newcommand{\reffigno}[1]{\ref{fig:#1}}
102 adcroft 1.1
103     % stuff for psfrag
104 adcroft 1.8 %ph%\newcommand{\textinfigure}[1]{{\footnotesize\textbf{\textsf{#1}}}}
105     %ph%\newcommand{\mathinfigure}[1]{\small\ensuremath{{#1}}}
106 adcroft 1.1
107 adcroft 1.3 % This allows numbering of subsubsections
108     \setcounter{secnumdepth}{3}
109     % This changes the the chapter title
110     %\renewcommand{\chaptername}{Section}
111    
112 adcroft 1.11
113     % This allows hyperlinks in PDF
114     % hyperref package and colors for hyperref package
115     \usepackage{color}
116     \usepackage[dvips]{hyperref}
117     \definecolor{darkgreen}{rgb}{0,0.4,0}
118     \definecolor{darkblue}{rgb}{0,0,0.4}
119     \definecolor{darkred}{rgb}{0.5,0,0}
120     \hypersetup{breaklinks=true,
121     colorlinks=true,
122     linkcolor=darkgreen,
123     citecolor=darkblue,
124     pagecolor=darkred,
125     pdftitle={MITgcm Release 1 Documentation},
126 edhill 1.15 pdfauthor={MITgcm-support@mitgcm.org},
127 adcroft 1.11 pdfkeywords={oceanography, ocean model, general circulation model,
128     non-hydrostatic, finite volume, inverse methods, adjoint method}
129     }
130 molod 1.17
131     % Some definitions (AMM)
132     \def\p#1{{\partial \over {\partial #1}}}
133     \def\pp#1#2{{\partial #1 \over {\partial #2}}}
134     \def\dd#1#2{{d #1 \over {d #2}}}
135     \def\bq{\begin{equation}}
136     \def\bqa{\begin{eqnarray}}
137     \def\eq{\end{equation}}
138     \def\eqa{\end{eqnarray}}
139    
140     \def\h{ {1\over2} }
141     \def\txt{\mbox{$2^\circ$ x $2.5^\circ \,$}}
142     \def\fxf{\mbox{$4^\circ$ x $5^\circ \,$}}
143    
144     \def\blankpage{ \vspace*{\fill} \vspace{5in} \vfill \newpage}
145    
146 adcroft 1.1
147     \begin{document}
148 cnh 1.9
149     \bodytext{bgcolor="#FFFFFFFF"}
150 adcroft 1.1
151     \tableofcontents
152 adcroft 1.10 %\pagebreak
153 adcroft 1.1
154 adcroft 1.10 %\part{MIT GCM basics}
155 adcroft 1.3
156     % Section: Overview
157 adcroft 1.1 \input{part1/part1}
158 adcroft 1.8 %\pagebreak
159 adcroft 1.1
160 adcroft 1.3 % Section: Discretization and Algorithm
161 adcroft 1.1 \input{part2/part2}
162 adcroft 1.8 %\pagebreak
163 adcroft 1.1
164 adcroft 1.3 % Section: Getting started
165 adcroft 1.1 \input{part3/part3}
166 adcroft 1.8 %\pagebreak
167 adcroft 1.1
168 adcroft 1.3 % Section: Software Architecture
169 adcroft 1.1 \input{part4/part4}
170 adcroft 1.8 %\pagebreak
171 adcroft 1.1
172 adcroft 1.3
173 adcroft 1.10 %\part{Adjoint of the MIT GCM}
174 adcroft 1.3
175     % Section: Automatic Differentiation
176 adcroft 1.1 \input{part5/part5}
177 adcroft 1.8 %\pagebreak
178 adcroft 1.1
179 adcroft 1.3
180 adcroft 1.10 %\part{Additional features}
181 adcroft 1.3
182     % Section: Physical Packages
183 adcroft 1.1 \input{part6/part6}
184 adcroft 1.8 %\pagebreak
185 adcroft 1.1
186 adcroft 1.3 % Section: Diagnostics
187 adcroft 1.1 \input{part7/part7}
188 adcroft 1.14 %\pagebreak
189    
190     % Section: ECCO
191     \input{part8/part8}
192 edhill 1.24 %\pagebreak
193    
194     % Section: Model Uses
195     \input{model_uses}
196 adcroft 1.8 %\pagebreak
197 adcroft 1.1
198 heimbach 1.5 % Section: References:
199 adcroft 1.10 %\markboth{BIBLIOGRAPHY}{BIBLIOGRAPHY}
200 heimbach 1.6 \addcontentsline{toc}{chapter}{BIBLIOGRAPHY}
201 adcroft 1.10 %aja%\bibliography{\BIBPATH/manual_references}
202     \bibliography{manual_references}
203 heimbach 1.6
204 adcroft 1.1 \end{document}

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